Experiment set3IT014 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Puromycin dihydrochloride 0.003 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -5.5 -5.3 chromosomal replication initiator protein DnaA compare
BBR_RS10625 -4.7 -3.2 FHA domain-containing protein compare
BBR_RS13070 -4.3 -2.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS12545 -3.9 -3.8 DUF4012 domain-containing protein compare
BBR_RS19760 -3.5 -2.4 polysaccharide ABC transporter ATPase compare
BBR_RS11540 -3.4 -4.1 DUF1727 domain-containing protein compare
BBR_RS16675 -3.3 -4.0 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS19160 -3.2 -2.2 phosphate ABC transporter permease subunit PstC compare
BBR_RS15090 -2.7 -1.8 type II 3-dehydroquinate dehydratase compare
BBR_RS18050 -2.7 -3.2 threonylcarbamoyl-AMP synthase compare
BBR_RS14540 -2.6 -3.1 Na+/H+ antiporter NhaA compare
BBR_RS12590 -2.5 -2.8 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS17155 -2.5 -2.0 cell division protein SepF compare
BBR_RS21015 -2.4 -1.4 hypothetical protein compare
BBR_RS15785 -2.4 -2.8 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS13805 -2.4 -3.2 hypothetical protein compare
BBR_RS19190 -2.3 -7.2 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS16955 -2.3 -3.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS15080 -2.2 -3.0 chorismate synthase compare
BBR_RS16750 -2.2 -2.6 ParA family protein compare
BBR_RS19465 -2.2 -3.2 ribonuclease E/G compare
BBR_RS12235 -2.2 -1.8 hypothetical protein compare
BBR_RS19125 -2.1 -9.3 hypothetical protein compare
BBR_RS10620 -2.0 -4.1 phosphoprotein phosphatase compare
BBR_RS11720 -2.0 -4.8 DUF2469 domain-containing protein compare
BBR_RS14265 -2.0 -5.1 Solute-binding protein of ABC transporter system for metals compare
BBR_RS18180 -2.0 -8.5 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS14140 -2.0 -1.7 Ppx/GppA family phosphatase compare
BBR_RS15085 -1.9 -1.7 3-dehydroquinate synthase compare
BBR_RS14370 -1.9 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS13490 -1.9 -2.2 30S ribosomal protein S7 compare
BBR_RS18045 -1.9 -1.9 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS15440 -1.9 -4.6 orotidine-5'-phosphate decarboxylase compare
BBR_RS13035 -1.9 -1.3 ABC transporter permease compare
BBR_RS14495 -1.8 -2.7 trigger factor compare
BBR_RS15435 -1.8 -3.6 dihydroorotase compare
BBR_RS19815 -1.7 -13.1 ABC transporter permease compare
BBR_RS11185 -1.7 -3.3 type I DNA topoisomerase compare
BBR_RS16275 -1.7 -2.2 leucine--tRNA ligase compare
BBR_RS16960 -1.7 -3.3 transcriptional regulator MraZ compare
BBR_RS12605 -1.7 -3.6 glycosyltransferase family 2 protein compare
BBR_RS13370 -1.7 -2.9 phosphoribosylamine--glycine ligase compare
BBR_RS19820 -1.6 -12.8 ATP-binding protein of ABC transporter system compare
BBR_RS12045 -1.6 -4.9 hypothetical protein compare
BBR_RS15520 -1.6 -3.3 shikimate 5-dehydrogenase compare
BBR_RS14205 -1.6 -2.6 hypothetical protein compare
BBR_RS15070 -1.6 -3.1 endolytic transglycosylase MltG compare
BBR_RS13635 -1.6 -6.2 carbamoyl-phosphate synthase large subunit compare
BBR_RS16950 -1.5 -1.5 hypothetical protein compare
BBR_RS15425 -1.5 -2.7 aspartate carbamoyltransferase compare
BBR_RS15805 -1.5 -5.0 prolipoprotein diacylglyceryl transferase compare
BBR_RS16625 -1.5 -3.1 DUF3710 domain-containing protein compare
BBR_RS19070 -1.5 -1.3 50S ribosomal protein L33 compare
BBR_RS18215 -1.5 -6.9 AI-2E family transporter compare
BBR_RS19450 -1.4 -1.3 GTPase ObgE compare
BBR_RS14190 -1.4 -5.4 transcriptional regulator compare
BBR_RS10940 -1.4 -8.5 DedA family protein compare
BBR_RS18690 -1.4 -6.0 diacylglycerol kinase compare
BBR_RS19120 -1.4 -6.8 helicase compare
BBR_RS18990 -1.3 -2.1 AbrB family transcriptional regulator compare
BBR_RS16490 -1.3 -4.0 polyprenyl synthase compare
BBR_RS16425 -1.3 -1.9 DUF3071 domain-containing protein compare
BBR_RS11590 -1.3 -1.0 30S ribosomal protein S18 compare
BBR_RS19435 -1.3 -2.1 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS18725 -1.3 -2.1 ribonuclease HI compare
BBR_RS19540 -1.3 -1.2 homoserine dehydrogenase compare
BBR_RS13630 -1.3 -4.1 carbamoyl-phosphate synthase small subunit compare
BBR_RS17290 -1.2 -5.1 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS20465 -1.2 -5.2 chromosome partitioning protein compare
BBR_RS17490 -1.2 -7.8 MoxR family ATPase compare
BBR_RS17495 -1.2 -6.4 DUF58 domain-containing protein compare
BBR_RS11770 -1.2 -2.7 chorismate mutase compare
BBR_RS20460 -1.2 -3.3 chromosome partitioning protein ParB compare
BBR_RS20750 -1.1 -2.5 GntR family transcriptional regulator compare
BBR_RS10580 -1.1 -2.3 septation inhibitor protein compare
BBR_RS12305 -1.1 -3.9 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS16400 -1.1 -2.2 hypothetical protein compare
BBR_RS16905 -1.1 -3.6 hypothetical protein compare
BBR_RS12355 -1.1 -2.9 ribonuclease III compare
BBR_RS14240 -1.1 -3.9 1,4-alpha-glucan branching protein GlgB compare
BBR_RS13040 -1.1 -0.7 CHAP domain-containing protein compare
BBR_RS20830 -1.1 -1.8 hypothetical protein compare
BBR_RS14765 -1.1 -1.3 hypothetical protein compare
BBR_RS19165 -1.1 -2.0 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS14070 -1.0 -3.9 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS17500 -1.0 -5.1 hypothetical protein compare
BBR_RS14625 -1.0 -4.0 pyrroline-5-carboxylate reductase compare
BBR_RS17505 -1.0 -5.2 VWA domain-containing protein compare
BBR_RS14230 -1.0 -2.8 HAMP domain-containing histidine kinase compare
BBR_RS12500 -1.0 -1.0 sugar ABC transporter permease compare
BBR_RS11510 -1.0 -2.2 signal recognition particle-docking protein FtsY compare
BBR_RS12375 -1.0 -1.1 pantetheine-phosphate adenylyltransferase compare
BBR_RS13910 -1.0 -0.8 arginine repressor compare
BBR_RS10905 -1.0 -3.7 nucleotide exchange factor GrpE compare
BBR_RS20455 -1.0 -4.2 thioredoxin-disulfide reductase compare
BBR_RS19905 -1.0 -0.9 methionine--tRNA ligase compare
BBR_RS17515 -1.0 -4.2 hypothetical protein compare
BBR_RS13735 -1.0 -1.2 Lon protease compare
BBR_RS16245 -0.9 -2.0 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS11175 -0.9 -6.8 penicillin-binding protein compare
BBR_RS16220 -0.9 -1.1 DNA cytosine methyltransferase compare
BBR_RS12380 -0.9 -2.4 DUF3039 domain-containing protein compare
BBR_RS18735 -0.9 -5.0 hypothetical protein compare
BBR_RS15655 -0.9 -2.7 Holliday junction branch migration protein RuvA compare
BBR_RS17510 -0.9 -3.8 VWA domain-containing protein compare
BBR_RS16430 -0.9 -2.1 nucleotide pyrophosphatase compare
BBR_RS19395 -0.9 -1.7 hypothetical protein compare
BBR_RS19155 -0.9 -4.4 phosphate ABC transporter, permease protein PstA compare
BBR_RS18565 -0.9 -0.8 CHAP domain-containing protein compare
BBR_RS13750 -0.8 -1.8 DivIVA domain-containing protein compare
BBR_RS16135 -0.8 -1.8 peptide deformylase compare
BBR_RS20775 -0.8 -1.7 DUF4230 domain-containing protein compare
BBR_RS13980 -0.8 -3.6 HD domain-containing protein compare
BBR_RS19755 -0.8 -5.1 glycosyl transferase compare
BBR_RS19640 -0.8 -0.8 phosphoesterase compare
BBR_RS18575 -0.8 -1.8 hypothetical protein compare
BBR_RS16020 -0.8 -1.0 hypothetical protein compare
BBR_RS15020 -0.8 -1.6 membrane protein compare
BBR_RS14870 -0.8 -2.2 histidine phosphatase family protein compare
BBR_RS16845 -0.8 -1.0 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS10615 -0.7 -2.8 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS20955 -0.7 -0.6 hypothetical protein compare
BBR_RS15130 -0.7 -1.4 metal-sulfur cluster assembly factor compare
BBR_RS11470 -0.7 -0.9 6-phosphogluconolactonase compare
BBR_RS13030 -0.7 -1.0 cell division ATP-binding protein FtsE compare
BBR_RS20415 -0.7 -5.3 G5 domain-containing protein compare
BBR_RS19535 -0.7 -5.1 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS20435 -0.7 -0.6 CCA tRNA nucleotidyltransferase compare
BBR_RS14275 -0.7 -1.1 30S ribosomal protein S1 compare
BBR_RS19740 -0.7 -5.7 DUF2142 domain-containing protein compare
BBR_RS12785 -0.6 -1.9 transcriptional regulator compare
BBR_RS18185 -0.6 -2.8 hypoxanthine phosphoribosyltransferase compare
BBR_RS18795 -0.6 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS14210 -0.6 -0.4 hypothetical protein compare
BBR_RS12975 -0.6 -4.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS14075 -0.6 -3.7 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS19390 -0.6 -0.8 hypothetical protein compare
BBR_RS19260 -0.6 -4.9 hypothetical protein compare
BBR_RS16540 -0.6 -2.2 XRE family transcriptional regulator compare
BBR_RS19945 -0.6 -3.2 MarR family transcriptional regulator compare
BBR_RS18745 -0.6 -0.9 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS15675 -0.6 -2.4 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS15685 -0.6 -4.0 hypothetical protein compare
BBR_RS20810 -0.6 -1.6 pirin compare
BBR_RS15915 -0.6 -0.5 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS15450 -0.6 -1.7 dihydroorotate dehydrogenase compare
BBR_RS10660 -0.6 -4.8 esterase compare
BBR_RS14615 -0.6 -3.0 histidine kinase compare
BBR_RS16985 -0.6 -1.6 transcriptional repressor LexA compare
BBR_RS17590 -0.6 -2.6 PTS sugar transporter subunit IIA compare
BBR_RS21170 -0.6 -3.2 membrane protein insertion efficiency factor YidD compare
BBR_RS15455 -0.6 -0.9 orotate phosphoribosyltransferase compare
BBR_RS20930 -0.5 -1.2 hypothetical protein compare
BBR_RS14260 -0.5 -0.8 ABC transporter ATP-binding protein compare
BBR_RS16640 -0.5 -1.6 ABC transporter permease compare
BBR_RS15360 -0.5 -1.1 hypothetical protein compare
BBR_RS14985 -0.5 -1.1 ATP-dependent DNA helicase PcrA compare
BBR_RS12855 -0.5 -2.1 glycine cleavage system protein H compare
BBR_RS15445 -0.5 -2.1 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS10755 -0.5 -2.2 adenylosuccinate synthase compare
BBR_RS14475 -0.5 -3.2 formate C-acetyltransferase compare
BBR_RS20420 -0.5 -3.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS15695 -0.5 -2.3 membrane channel protein compare
BBR_RS11515 -0.5 -4.0 ammonium transporter compare
BBR_RS19795 -0.5 -4.2 hypothetical protein compare
BBR_RS12820 -0.5 -3.7 hypothetical protein compare
BBR_RS16965 -0.5 -0.3 ATP-dependent DNA helicase compare
BBR_RS15680 -0.5 -2.7 succinate--CoA ligase subunit alpha compare
BBR_RS14280 -0.5 -1.3 dephospho-CoA kinase compare
BBR_RS12980 -0.5 -3.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS13435 -0.5 -3.0 hypothetical protein compare
BBR_RS16515 -0.5 -1.1 preprotein translocase subunit SecA compare
BBR_RS13640 -0.5 -1.6 orotidine-5'-phosphate decarboxylase compare
BBR_RS17455 -0.5 -3.2 DNA-binding response regulator compare
BBR_RS16010 -0.5 -1.2 hypothetical protein compare
BBR_RS18220 -0.5 -3.4 glycosyltransferase family 2 protein compare
BBR_RS15010 -0.5 -2.1 glutamine amidotransferase compare
BBR_RS20555 -0.4 -0.9 hypothetical protein compare
BBR_RS16505 -0.4 -2.1 hypothetical protein compare
BBR_RS16820 -0.4 -1.4 RNA polymerase sigma factor RpoE compare
BBR_RS19445 -0.4 -3.6 glutamate 5-kinase compare
BBR_RS21000 -0.4 -0.8 hypothetical protein compare
BBR_RS16140 -0.4 -2.6 long-chain fatty acid--CoA ligase compare
BBR_RS19105 -0.4 -2.4 FmdB family transcriptional regulator compare
BBR_RS10570 -0.4 -2.0 hypothetical protein compare
BBR_RS14980 -0.4 -1.8 xanthine phosphoribosyltransferase compare
BBR_RS19915 -0.4 -2.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
BBR_RS20705 -0.4 -1.0 hypothetical protein compare
BBR_RS15050 -0.4 -0.6 DUF948 domain-containing protein compare
BBR_RS15155 -0.4 -0.9 histidine triad nucleotide-binding protein compare
BBR_RS16695 -0.4 -1.7 PadR family transcriptional regulator compare
BBR_RS20440 -0.4 -1.9 NUDIX hydrolase compare
BBR_RS12905 -0.4 -0.8 galactose-1-phosphate uridylyltransferase compare
BBR_RS15180 -0.4 -2.0 long-chain fatty acid--CoA ligase compare
BBR_RS16175 -0.4 -1.3 DNA integration/recombination/inversion protein compare
BBR_RS21030 -0.4 -1.7 hypothetical protein compare
BBR_RS21100 -0.4 -0.9 hypothetical protein compare
BBR_RS12555 -0.4 -2.4 protein-tyrosine-phosphatase compare
BBR_RS12810 -0.4 -2.5 hypothetical protein compare
BBR_RS20400 -0.4 -3.6 serine/threonine protein kinase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Puromycin dihydrochloride across organisms