Experiment set3IT014 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 5; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -6.1 -4.2 NUDIX domain-containing protein compare
ABZR87_RS08630 -4.8 -5.8 dihydroorotase compare
ABZR87_RS14115 -4.1 -4.5 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS08695 -3.7 -17.4 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS10195 -3.5 -2.4 signal peptidase I compare
ABZR87_RS02640 -3.5 -13.1 diaminopimelate decarboxylase compare
ABZR87_RS08645 -3.3 -1.5 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS01645 -3.3 -5.5 type II 3-dehydroquinate dehydratase compare
ABZR87_RS05305 -3.2 -10.5 TetR family transcriptional regulator compare
ABZR87_RS13705 -3.2 -2.2 integration host factor subunit alpha compare
ABZR87_RS00435 -3.1 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS08795 -3.0 -3.0 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS16125 -2.9 -7.3 heme biosynthesis protein HemY compare
ABZR87_RS08970 -2.9 -7.1 protein TolQ compare
ABZR87_RS07005 -2.9 -2.0 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS02075 -2.9 -2.8 23S ribosomal RNA compare
ABZR87_RS02590 -2.9 -9.3 3-dehydroquinate synthase compare
ABZR87_RS11245 -2.9 -4.4 translational GTPase TypA compare
ABZR87_RS08990 -2.8 -6.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS06400 -2.8 -8.2 response regulator transcription factor compare
ABZR87_RS05100 -2.8 -4.9 RNA polymerase-binding protein DksA compare
ABZR87_RS07050 -2.7 -1.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS09465 -2.6 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14505 -2.6 -3.9 phosphoribosylanthranilate isomerase compare
ABZR87_RS02145 -2.6 -2.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS21950 -2.6 -8.1 hypothetical protein compare
ABZR87_RS22920 -2.6 -4.9 phosphogluconate dehydratase compare
ABZR87_RS12785 -2.5 -3.0 endopeptidase La compare
ABZR87_RS02155 -2.5 -5.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS09450 -2.5 -5.7 prephenate dehydratase compare
ABZR87_RS13475 -2.5 -5.9 PAS domain S-box protein compare
ABZR87_RS08985 -2.5 -9.7 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS10980 -2.5 -1.5 tRNA-Leu compare
ABZR87_RS11140 -2.5 -2.0 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR87_RS07360 -2.5 -9.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS07510 -2.5 -3.8 LysR family transcriptional regulator compare
ABZR87_RS15505 -2.5 -1.6 DNA polymerase III subunit alpha compare
ABZR87_RS04995 -2.4 -1.7 DNA topoisomerase III compare
ABZR87_RS01225 -2.4 -3.3 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS09710 -2.4 -2.8 tRNA-Arg compare
ABZR87_RS14490 -2.4 -7.9 tryptophan synthase subunit alpha compare
ABZR87_RS02375 -2.4 -8.4 cytochrome c1 compare
ABZR87_RS02545 -2.4 -5.3 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS15715 -2.3 -8.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS22970 -2.3 -9.6 cystathionine gamma-synthase family protein compare
ABZR87_RS06715 -2.3 -4.0 PTS sugar transporter subunit IIA compare
ABZR87_RS16170 -2.3 -2.2 argininosuccinate lyase compare
ABZR87_RS13645 -2.3 -1.4 hypothetical protein compare
ABZR87_RS14535 -2.3 -4.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS04975 -2.3 -2.5 peptide deformylase compare
ABZR87_RS02140 -2.2 -12.7 anthranilate synthase component I compare
ABZR87_RS02655 -2.2 -8.1 anti-sigma factor compare
ABZR87_RS13250 -2.2 -2.9 phosphoserine phosphatase SerB compare
ABZR87_RS13790 -2.2 -7.0 chorismate synthase compare
ABZR87_RS01810 -2.2 -3.1 glutamate 5-kinase compare
ABZR87_RS02595 -2.2 -7.4 shikimate kinase compare
ABZR87_RS21285 -2.1 -1.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02380 -2.1 -9.3 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS08980 -2.1 -3.4 cell envelope integrity protein TolA compare
ABZR87_RS09445 -2.0 -7.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS14500 -2.0 -9.7 tryptophan synthase subunit beta compare
ABZR87_RS14540 -2.0 -4.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS07035 -2.0 -5.2 RNase adapter RapZ compare
ABZR87_RS07380 -2.0 -11.2 FAD/FMN-binding oxidoreductase compare
ABZR87_RS09515 -2.0 -2.0 cysteine synthase CysM compare
ABZR87_RS16960 -2.0 -2.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS06350 -2.0 -7.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS19485 -2.0 -2.5 H-NS histone family protein compare
ABZR87_RS14190 -2.0 -8.2 DUF2589 domain-containing protein compare
ABZR87_RS06705 -2.0 -10.5 glutamate--cysteine ligase compare
ABZR87_RS16270 -1.9 -1.5 cold-shock protein compare
ABZR87_RS16185 -1.9 -1.9 dCTP deaminase compare
ABZR87_RS20785 -1.9 -1.5 DUF2783 domain-containing protein compare
ABZR87_RS02160 -1.9 -3.6 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS20875 -1.9 -5.7 LysR family transcriptional regulator compare
ABZR87_RS02565 -1.9 -4.8 glutamate synthase subunit beta compare
ABZR87_RS02535 -1.9 -3.7 phospholipid-binding protein MlaC compare
ABZR87_RS02570 -1.9 -13.9 glutamate synthase-related protein compare
ABZR87_RS05200 -1.9 -11.2 homoserine O-acetyltransferase compare
ABZR87_RS02555 -1.8 -4.4 ABC transporter ATP-binding protein compare
ABZR87_RS07355 -1.8 -4.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS02440 -1.8 -6.6 twin-arginine translocase subunit TatC compare
ABZR87_RS12790 -1.8 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS01980 -1.8 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS01615 -1.8 -1.0 RNB domain-containing ribonuclease compare
ABZR87_RS14965 -1.8 -3.1 DUF3619 family protein compare
ABZR87_RS04865 -1.8 -3.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02220 -1.8 -6.8 redox-regulated ATPase YchF compare
ABZR87_RS02385 -1.8 -3.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS20880 -1.7 -6.6 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02515 -1.7 -2.4 BolA family protein compare
ABZR87_RS02850 -1.7 -2.0 elongation factor Tu compare
ABZR87_RS07625 -1.7 -1.2 Holliday junction branch migration protein RuvA compare
ABZR87_RS11330 -1.7 -2.9 transcriptional repressor LexA compare
ABZR87_RS11195 -1.7 -5.2 pseudouridine synthase compare
ABZR87_RS16055 -1.6 -5.4 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS06845 -1.6 -7.4 heme o synthase compare
ABZR87_RS00795 -1.6 -2.2 site-specific tyrosine recombinase XerD compare
ABZR87_RS09935 -1.6 -1.6 amino acid aminotransferase compare
ABZR87_RS09625 -1.6 -6.7 CobD/CbiB family protein compare
ABZR87_RS03850 -1.6 -5.4 ureidoglycolate lyase compare
ABZR87_RS18105 -1.6 -1.7 hypothetical protein compare
ABZR87_RS12955 -1.6 -3.9 terminase endonuclease subunit compare
ABZR87_RS10190 -1.6 -5.2 translation elongation factor 4 compare
ABZR87_RS01450 -1.6 -3.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS00875 -1.6 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS19675 -1.6 -1.4 cold-shock protein compare
ABZR87_RS11760 -1.6 -1.2 membrane protein compare
ABZR87_RS13285 -1.6 -8.0 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS04940 -1.5 -4.0 PAS domain-containing sensor histidine kinase compare
ABZR87_RS05205 -1.5 -4.6 methionine biosynthesis protein MetW compare
ABZR87_RS12150 -1.5 -2.7 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS01255 -1.5 -7.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS00360 -1.5 -2.0 acyl-CoA desaturase compare
ABZR87_RS06745 -1.5 -3.5 S41 family peptidase compare
ABZR87_RS04105 -1.5 -3.4 ATP synthase subunit I compare
ABZR87_RS14510 -1.5 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS09615 -1.5 -1.0 50S ribosomal protein L19 compare
ABZR87_RS02550 -1.5 -3.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS17145 -1.5 -8.7 AMP nucleosidase compare
ABZR87_RS00340 -1.5 -1.4 50S ribosomal protein L33 compare
ABZR87_RS10930 -1.4 -1.7 outer membrane protein assembly factor BamB compare
ABZR87_RS05570 -1.4 -4.8 lysophospholipid acyltransferase family protein compare
ABZR87_RS00295 -1.4 -2.5 ABC transporter ATP-binding protein compare
ABZR87_RS17405 -1.4 -3.0 nucleobase:cation symporter-2 family protein compare
ABZR87_RS12950 -1.4 -4.4 phage major capsid protein, P2 family compare
ABZR87_RS06385 -1.4 -6.4 CHASE3 domain-containing protein compare
ABZR87_RS06710 -1.4 -9.0 glutathione synthase compare
ABZR87_RS13300 -1.4 -4.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS20495 -1.4 -1.5 hypothetical protein compare
ABZR87_RS04270 -1.4 -3.6 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS21245 -1.4 -1.2 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS14530 -1.4 -4.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS16730 -1.4 -3.5 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS05645 -1.4 -3.0 SDR family oxidoreductase compare
ABZR87_RS16735 -1.4 -8.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS15405 -1.4 -2.3 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS13290 -1.3 -2.4 3-ketoacyl-ACP reductase compare
ABZR87_RS14330 -1.3 -1.0 hypothetical protein compare
ABZR87_RS04880 -1.3 -6.3 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS08700 -1.3 -5.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS11755 -1.3 -1.7 arsenate reductase compare
ABZR87_RS00210 -1.3 -5.2 nitrite/sulfite reductase compare
ABZR87_RS12795 -1.3 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS03430 -1.3 -7.9 type II secretion system minor pseudopilin GspK compare
ABZR87_RS14950 -1.3 -0.9 acetolactate synthase small subunit compare
ABZR87_RS07055 -1.3 -5.4 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS06840 -1.3 -5.8 COX15/CtaA family protein compare
ABZR87_RS01270 -1.3 -4.9 ATP-dependent DNA helicase RecG compare
ABZR87_RS07485 -1.3 -2.0 acetyl-CoA C-acyltransferase compare
ABZR87_RS01685 -1.3 -3.7 histone H1-like DNA-binding protein compare
ABZR87_RS18320 -1.3 -2.8 HEAT repeat domain-containing protein compare
ABZR87_RS12960 -1.3 -1.3 head completion/stabilization protein compare
ABZR87_RS01275 -1.3 -3.9 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS14375 -1.3 -2.1 fumarate hydratase compare
ABZR87_RS06355 -1.3 -4.6 SPOR domain-containing protein compare
ABZR87_RS20730 -1.3 -1.0 hypothetical protein compare
ABZR87_RS15705 -1.3 -2.3 UvrD-helicase domain-containing protein compare
ABZR87_RS02680 -1.3 -6.3 c-type cytochrome compare
ABZR87_RS01110 -1.3 -5.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS15240 -1.3 -2.1 YicC/YloC family endoribonuclease compare
ABZR87_RS17310 -1.3 -4.3 PadR family transcriptional regulator compare
ABZR87_RS02485 -1.3 -1.1 MarC family protein compare
ABZR87_RS04785 -1.3 -5.8 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS02165 -1.2 -3.8 CYTH domain-containing protein compare
ABZR87_RS10525 -1.2 -1.5 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS21955 -1.2 -4.1 hypothetical protein compare
ABZR87_RS11815 -1.2 -5.8 [protein-PII] uridylyltransferase compare
ABZR87_RS11440 -1.2 -3.6 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS05965 -1.2 -2.0 hemerythrin domain-containing protein compare
ABZR87_RS02540 -1.2 -3.7 VacJ family lipoprotein compare
ABZR87_RS08610 -1.2 -4.1 YqgE/AlgH family protein compare
ABZR87_RS20665 -1.2 -1.7 IclR family transcriptional regulator compare
ABZR87_RS10170 -1.2 -3.1 RseA family anti-sigma factor compare
ABZR87_RS03460 -1.2 -6.4 type II secretion system inner membrane protein GspF compare
ABZR87_RS10400 -1.2 -0.8 hypothetical protein compare
ABZR87_RS03410 -1.2 -4.5 type II secretion system major pseudopilin GspG compare
ABZR87_RS00200 -1.2 -3.2 phosphoadenylyl-sulfate reductase compare
ABZR87_RS07965 -1.2 -2.9 recombinase RecA compare
ABZR87_RS14970 -1.1 -2.1 DUF3106 domain-containing protein compare
ABZR87_RS16660 -1.1 -3.0 helix-turn-helix domain-containing protein compare
ABZR87_RS03450 -1.1 -6.9 type II secretion system secretin GspD compare
ABZR87_RS11675 -1.1 -2.5 disulfide bond formation protein B compare
ABZR87_RS12965 -1.1 -1.6 tail protein X compare
ABZR87_RS17525 -1.1 -7.1 helix-turn-helix domain-containing protein compare
ABZR87_RS09000 -1.1 -4.5 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS18695 -1.1 -4.3 sugar-binding transcriptional regulator compare
ABZR87_RS11470 -1.1 -3.0 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS04265 -1.1 -5.3 phenylalanine 4-monooxygenase compare
ABZR87_RS03665 -1.1 -3.0 MarR family transcriptional regulator compare
ABZR87_RS13315 -1.1 -5.7 RluA family pseudouridine synthase compare
ABZR87_RS00220 -1.1 -5.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS20155 -1.1 -2.9 type VI secretion system-associated protein TagF compare
ABZR87_RS13400 -1.1 -1.1 hypothetical protein compare
ABZR87_RS11420 -1.0 -0.7 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS09975 -1.0 -2.7 Fe-S cluster assembly transcriptional regulator IscR compare
ABZR87_RS12945 -1.0 -2.4 GPO family capsid scaffolding protein compare
ABZR87_RS14605 -1.0 -7.0 aconitate hydratase AcnA compare
ABZR87_RS14455 -1.0 -1.3 nodulation factor ABC transporter ATP-binding protein NodI compare
ABZR87_RS15680 -1.0 -4.4 DNA polymerase I compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in rhizosphere experiments