Experiment set3IT014 for Cupriavidus basilensis FW507-4G11

Compare to:

Glycine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS29610 +1.9 3.4 cytochrome C2 compare
RR42_RS00600 +1.9 0.9 DeoR family transcriptional regulator compare
RR42_RS08210 +1.4 1.7 hypothetical protein compare
RR42_RS29280 +1.2 1.7 hypothetical protein compare
RR42_RS31330 +1.2 1.5 LysR family transcriptional regulator compare
RR42_RS17805 +1.1 1.6 hypothetical protein compare
RR42_RS15525 +1.1 1.3 hypothetical protein compare
RR42_RS10920 +1.1 2.3 hypothetical protein compare
RR42_RS30410 +1.1 2.4 hypothetical protein compare
RR42_RS04770 +1.1 1.9 methylglyoxal synthase compare
RR42_RS27290 +1.0 2.0 hypothetical protein compare
RR42_RS26455 +1.0 1.3 amino acid ABC transporter ATP-binding protein compare
RR42_RS08320 +1.0 1.3 hypothetical protein compare
RR42_RS18425 +1.0 1.0 hypothetical protein compare
RR42_RS35250 +1.0 2.2 alpha/beta hydrolase compare
RR42_RS00345 +1.0 2.0 LysR family transcriptional regulator compare
RR42_RS19895 +1.0 1.8 elongation factor GreAB compare
RR42_RS22295 +1.0 1.5 methionine sulfoxide reductase B compare
RR42_RS14520 +0.9 1.5 mobilization protein compare
RR42_RS32960 +0.9 2.3 2-dehydropantoate 2-reductase compare
RR42_RS18730 +0.9 1.7 hypothetical protein compare
RR42_RS21455 +0.9 1.9 transposase compare
RR42_RS08945 +0.9 1.2 hypothetical protein compare
RR42_RS13865 +0.9 1.4 hypothetical protein compare
RR42_RS26265 +0.9 1.4 hypothetical protein compare
RR42_RS13130 +0.9 2.2 membrane protein compare
RR42_RS35240 +0.9 2.5 acyl-CoA dehydrogenase compare
RR42_RS07115 +0.9 1.1 hypothetical protein compare
RR42_RS28400 +0.9 1.5 CoA-transferase compare
RR42_RS32870 +0.8 2.2 stress responsive protein compare
RR42_RS26740 +0.8 1.6 protein serine/threonine phosphatase compare
RR42_RS12240 +0.8 1.6 hypothetical protein compare
RR42_RS21075 +0.8 1.0 phosphoribosyltransferase compare
RR42_RS22030 +0.8 2.2 hypothetical protein compare
RR42_RS25455 +0.8 1.3 acetyl-CoA acetyltransferase compare
RR42_RS19685 +0.8 1.3 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS21450 +0.8 1.5 hypothetical protein compare
RR42_RS13565 +0.8 7.1 lytic transglycosylase compare
RR42_RS02310 +0.8 2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS28425 +0.8 2.5 3-hydroxybutyryl-CoA dehydratase compare
RR42_RS04420 +0.8 3.2 required for efflux of an amino acid polymer (from data) compare
RR42_RS27500 +0.8 1.8 hypothetical protein compare
RR42_RS37055 +0.8 1.6 hypothetical protein compare
RR42_RS03910 +0.8 1.5 (2Fe-2S)-binding protein compare
RR42_RS10515 +0.8 2.6 fumarylacetoacetate hydrolase compare
RR42_RS08550 +0.8 2.2 tail fiber protein compare
RR42_RS25030 +0.8 1.3 ABC transporter permease compare
RR42_RS01695 +0.8 4.7 C4-dicarboxylate transporter compare
RR42_RS16510 +0.8 1.5 hypothetical protein compare
RR42_RS22180 +0.8 1.8 hypothetical protein compare
RR42_RS35995 +0.8 2.1 membrane protein compare
RR42_RS09590 +0.8 1.9 hypothetical protein compare
RR42_RS21690 +0.7 0.9 acetyltransferase compare
RR42_RS12130 +0.7 1.6 hypothetical protein compare
RR42_RS19555 +0.7 1.9 hypothetical protein compare
RR42_RS08470 +0.7 1.2 hypothetical protein compare
RR42_RS29790 +0.7 2.5 hypothetical protein compare
RR42_RS04735 +0.7 1.2 hypothetical protein compare
RR42_RS21790 +0.7 1.7 short-chain dehydrogenase compare
RR42_RS16740 +0.7 1.3 hypothetical protein compare
RR42_RS09375 +0.7 0.9 taurine dioxygenase compare
RR42_RS04135 +0.7 1.2 pilus assembly protein CpaB compare
RR42_RS21755 +0.7 1.4 shikimate dehydrogenase compare
RR42_RS02270 +0.7 1.5 hypothetical protein compare
RR42_RS33385 +0.7 3.9 XpsR family transcriptional regulator compare
RR42_RS07900 +0.7 2.8 allantoate amidohydrolase compare
RR42_RS20370 +0.7 0.8 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS15625 +0.7 2.7 tRNA (guanine-N7)-methyltransferase compare
RR42_RS00020 +0.7 2.5 hypothetical protein compare
RR42_RS01630 +0.7 1.1 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS32520 +0.7 1.6 cytochrome C compare
RR42_RS31750 +0.7 1.7 IclR family transcriptional regulator compare
RR42_RS31495 +0.7 1.2 Cro/Cl family transcriptional regulator compare
RR42_RS21125 +0.7 1.4 membrane protein compare
RR42_RS28695 +0.7 1.3 hypothetical protein compare
RR42_RS27480 +0.7 1.7 AraC family transcriptional regulator compare
RR42_RS05895 +0.7 1.9 rhombosortase compare
RR42_RS05755 +0.7 1.0 enoyl-CoA hydratase compare
RR42_RS12835 +0.6 3.1 tRNA pseudouridine synthase B compare
RR42_RS27120 +0.6 1.1 amino acid ABC transporter permease compare
RR42_RS28080 +0.6 2.3 GntR family transcriptional regulator compare
RR42_RS07815 +0.6 1.9 glutamine ABC transporter ATP-binding protein compare
RR42_RS12275 +0.6 1.3 transporter compare
RR42_RS15865 +0.6 1.1 uracil phosphoribosyltransferase compare
RR42_RS32720 +0.6 2.0 glyoxalase compare
RR42_RS16555 +0.6 1.2 cysteine hydrolase compare
RR42_RS20855 +0.6 3.2 cold-shock protein compare
RR42_RS12215 +0.6 1.5 ribonuclease compare
RR42_RS30765 +0.6 0.9 tRNA-Arg compare
RR42_RS00510 +0.6 2.5 transcriptional regulator compare
RR42_RS30355 +0.6 3.0 4-amino-4-deoxy-L-arabinose transferase compare
RR42_RS23220 +0.6 1.6 MarR family transcriptional regulator compare
RR42_RS04000 +0.6 2.7 (2Fe-2S)-binding protein compare
RR42_RS29545 +0.6 2.5 mannosyltransferase compare
RR42_RS07610 +0.6 2.8 acetyl-CoA acetyltransferase compare
RR42_RS34905 +0.6 1.1 enoyl-CoA hydratase compare
RR42_RS32505 +0.6 1.0 sulfonate ABC transporter ATP-binding protein compare
RR42_RS23910 +0.6 2.2 hypothetical protein compare
RR42_RS05750 +0.6 0.9 fructose 2,6-bisphosphatase compare
RR42_RS27705 +0.6 1.3 NAD-dependent deacetylase compare
RR42_RS08450 +0.6 1.2 hypothetical protein compare
RR42_RS02840 +0.6 2.5 cation transporter compare
RR42_RS13260 +0.6 2.7 CoA-transferase compare
RR42_RS09855 +0.6 2.5 hypothetical protein compare
RR42_RS03630 +0.6 0.9 cold-shock protein compare
RR42_RS22990 +0.6 1.9 23S ribosomal RNA compare
RR42_RS23045 +0.6 1.6 LysR family transcriptional regulator compare
RR42_RS10400 +0.6 1.4 hypothetical protein compare
RR42_RS35440 +0.6 3.3 MBL fold metallo-hydrolase compare
RR42_RS06280 +0.6 2.1 membrane protein compare
RR42_RS13200 +0.6 4.4 stationary phase survival protein SurE compare
RR42_RS02930 +0.6 1.3 AsnC family transcriptional regulator compare
RR42_RS36560 +0.6 1.9 ABC transporter substrate-binding protein compare
RR42_RS32830 +0.6 1.2 hypothetical protein compare
RR42_RS32735 +0.6 1.7 3-methylcrotonyl-CoA carboxylase compare
RR42_RS37045 +0.6 1.3 thiamine biosynthesis protein ApbE compare
RR42_RS08330 +0.6 0.8 hypothetical protein compare
RR42_RS15495 +0.6 2.7 hypothetical protein compare
RR42_RS04410 +0.6 3.8 cyanophycin synthetase compare
RR42_RS36315 +0.6 1.7 fructose 2,6-bisphosphatase compare
RR42_RS27885 +0.6 2.1 2-keto-4-pentenoate hydratase compare
RR42_RS10855 +0.6 0.9 diguanylate phosphodiesterase compare
RR42_RS08590 +0.6 1.0 baseplate assembly protein compare
RR42_RS06900 +0.6 2.9 hypothetical protein compare
RR42_RS10445 +0.5 1.9 heat-shock protein Hsp20 compare
RR42_RS35450 +0.5 1.3 hypothetical protein compare
RR42_RS32670 +0.5 0.9 phenol hydroxylase compare
RR42_RS23815 +0.5 2.5 hypothetical protein compare
RR42_RS25600 +0.5 1.1 AraC family transcriptional regulator compare
RR42_RS25620 +0.5 2.9 hypothetical protein compare
RR42_RS23845 +0.5 1.4 hypothetical protein compare
RR42_RS08120 +0.5 1.7 hypothetical protein compare
RR42_RS34265 +0.5 1.5 acetaldehyde dehydrogenase compare
RR42_RS25225 +0.5 1.7 NAD(P) transhydrogenase compare
RR42_RS05310 +0.5 1.2 hypothetical protein compare
RR42_RS35290 +0.5 0.9 Fe-S oxidoreductase compare
RR42_RS23565 +0.5 0.6 flagellar motor switch protein G compare
RR42_RS10195 +0.5 1.1 hypothetical protein compare
RR42_RS23765 +0.5 2.1 tRNA-Gly compare
RR42_RS06930 +0.5 1.5 hypothetical protein compare
RR42_RS08465 +0.5 1.7 hypothetical protein compare
RR42_RS22640 +0.5 2.3 CAAX amino protease compare
RR42_RS15535 +0.5 2.6 hypothetical protein compare
RR42_RS19070 +0.5 1.9 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS24790 +0.5 1.0 LysR family transcriptional regulator compare
RR42_RS10000 +0.5 1.1 LysR family transcriptional regulator compare
RR42_RS06335 +0.5 1.2 cyclophilin compare
RR42_RS09575 +0.5 2.4 hypothetical protein compare
RR42_RS33055 +0.5 2.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
RR42_RS15205 +0.5 1.1 pyridoxamine 5'-phosphate oxidase compare
RR42_RS05425 +0.5 1.8 membrane protein compare
RR42_RS11210 +0.5 2.0 microcystin LR degradation protein MlrC compare
RR42_RS31975 +0.5 1.4 fatty acid--CoA ligase compare
RR42_RS27485 +0.5 1.8 peptidase M20 compare
RR42_RS03005 +0.5 1.1 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS03605 +0.5 2.8 glutathionyl-hydroquinone reductase YqjG compare
RR42_RS29730 +0.5 1.7 hypothetical protein compare
RR42_RS03620 +0.5 1.2 lipid A biosynthesis lauroyl acyltransferase compare
RR42_RS35725 +0.5 1.2 flagellar biosynthesis protein FlgB compare
RR42_RS35790 +0.5 2.1 chemotaxis protein CheD compare
RR42_RS36860 +0.5 2.2 hypothetical protein compare
RR42_RS23640 +0.5 1.5 flagellar biosynthesis protein FliS compare
RR42_RS06230 +0.5 1.2 hypothetical protein compare
RR42_RS31910 +0.5 0.9 acyl-CoA dehydrogenase compare
RR42_RS36415 +0.5 1.1 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS08720 +0.5 2.3 alpha/beta hydrolase compare
RR42_RS20910 +0.5 1.6 hypothetical protein compare
RR42_RS34060 +0.5 1.2 alpha/beta hydrolase compare
RR42_RS26605 +0.5 1.6 hypothetical protein compare
RR42_RS09975 +0.5 2.1 hypothetical protein compare
RR42_RS01700 +0.5 3.4 ATPase compare
RR42_RS00360 +0.5 0.9 Asp/Glu/hydantoin racemase compare
RR42_RS24480 +0.5 1.9 hypothetical protein compare
RR42_RS15955 +0.5 1.5 superoxide dismutase compare
RR42_RS06690 +0.5 2.2 hypothetical protein compare
RR42_RS28295 +0.5 3.0 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data) compare
RR42_RS19675 +0.5 2.3 SoxA protein compare
RR42_RS01705 +0.5 0.9 Fis family transcriptional regulator compare
RR42_RS08105 +0.5 1.1 hypothetical protein compare
RR42_RS14150 +0.5 2.4 haloacid dehalogenase compare
RR42_RS23985 +0.5 2.1 hypothetical protein compare
RR42_RS24215 +0.5 1.9 hypothetical protein compare
RR42_RS07110 +0.5 1.2 hypothetical protein compare
RR42_RS03330 +0.5 1.8 GYD family protein compare
RR42_RS26205 +0.5 1.9 LysR family transcriptional regulator compare
RR42_RS04405 +0.5 2.7 cyanophycin synthetase compare
RR42_RS00180 +0.5 1.4 hypothetical protein compare
RR42_RS31555 +0.5 1.9 hypothetical protein compare
RR42_RS20975 +0.5 1.7 hypothetical protein compare
RR42_RS12690 +0.5 2.6 NC domain protein compare
RR42_RS25615 +0.5 2.6 TetR family transcriptional regulator compare
RR42_RS35195 +0.5 1.9 2,5-diketo-D-gluconic acid reductase compare
RR42_RS08240 +0.5 1.4 DNA-binding protein compare
RR42_RS07040 +0.5 1.2 hypothetical protein compare
RR42_RS22940 +0.5 0.8 TetR family transcriptional regulator compare
RR42_RS31505 +0.5 0.7 hypothetical protein compare
RR42_RS20935 +0.5 2.3 hydrolase compare
RR42_RS19820 +0.5 2.0 membrane protein compare
RR42_RS18560 +0.5 2.0 multidrug transporter MatE compare
RR42_RS23140 +0.5 0.7 peptidylprolyl isomerase compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Glycine in Cupriavidus basilensis FW507-4G11

For nitrogen source Glycine across organisms