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Experiment set3IT014 for
Ralstonia sp. UNC404CL21Col
Compare to:
Go
rhizosphere sample 5; outgrowth in LB
200 most important genes:
gene
name
fitness
t score
description
ABZR87
_RS21795
-6.1
-4.2
NUDIX domain-containing protein
compare
ABZR87
_RS08630
-4.8
-5.8
dihydroorotase
compare
ABZR87
_RS14115
-4.1
-4.5
ATP-dependent zinc metalloprotease FtsH
compare
ABZR87
_RS08695
-3.7
-17.4
capsular polysaccharide biosynthesis protein CapF
compare
ABZR87
_RS10195
-3.5
-2.4
signal peptidase I
compare
ABZR87
_RS02640
-3.5
-13.1
diaminopimelate decarboxylase
compare
ABZR87
_RS08645
-3.3
-1.5
dTDP-glucose 4,6-dehydratase
compare
ABZR87
_RS01645
-3.3
-5.5
type II 3-dehydroquinate dehydratase
compare
ABZR87
_RS05305
-3.2
-10.5
TetR family transcriptional regulator
compare
ABZR87
_RS13705
-3.2
-2.2
integration host factor subunit alpha
compare
ABZR87
_RS00435
-3.1
-3.0
ATP-dependent Clp protease ATP-binding subunit ClpA
compare
ABZR87
_RS08795
-3.0
-3.0
undecaprenyl-diphosphate phosphatase
compare
ABZR87
_RS16125
-2.9
-7.3
heme biosynthesis protein HemY
compare
ABZR87
_RS08970
-2.9
-7.1
protein TolQ
compare
ABZR87
_RS07005
-2.9
-2.0
lipoprotein insertase outer membrane protein LolB
compare
ABZR87
_RS02075
-2.9
-2.8
23S ribosomal RNA
compare
ABZR87
_RS02590
-2.9
-9.3
3-dehydroquinate synthase
compare
ABZR87
_RS11245
-2.9
-4.4
translational GTPase TypA
compare
ABZR87
_RS08990
-2.8
-6.0
peptidoglycan-associated lipoprotein Pal
compare
ABZR87
_RS06400
-2.8
-8.2
response regulator transcription factor
compare
ABZR87
_RS05100
-2.8
-4.9
RNA polymerase-binding protein DksA
compare
ABZR87
_RS07050
-2.7
-1.8
PTS IIA-like nitrogen regulatory protein PtsN
compare
ABZR87
_RS09465
-2.6
-6.1
3-phosphoshikimate 1-carboxyvinyltransferase
compare
ABZR87
_RS14505
-2.6
-3.9
phosphoribosylanthranilate isomerase
compare
ABZR87
_RS02145
-2.6
-2.4
aminodeoxychorismate/anthranilate synthase component II
compare
ABZR87
_RS21950
-2.6
-8.1
hypothetical protein
compare
ABZR87
_RS22920
-2.6
-4.9
phosphogluconate dehydratase
compare
ABZR87
_RS12785
-2.5
-3.0
endopeptidase La
compare
ABZR87
_RS02155
-2.5
-5.8
anthranilate phosphoribosyltransferase
compare
ABZR87
_RS09450
-2.5
-5.7
prephenate dehydratase
compare
ABZR87
_RS13475
-2.5
-5.9
PAS domain S-box protein
compare
ABZR87
_RS08985
-2.5
-9.7
Tol-Pal system beta propeller repeat protein TolB
compare
ABZR87
_RS10980
-2.5
-1.5
tRNA-Leu
compare
ABZR87
_RS11140
-2.5
-2.0
cbb3-type cytochrome oxidase assembly protein CcoS
compare
ABZR87
_RS07360
-2.5
-9.3
threonine ammonia-lyase, biosynthetic
compare
ABZR87
_RS07510
-2.5
-3.8
LysR family transcriptional regulator
compare
ABZR87
_RS15505
-2.5
-1.6
DNA polymerase III subunit alpha
compare
ABZR87
_RS04995
-2.4
-1.7
DNA topoisomerase III
compare
ABZR87
_RS01225
-2.4
-3.3
YggS family pyridoxal phosphate-dependent enzyme
compare
ABZR87
_RS09710
-2.4
-2.8
tRNA-Arg
compare
ABZR87
_RS14490
-2.4
-7.9
tryptophan synthase subunit alpha
compare
ABZR87
_RS02375
-2.4
-8.4
cytochrome c1
compare
ABZR87
_RS02545
-2.4
-5.3
outer membrane lipid asymmetry maintenance protein MlaD
compare
ABZR87
_RS15715
-2.3
-8.0
UTP--glucose-1-phosphate uridylyltransferase GalU
compare
ABZR87
_RS22970
-2.3
-9.6
cystathionine gamma-synthase family protein
compare
ABZR87
_RS06715
-2.3
-4.0
PTS sugar transporter subunit IIA
compare
ABZR87
_RS16170
-2.3
-2.2
argininosuccinate lyase
compare
ABZR87
_RS13645
-2.3
-1.4
hypothetical protein
compare
ABZR87
_RS14535
-2.3
-4.6
3-isopropylmalate dehydratase small subunit
compare
ABZR87
_RS04975
-2.3
-2.5
peptide deformylase
compare
ABZR87
_RS02140
-2.2
-12.7
anthranilate synthase component I
compare
ABZR87
_RS02655
-2.2
-8.1
anti-sigma factor
compare
ABZR87
_RS13250
-2.2
-2.9
phosphoserine phosphatase SerB
compare
ABZR87
_RS13790
-2.2
-7.0
chorismate synthase
compare
ABZR87
_RS01810
-2.2
-3.1
glutamate 5-kinase
compare
ABZR87
_RS02595
-2.2
-7.4
shikimate kinase
compare
ABZR87
_RS21285
-2.1
-1.9
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS02380
-2.1
-9.3
cytochrome bc complex cytochrome b subunit
compare
ABZR87
_RS08980
-2.1
-3.4
cell envelope integrity protein TolA
compare
ABZR87
_RS09445
-2.0
-7.5
3-phosphoserine/phosphohydroxythreonine transaminase
compare
ABZR87
_RS14500
-2.0
-9.7
tryptophan synthase subunit beta
compare
ABZR87
_RS14540
-2.0
-4.6
3-isopropylmalate dehydratase large subunit
compare
ABZR87
_RS07035
-2.0
-5.2
RNase adapter RapZ
compare
ABZR87
_RS07380
-2.0
-11.2
FAD/FMN-binding oxidoreductase
compare
ABZR87
_RS09515
-2.0
-2.0
cysteine synthase CysM
compare
ABZR87
_RS16960
-2.0
-2.7
HAMP domain-containing sensor histidine kinase
compare
ABZR87
_RS06350
-2.0
-7.6
thiol:disulfide interchange protein DsbA/DsbL
compare
ABZR87
_RS19485
-2.0
-2.5
H-NS histone family protein
compare
ABZR87
_RS14190
-2.0
-8.2
DUF2589 domain-containing protein
compare
ABZR87
_RS06705
-2.0
-10.5
glutamate--cysteine ligase
compare
ABZR87
_RS16270
-1.9
-1.5
cold-shock protein
compare
ABZR87
_RS16185
-1.9
-1.9
dCTP deaminase
compare
ABZR87
_RS20785
-1.9
-1.5
DUF2783 domain-containing protein
compare
ABZR87
_RS02160
-1.9
-3.6
indole-3-glycerol phosphate synthase TrpC
compare
ABZR87
_RS20875
-1.9
-5.7
LysR family transcriptional regulator
compare
ABZR87
_RS02565
-1.9
-4.8
glutamate synthase subunit beta
compare
ABZR87
_RS02535
-1.9
-3.7
phospholipid-binding protein MlaC
compare
ABZR87
_RS02570
-1.9
-13.9
glutamate synthase-related protein
compare
ABZR87
_RS05200
-1.9
-11.2
homoserine O-acetyltransferase
compare
ABZR87
_RS02555
-1.8
-4.4
ABC transporter ATP-binding protein
compare
ABZR87
_RS07355
-1.8
-4.5
NADPH-dependent 7-cyano-7-deazaguanine reductase QueF
compare
ABZR87
_RS02440
-1.8
-6.6
twin-arginine translocase subunit TatC
compare
ABZR87
_RS12790
-1.8
-2.2
ATP-dependent Clp protease ATP-binding subunit ClpX
compare
ABZR87
_RS01980
-1.8
-1.8
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
compare
ABZR87
_RS01615
-1.8
-1.0
RNB domain-containing ribonuclease
compare
ABZR87
_RS14965
-1.8
-3.1
DUF3619 family protein
compare
ABZR87
_RS04865
-1.8
-3.4
methylenetetrahydrofolate reductase [NAD(P)H]
compare
ABZR87
_RS02220
-1.8
-6.8
redox-regulated ATPase YchF
compare
ABZR87
_RS02385
-1.8
-3.9
ubiquinol-cytochrome c reductase iron-sulfur subunit
compare
ABZR87
_RS20880
-1.7
-6.6
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
compare
ABZR87
_RS02515
-1.7
-2.4
BolA family protein
compare
ABZR87
_RS02850
-1.7
-2.0
elongation factor Tu
compare
ABZR87
_RS07625
-1.7
-1.2
Holliday junction branch migration protein RuvA
compare
ABZR87
_RS11330
-1.7
-2.9
transcriptional repressor LexA
compare
ABZR87
_RS11195
-1.7
-5.2
pseudouridine synthase
compare
ABZR87
_RS16055
-1.6
-5.4
outer membrane lipoprotein chaperone LolA
compare
ABZR87
_RS06845
-1.6
-7.4
heme o synthase
compare
ABZR87
_RS00795
-1.6
-2.2
site-specific tyrosine recombinase XerD
compare
ABZR87
_RS09935
-1.6
-1.6
amino acid aminotransferase
compare
ABZR87
_RS09625
-1.6
-6.7
CobD/CbiB family protein
compare
ABZR87
_RS03850
-1.6
-5.4
ureidoglycolate lyase
compare
ABZR87
_RS18105
-1.6
-1.7
hypothetical protein
compare
ABZR87
_RS12955
-1.6
-3.9
terminase endonuclease subunit
compare
ABZR87
_RS10190
-1.6
-5.2
translation elongation factor 4
compare
ABZR87
_RS01450
-1.6
-3.8
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
compare
ABZR87
_RS00875
-1.6
-2.1
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
compare
ABZR87
_RS19675
-1.6
-1.4
cold-shock protein
compare
ABZR87
_RS11760
-1.6
-1.2
membrane protein
compare
ABZR87
_RS13285
-1.6
-8.0
polyhydroxyalkanoate synthesis repressor PhaR
compare
ABZR87
_RS04940
-1.5
-4.0
PAS domain-containing sensor histidine kinase
compare
ABZR87
_RS05205
-1.5
-4.6
methionine biosynthesis protein MetW
compare
ABZR87
_RS12150
-1.5
-2.7
6-carboxytetrahydropterin synthase QueD
compare
ABZR87
_RS01255
-1.5
-7.6
LysR substrate-binding domain-containing protein
compare
ABZR87
_RS00360
-1.5
-2.0
acyl-CoA desaturase
compare
ABZR87
_RS06745
-1.5
-3.5
S41 family peptidase
compare
ABZR87
_RS04105
-1.5
-3.4
ATP synthase subunit I
compare
ABZR87
_RS14510
-1.5
-2.9
tRNA pseudouridine(38-40) synthase TruA
compare
ABZR87
_RS09615
-1.5
-1.0
50S ribosomal protein L19
compare
ABZR87
_RS02550
-1.5
-3.5
lipid asymmetry maintenance ABC transporter permease subunit MlaE
compare
ABZR87
_RS17145
-1.5
-8.7
AMP nucleosidase
compare
ABZR87
_RS00340
-1.5
-1.4
50S ribosomal protein L33
compare
ABZR87
_RS10930
-1.4
-1.7
outer membrane protein assembly factor BamB
compare
ABZR87
_RS05570
-1.4
-4.8
lysophospholipid acyltransferase family protein
compare
ABZR87
_RS00295
-1.4
-2.5
ABC transporter ATP-binding protein
compare
ABZR87
_RS17405
-1.4
-3.0
nucleobase:cation symporter-2 family protein
compare
ABZR87
_RS12950
-1.4
-4.4
phage major capsid protein, P2 family
compare
ABZR87
_RS06385
-1.4
-6.4
CHASE3 domain-containing protein
compare
ABZR87
_RS06710
-1.4
-9.0
glutathione synthase
compare
ABZR87
_RS13300
-1.4
-4.3
class I poly(R)-hydroxyalkanoic acid synthase
compare
ABZR87
_RS20495
-1.4
-1.5
hypothetical protein
compare
ABZR87
_RS04270
-1.4
-3.6
4a-hydroxytetrahydrobiopterin dehydratase
compare
ABZR87
_RS21245
-1.4
-1.2
1,2-phenylacetyl-CoA epoxidase subunit PaaD
compare
ABZR87
_RS14530
-1.4
-4.7
3-isopropylmalate dehydrogenase
compare
ABZR87
_RS16730
-1.4
-3.5
2-methylaconitate cis-trans isomerase PrpF
compare
ABZR87
_RS05645
-1.4
-3.0
SDR family oxidoreductase
compare
ABZR87
_RS16735
-1.4
-8.7
Fe/S-dependent 2-methylisocitrate dehydratase AcnD
compare
ABZR87
_RS15405
-1.4
-2.3
YebC/PmpR family DNA-binding transcriptional regulator
compare
ABZR87
_RS13290
-1.3
-2.4
3-ketoacyl-ACP reductase
compare
ABZR87
_RS14330
-1.3
-1.0
hypothetical protein
compare
ABZR87
_RS04880
-1.3
-6.3
5-formyltetrahydrofolate cyclo-ligase
compare
ABZR87
_RS08700
-1.3
-5.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
compare
ABZR87
_RS11755
-1.3
-1.7
arsenate reductase
compare
ABZR87
_RS00210
-1.3
-5.2
nitrite/sulfite reductase
compare
ABZR87
_RS12795
-1.3
-2.6
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
compare
ABZR87
_RS03430
-1.3
-7.9
type II secretion system minor pseudopilin GspK
compare
ABZR87
_RS14950
-1.3
-0.9
acetolactate synthase small subunit
compare
ABZR87
_RS07055
-1.3
-5.4
ribosome-associated translation inhibitor RaiA
compare
ABZR87
_RS06840
-1.3
-5.8
COX15/CtaA family protein
compare
ABZR87
_RS01270
-1.3
-4.9
ATP-dependent DNA helicase RecG
compare
ABZR87
_RS07485
-1.3
-2.0
acetyl-CoA C-acyltransferase
compare
ABZR87
_RS01685
-1.3
-3.7
histone H1-like DNA-binding protein
compare
ABZR87
_RS18320
-1.3
-2.8
HEAT repeat domain-containing protein
compare
ABZR87
_RS12960
-1.3
-1.3
head completion/stabilization protein
compare
ABZR87
_RS01275
-1.3
-3.9
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
compare
ABZR87
_RS14375
-1.3
-2.1
fumarate hydratase
compare
ABZR87
_RS06355
-1.3
-4.6
SPOR domain-containing protein
compare
ABZR87
_RS20730
-1.3
-1.0
hypothetical protein
compare
ABZR87
_RS15705
-1.3
-2.3
UvrD-helicase domain-containing protein
compare
ABZR87
_RS02680
-1.3
-6.3
c-type cytochrome
compare
ABZR87
_RS01110
-1.3
-5.0
3-deoxy-7-phosphoheptulonate synthase AroG
compare
ABZR87
_RS15240
-1.3
-2.1
YicC/YloC family endoribonuclease
compare
ABZR87
_RS17310
-1.3
-4.3
PadR family transcriptional regulator
compare
ABZR87
_RS02485
-1.3
-1.1
MarC family protein
compare
ABZR87
_RS04785
-1.3
-5.8
phosphomethylpyrimidine synthase ThiC
compare
ABZR87
_RS02165
-1.2
-3.8
CYTH domain-containing protein
compare
ABZR87
_RS10525
-1.2
-1.5
L-threonylcarbamoyladenylate synthase
compare
ABZR87
_RS21955
-1.2
-4.1
hypothetical protein
compare
ABZR87
_RS11815
-1.2
-5.8
[protein-PII] uridylyltransferase
compare
ABZR87
_RS11440
-1.2
-3.6
pyridoxal phosphate-dependent aminotransferase
compare
ABZR87
_RS05965
-1.2
-2.0
hemerythrin domain-containing protein
compare
ABZR87
_RS02540
-1.2
-3.7
VacJ family lipoprotein
compare
ABZR87
_RS08610
-1.2
-4.1
YqgE/AlgH family protein
compare
ABZR87
_RS20665
-1.2
-1.7
IclR family transcriptional regulator
compare
ABZR87
_RS10170
-1.2
-3.1
RseA family anti-sigma factor
compare
ABZR87
_RS03460
-1.2
-6.4
type II secretion system inner membrane protein GspF
compare
ABZR87
_RS10400
-1.2
-0.8
hypothetical protein
compare
ABZR87
_RS03410
-1.2
-4.5
type II secretion system major pseudopilin GspG
compare
ABZR87
_RS00200
-1.2
-3.2
phosphoadenylyl-sulfate reductase
compare
ABZR87
_RS07965
-1.2
-2.9
recombinase RecA
compare
ABZR87
_RS14970
-1.1
-2.1
DUF3106 domain-containing protein
compare
ABZR87
_RS16660
-1.1
-3.0
helix-turn-helix domain-containing protein
compare
ABZR87
_RS03450
-1.1
-6.9
type II secretion system secretin GspD
compare
ABZR87
_RS11675
-1.1
-2.5
disulfide bond formation protein B
compare
ABZR87
_RS12965
-1.1
-1.6
tail protein X
compare
ABZR87
_RS17525
-1.1
-7.1
helix-turn-helix domain-containing protein
compare
ABZR87
_RS09000
-1.1
-4.5
7-cyano-7-deazaguanine synthase QueC
compare
ABZR87
_RS18695
-1.1
-4.3
sugar-binding transcriptional regulator
compare
ABZR87
_RS11470
-1.1
-3.0
molybdenum cofactor biosynthesis protein MoaE
compare
ABZR87
_RS04265
-1.1
-5.3
phenylalanine 4-monooxygenase
compare
ABZR87
_RS03665
-1.1
-3.0
MarR family transcriptional regulator
compare
ABZR87
_RS13315
-1.1
-5.7
RluA family pseudouridine synthase
compare
ABZR87
_RS00220
-1.1
-5.6
CysB family HTH-type transcriptional regulator
compare
ABZR87
_RS20155
-1.1
-2.9
type VI secretion system-associated protein TagF
compare
ABZR87
_RS13400
-1.1
-1.1
hypothetical protein
compare
ABZR87
_RS11420
-1.0
-0.7
DegT/DnrJ/EryC1/StrS aminotransferase family protein
compare
ABZR87
_RS09975
-1.0
-2.7
Fe-S cluster assembly transcriptional regulator IscR
compare
ABZR87
_RS12945
-1.0
-2.4
GPO family capsid scaffolding protein
compare
ABZR87
_RS14605
-1.0
-7.0
aconitate hydratase AcnA
compare
ABZR87
_RS14455
-1.0
-1.3
nodulation factor ABC transporter ATP-binding protein NodI
compare
ABZR87
_RS15680
-1.0
-4.4
DNA polymerase I
compare
Specific Phenotypes
None in this experiment
For Ralstonia sp. UNC404CL21Col in rhizosphere experiments