Experiment set3IT014 for Cupriavidus basilensis FW507-4G11

Compare to:

Glycine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -6.9 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS13910 -6.5 -6.3 glutamate racemase compare
RR42_RS16265 -6.2 -4.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS15750 -6.2 -7.4 hypothetical protein compare
RR42_RS30655 -6.1 -5.9 LysR family transcriptional regulator compare
RR42_RS01255 -6.1 -9.2 lauroyl acyltransferase compare
RR42_RS19005 -6.0 -5.8 3-dehydroquinate synthase compare
RR42_RS14390 -5.9 -4.1 3-isopropylmalate dehydratase compare
RR42_RS16250 -5.9 -5.7 sulfate adenylyltransferase compare
RR42_RS05860 -5.9 -5.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS06485 -5.8 -5.6 chorismate synthase compare
RR42_RS14400 -5.5 -3.8 isopropylmalate isomerase compare
RR42_RS33255 -5.5 -3.4 protein-tyrosine phosphatase compare
RR42_RS15745 -5.4 -9.8 group1 glycosyl transferase compare
RR42_RS18840 -5.4 -3.7 2-alkenal reductase compare
RR42_RS17865 -5.2 -6.2 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS15455 -5.2 -7.1 membrane protein compare
RR42_RS00830 -5.1 -4.9 cell division protein FtsN compare
RR42_RS18970 -5.0 -16.8 toluene ABC transporter ATP-binding protein compare
RR42_RS35875 -5.0 -8.9 UDP-galactose-4-epimerase compare
RR42_RS33215 -5.0 -13.2 transferase compare
RR42_RS14365 -4.9 -3.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS33240 -4.9 -15.4 GDP-L-fucose synthase compare
RR42_RS01680 -4.9 -10.9 cytochrome C550 compare
RR42_RS21220 -4.9 -3.3 iron transporter FeoB compare
RR42_RS33260 -4.8 -8.0 multidrug MFS transporter compare
RR42_RS15720 -4.8 -9.1 hypothetical protein compare
RR42_RS07555 -4.7 -3.2 potassium transporter Kup compare
RR42_RS04475 -4.7 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS14320 -4.6 -6.3 O-succinylhomoserine sulfhydrylase compare
RR42_RS16270 -4.6 -9.6 sulfite reductase compare
RR42_RS33210 -4.5 -8.1 teichoic acid biosynthesis protein compare
RR42_RS15735 -4.4 -13.9 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS16255 -4.4 -7.0 sulfate adenylyltransferase compare
RR42_RS18945 -4.2 -7.6 toluene tolerance protein compare
RR42_RS15770 -4.2 -7.4 hypothetical protein compare
RR42_RS02705 -4.2 -3.1 Holliday junction DNA helicase RuvA compare
RR42_RS18965 -4.2 -12.0 ABC transporter permease compare
RR42_RS15740 -4.2 -2.4 hypothetical protein compare
RR42_RS16245 -4.1 -6.3 uroporphyrin-III methyltransferase compare
RR42_RS13015 -4.1 -6.6 fatty acid hydroxylase compare
RR42_RS18960 -4.1 -12.2 ABC transporter substrate-binding protein compare
RR42_RS33250 -4.1 -7.9 tyrosine protein kinase compare
RR42_RS18990 -4.0 -18.7 glutamate synthase compare
RR42_RS01160 -4.0 -8.5 homoserine O-acetyltransferase compare
RR42_RS16280 -4.0 -6.8 transcriptional regulator compare
RR42_RS16275 -4.0 -5.4 membrane protein compare
RR42_RS30660 -4.0 -9.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS14385 -3.9 -6.2 3-isopropylmalate dehydrogenase compare
RR42_RS18295 -3.9 -10.4 anthranilate synthase component I compare
RR42_RS15775 -3.8 -6.3 N-acetylneuraminate synthase compare
RR42_RS33235 -3.8 -8.6 GDP-mannose 4,6-dehydratase compare
RR42_RS18300 -3.8 -4.6 anthranilate synthase subunit II compare
RR42_RS33245 -3.7 -8.8 mannose-1-phosphate guanyltransferase compare
RR42_RS12545 -3.7 -9.6 aminotransferase compare
RR42_RS01845 -3.6 -2.2 glycerol-3-phosphate dehydrogenase compare
RR42_RS02500 -3.6 -3.3 TetR family transcriptional regulator compare
RR42_RS12980 -3.6 -7.6 chemotaxis protein CheY compare
RR42_RS15640 -3.5 -2.1 hypothetical protein compare
RR42_RS26935 -3.4 -6.1 farnesyl-diphosphate farnesyltransferase compare
RR42_RS15470 -3.3 -2.8 biopolymer transporter ExbD compare
RR42_RS01780 -3.3 -10.2 glutathione synthetase compare
RR42_RS33355 -3.3 -5.4 membrane protein compare
RR42_RS04765 -3.3 -3.2 3-oxoacyl-ACP reductase compare
RR42_RS01290 -3.3 -8.2 thiamine biosynthesis protein ThiC compare
RR42_RS25930 -3.2 -7.9 glycine dehydrogenase (deaminating) (EC 1.4.1.10) (from data) conserved
RR42_RS15475 -3.2 -7.6 protein tolQ compare
RR42_RS15890 -3.2 -7.1 heme biosynthesis protein HemY compare
RR42_RS19010 -3.2 -7.4 shikimate kinase compare
RR42_RS18985 -3.1 -6.6 glutamate synthase compare
RR42_RS14360 -3.1 -1.6 tryptophan synthase subunit alpha compare
RR42_RS04535 -3.1 -6.1 cysteine synthase compare
RR42_RS21000 -3.0 -3.4 glycosyl transferase compare
RR42_RS15785 -3.0 -10.1 glycosyl transferase family 28 compare
RR42_RS15090 -3.0 -7.0 DNA helicase compare
RR42_RS14480 -3.0 -3.5 hypothetical protein compare
RR42_RS04320 -2.9 -5.1 cell division protein FtsK compare
RR42_RS18855 -2.9 -4.8 preprotein translocase compare
RR42_RS12040 -2.9 -13.2 MFS transporter compare
RR42_RS12615 -2.9 -3.7 LexA family transcriptional regulator compare
RR42_RS04700 -2.8 -1.6 ribonuclease G compare
RR42_RS14065 -2.8 -8.6 serine peptidase conserved
RR42_RS24605 -2.7 -7.2 TetR family transcriptional regulator compare
RR42_RS01795 -2.7 -11.7 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS33205 -2.7 -9.4 UDP-glucose 6-dehydrogenase compare
RR42_RS00940 -2.6 -8.6 biotin synthase compare
RR42_RS04460 -2.6 -4.8 chorismate mutase compare
RR42_RS15460 -2.5 -5.9 translocation protein TolB compare
RR42_RS07595 -2.5 -10.3 hypothetical protein conserved
RR42_RS17645 -2.5 -5.6 shikimate dehydrogenase compare
RR42_RS12015 -2.5 -2.7 dihydrolipoamide acyltransferase compare
RR42_RS16240 -2.5 -1.3 cobalamin biosynthesis protein CbiX compare
RR42_RS01385 -2.4 -2.1 5,10-methylenetetrahydrofolate reductase compare
RR42_RS15465 -2.3 -2.6 TonB-dependent receptor compare
RR42_RS15810 -2.3 -2.5 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS15895 -2.3 -7.8 uroporphyrinogen III methyltransferase compare
RR42_RS01260 -2.3 -7.8 lauroyl acyltransferase compare
RR42_RS15790 -2.3 -8.7 aminotransferase class III compare
RR42_RS16260 -2.3 -1.3 phosphoadenosine phosphosulfate reductase compare
RR42_RS00115 -2.3 -2.5 hypothetical protein compare
RR42_RS13040 -2.1 -4.6 iron transporter compare
RR42_RS11790 -2.1 -9.1 phosphoenolpyruvate synthase compare
RR42_RS00420 -2.1 -3.7 hypothetical protein compare
RR42_RS15730 -2.1 -8.4 sugar transferase compare
RR42_RS03170 -2.1 -2.8 hypothetical protein compare
RR42_RS02810 -2.1 -2.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS13025 -2.1 -3.3 hypothetical protein compare
RR42_RS17620 -2.1 -3.1 phosphatidylglycerophosphatase compare
RR42_RS17105 -2.0 -10.4 Clp protease ClpX compare
RR42_RS13905 -2.0 -2.8 fumarate hydratase compare
RR42_RS20305 -2.0 -8.7 metal ABC transporter ATPase compare
RR42_RS01775 -2.0 -4.3 glutamate--cysteine ligase compare
RR42_RS20205 -2.0 -3.0 chromosome partitioning protein compare
RR42_RS01830 -2.0 -5.8 sulfurtransferase compare
RR42_RS33575 -2.0 -3.1 hypothetical protein compare
RR42_RS00725 -1.9 -3.4 hypothetical protein compare
RR42_RS22590 -1.9 -1.6 organic hydroperoxide resistance protein compare
RR42_RS12985 -1.9 -4.9 histidine kinase compare
RR42_RS18925 -1.9 -6.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
RR42_RS15825 -1.9 -9.1 capsular biosynthesis protein compare
RR42_RS17355 -1.8 -1.5 hypothetical protein compare
RR42_RS07605 -1.8 -7.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS21040 -1.8 -1.3 hypothetical protein compare
RR42_RS02765 -1.8 -11.3 aminoglycoside phosphotransferase compare
RR42_RS12550 -1.8 -3.2 hypothetical protein compare
RR42_RS17050 -1.7 -5.5 phosphoribosylglycinamide formyltransferase compare
RR42_RS03080 -1.7 -3.6 recombinase RecA compare
RR42_RS11795 -1.7 -3.7 PEP synthetase regulatory protein compare
RR42_RS19065 -1.7 -8.5 transcriptional regulator compare
RR42_RS11885 -1.7 -8.6 (protein-PII) uridylyltransferase compare
RR42_RS02150 -1.7 -2.5 membrane protein compare
RR42_RS06325 -1.7 -2.4 serine O-acetyltransferase compare
RR42_RS18000 -1.7 -8.9 cell division protein ZapD compare
RR42_RS11180 -1.6 -2.4 peptidylprolyl isomerase compare
RR42_RS06095 -1.6 -5.1 hypothetical protein compare
RR42_RS26900 -1.6 -2.4 enoyl-CoA hydratase compare
RR42_RS07565 -1.6 -7.2 transcription accessory protein compare
RR42_RS06020 -1.6 -1.1 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS12050 -1.6 -5.6 DNA polymerase compare
RR42_RS04895 -1.6 -9.1 serine/threonine protein phosphatase compare
RR42_RS02085 -1.5 -5.2 RNA polymerase subunit sigma-54 compare
RR42_RS19085 -1.5 -1.4 cytochrome C biogenesis protein ResB compare
RR42_RS25785 -1.5 -3.5 TetR family transcriptional regulator compare
RR42_RS18850 -1.5 -2.0 preprotein translocase subunit TatC compare
RR42_RS14080 -1.5 -5.5 RNA polymerase sigma factor RpoE compare
RR42_RS21095 -1.5 -3.9 GntR family transcriptional regulator compare
RR42_RS22275 -1.5 -2.8 hypothetical protein compare
RR42_RS15800 -1.5 -2.8 aldo/keto reductase compare
RR42_RS07365 -1.5 -2.8 pyruvate dehydrogenase compare
RR42_RS18310 -1.5 -1.3 indole-3-glycerol-phosphate synthase compare
RR42_RS06635 -1.5 -3.7 MerR family transcriptional regulator compare
RR42_RS15710 -1.5 -4.6 LPS biosynthesis protein compare
RR42_RS31205 -1.5 -2.9 phospho-N-acetylmuramoyl-pentapeptide transferase compare
RR42_RS10310 -1.4 -2.3 NADPH:quinone reductase compare
RR42_RS17060 -1.4 -10.3 histidine kinase compare
RR42_RS02750 -1.4 -5.9 mannose-1-phosphate guanylyltransferase compare
RR42_RS30185 -1.4 -5.2 TetR family transcriptional regulator compare
RR42_RS05990 -1.4 -6.3 aromatic amino acid aminotransferase compare
RR42_RS32245 -1.4 -8.8 RND transporter compare
RR42_RS06630 -1.4 -2.2 integration host factor subunit alpha compare
RR42_RS07940 -1.3 -2.9 ABC transporter permease compare
RR42_RS17595 -1.3 -2.6 hypothetical protein compare
RR42_RS32585 -1.3 -1.8 cytochrome C oxidase compare
RR42_RS20535 -1.3 -4.9 3-phosphoglycerate dehydrogenase compare
RR42_RS03035 -1.3 -1.4 membrane protein compare
RR42_RS08365 -1.3 -5.1 hypothetical protein compare
RR42_RS17390 -1.3 -5.4 ATP-dependent DNA helicase RecG compare
RR42_RS32235 -1.3 -5.4 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS09630 -1.3 -2.6 hypothetical protein compare
RR42_RS27095 -1.3 -2.4 hypothetical protein compare
RR42_RS15795 -1.3 -2.7 spore coat protein compare
RR42_RS11655 -1.3 -1.6 heat-shock protein Hsp20 compare
RR42_RS32590 -1.3 -1.7 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS32495 -1.3 -2.3 shikimate kinase compare
RR42_RS02045 -1.3 -7.9 GTPase compare
RR42_RS04470 -1.2 -2.8 prephenate dehydrogenase compare
RR42_RS34650 -1.2 -5.3 LacI family transcriptional regulator compare
RR42_RS14965 -1.2 -2.2 hypothetical protein compare
RR42_RS17720 -1.2 -2.0 sugar kinase compare
RR42_RS13935 -1.2 -1.9 hemin transporter compare
RR42_RS01185 -1.2 -6.9 muropeptide transporter compare
RR42_RS15415 -1.2 -3.0 membrane protein compare
RR42_RS28615 -1.2 -3.5 ABC transporter substrate-binding protein compare
RR42_RS19490 -1.2 -2.5 general secretion pathway protein GspI compare
RR42_RS05955 -1.2 -1.0 hypothetical protein compare
RR42_RS16965 -1.2 -3.9 ABC transporter compare
RR42_RS11770 -1.2 -1.5 cyclase compare
RR42_RS13020 -1.2 -2.0 peptidase A8 compare
RR42_RS08030 -1.1 -2.2 hypothetical protein compare
RR42_RS02475 -1.1 -3.8 endonuclease compare
RR42_RS13620 -1.1 -1.2 ferredoxin compare
RR42_RS09180 -1.1 -1.1 Rrf2 family transcriptional regulator compare
RR42_RS24930 -1.1 -1.0 AraC family transcriptional regulator compare
RR42_RS32600 -1.1 -2.5 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS15705 -1.1 -4.0 glycosyl transferase family 1 compare
RR42_RS18825 -1.1 -3.2 ubiquinol-cytochrome C reductase compare
RR42_RS00925 -1.1 -4.8 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS01380 -1.1 -1.2 membrane protein compare
RR42_RS17555 -1.1 -1.3 hypothetical protein compare
RR42_RS33360 -1.1 -4.3 membrane protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Glycine in Cupriavidus basilensis FW507-4G11

For nitrogen source Glycine across organisms