Experiment set3IT013 for Synechococcus elongatus PCC 7942
Gentamicin sulfate salt 0.00048828125 mg/ml
Group: stressMedia: BG11 + Gentamicin sulfate salt (0.000488281 mg/ml)
Culturing: SynE_ML6, 12 well microplate, Aerobic, at 30 (C), shaken=0 rpm
Growth: about 4.9 generations
By: Kelly on 6/20/2015
Media components: 1.5 g/L Sodium nitrate, 0.04 g/L Potassium phosphate dibasic, 0.075 g/L Magnesium Sulfate Heptahydrate, 0.036 g/L Calcium chloride dihydrate, 0.006 g/L Citric Acid, 0.006 g/L Ferric ammonium citrate, 0.001 g/L EDTA (disodium salt), 0.02 g/L Sodium carbonate, Trace metal mix A5 (0.00286 g/L Boric Acid, 0.00181 g/L Manganese (II) chloride tetrahydrate, 0.000222 g/L Zinc sulfate heptahydrate, 0.00039 g/L Sodium Molybdate Dihydrate, 7.9e-05 g/L Copper (II) sulfate pentahydrate, 0.0494 mg/L Cobalt(II) nitrate hexahydrate)
Specific Phenotypes
For 4 genes in this experiment
For stress Gentamicin sulfate salt in Synechococcus elongatus PCC 7942
For stress Gentamicin sulfate salt across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Phycobilisome | 1 |
| Polyamine Metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| spermidine biosynthesis I | 2 | 2 | 1 |
| spermine biosynthesis | 2 | 1 | 1 |
| aminopropylcadaverine biosynthesis | 3 | 2 | 1 |
| spermidine biosynthesis III | 4 | 2 | 1 |
| superpathway of polyamine biosynthesis II | 8 | 5 | 1 |
| superpathway of polyamine biosynthesis I | 8 | 4 | 1 |
| L-methionine salvage cycle III | 11 | 9 | 1 |
| L-methionine salvage cycle I (bacteria and plants) | 12 | 8 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 12 | 1 |