Experiment set3IT013 for Pantoea sp. MT58

Compare to:

Defined media, anaerobic, with FW301 groundwater

200 most important genes:

  gene name fitness t score description  
IAI47_05420 -3.9 -2.6 PTS glucose transporter subunit IIA compare
IAI47_18830 -3.3 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_04895 -3.0 -5.4 pyridoxine 5'-phosphate synthase compare
IAI47_00460 -3.0 -2.9 glutamate--ammonia ligase compare
IAI47_05070 -2.9 -1.2 outer membrane protein assembly factor BamB compare
IAI47_09240 -2.8 -3.3 HTH-type transcriptional regulator CysB compare
IAI47_12865 -2.7 -12.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_08085 -2.7 -7.4 helix-turn-helix domain-containing protein compare
IAI47_01035 -2.6 -17.6 dihydroxy-acid dehydratase compare
IAI47_16350 -2.6 -11.0 phosphoserine phosphatase compare
IAI47_17220 -2.5 -19.2 glutamate synthase large subunit compare
IAI47_13770 -2.5 -13.7 citrate synthase compare
IAI47_18015 -2.5 -14.6 homoserine O-succinyltransferase compare
IAI47_16205 -2.4 -7.8 threonine synthase compare
IAI47_03860 -2.4 -12.3 diaminopimelate decarboxylase compare
IAI47_16010 -2.4 -13.8 3-isopropylmalate dehydratase large subunit compare
IAI47_00905 -2.4 -11.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_16015 -2.4 -7.2 3-isopropylmalate dehydratase small subunit compare
IAI47_17965 -2.4 -13.6 glucose-6-phosphate isomerase compare
IAI47_01050 -2.4 -15.5 ketol-acid reductoisomerase compare
IAI47_17225 -2.3 -15.9 sulfite reductase subunit alpha compare
IAI47_03975 -2.3 -14.0 amino-acid N-acetyltransferase compare
IAI47_00915 -2.3 -13.6 argininosuccinate synthase compare
IAI47_15120 -2.3 -8.1 glutamate 5-kinase compare
IAI47_16080 -2.3 -10.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_00910 -2.3 -8.7 acetylglutamate kinase compare
IAI47_09360 -2.3 -2.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_06235 -2.3 -8.7 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_00895 -2.3 -15.2 phosphoenolpyruvate carboxylase compare
IAI47_16005 -2.2 -10.8 3-isopropylmalate dehydrogenase compare
IAI47_10520 -2.2 -5.3 pyridoxamine 5'-phosphate oxidase compare
IAI47_16830 -2.2 -12.8 ornithine carbamoyltransferase compare
IAI47_04120 -2.2 -16.0 GTP diphosphokinase compare
IAI47_01040 -2.2 -11.2 threonine ammonia-lyase, biosynthetic compare
IAI47_03725 -2.2 -8.0 phosphoglycerate dehydrogenase compare
IAI47_01030 -2.2 -12.2 branched-chain amino acid transaminase compare
IAI47_09170 -2.2 -11.9 tryptophan synthase subunit beta compare
IAI47_14945 -2.1 -4.7 pyrroline-5-carboxylate reductase compare
IAI47_16115 -2.1 -15.5 carbamoyl-phosphate synthase large subunit compare
IAI47_13695 -2.1 -0.9 colicin uptake protein TolR compare
IAI47_07065 -2.1 -12.1 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_00920 -2.1 -12.9 argininosuccinate lyase compare
IAI47_16120 -2.1 -10.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_15115 -2.1 -10.5 glutamate-5-semialdehyde dehydrogenase compare
IAI47_00890 -2.1 -11.0 methylenetetrahydrofolate reductase compare
IAI47_09580 -2.1 -3.6 FNR family transcription factor compare
IAI47_09165 -2.1 -8.8 tryptophan synthase subunit alpha compare
IAI47_13900 -2.1 -12.9 asparagine synthase B compare
IAI47_05425 -2.0 -6.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_09175 -2.0 -11.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_07060 -2.0 -9.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_00880 -2.0 -12.9 cystathionine gamma-synthase compare
IAI47_16210 -2.0 -11.7 homoserine kinase compare
IAI47_07085 -2.0 -11.9 histidinol-phosphate transaminase compare
IAI47_12885 -2.0 -10.8 pyruvate formate lyase 1-activating protein compare
IAI47_07165 -2.0 -3.1 exodeoxyribonuclease I compare
IAI47_05155 -2.0 -14.1 polyphosphate kinase 1 compare
IAI47_16215 -2.0 -13.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_18040 -2.0 -13.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_00780 -2.0 -4.7 6-phosphofructokinase compare
IAI47_17185 -2.0 -7.6 RNA polymerase factor sigma-54 compare
IAI47_16000 -1.9 -13.7 2-isopropylmalate synthase compare
IAI47_09190 -1.9 -10.5 anthranilate synthase component 1 compare
IAI47_09040 -1.9 -2.1 NAD-dependent epimerase compare
IAI47_07070 -1.9 -6.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_07090 -1.9 -9.3 histidinol dehydrogenase compare
IAI47_15635 -1.8 -2.4 RNA polymerase-binding protein DksA compare
IAI47_12215 -1.8 -10.9 dihydroorotase compare
IAI47_07080 -1.8 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_07075 -1.8 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_09055 -1.8 -12.2 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_09180 -1.8 -8.0 anthranilate phosphoribosyltransferase compare
IAI47_17560 -1.8 -1.1 ROK family transcriptional regulator compare
IAI47_13700 -1.8 -3.1 Tol-Pal system protein TolQ compare
IAI47_12880 -1.7 -12.8 formate C-acetyltransferase compare
IAI47_10840 -1.7 -5.3 pyruvate kinase PykF compare
IAI47_17035 -1.7 -3.2 ribosome maturation factor RimP compare
IAI47_15485 -1.7 -2.0 molecular chaperone Skp compare
IAI47_07095 -1.7 -7.6 ATP phosphoribosyltransferase compare
IAI47_09275 -1.7 -7.3 orotidine-5'-phosphate decarboxylase compare
IAI47_18530 -1.6 -2.9 thioredoxin TrxA compare
IAI47_16860 -1.6 -10.7 aspartate carbamoyltransferase compare
IAI47_18045 -1.6 -9.6 phosphoribosylamine--glycine ligase compare
IAI47_14350 -1.5 -5.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_00600 -1.5 -9.7 orotate phosphoribosyltransferase compare
IAI47_05275 -1.5 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_12705 -1.5 -8.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_09185 -1.5 -4.4 glutamine amidotransferase compare
IAI47_00770 -1.5 -1.3 general stress protein compare
IAI47_06275 -1.5 -11.6 amidophosphoribosyltransferase compare
IAI47_16870 -1.4 -6.9 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_04930 -1.4 -10.9 phosphoribosylformylglycinamidine synthase compare
IAI47_21880 -1.4 -1.1 ParA family protein compare
IAI47_04410 -1.4 -9.5 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_05180 -1.3 -9.2 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_14075 -1.3 -2.4 transcription antiterminator/RNA stability regulator CspE compare
IAI47_17215 -1.3 -1.3 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_00110 -1.3 -5.6 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_00465 -1.3 -2.1 ribosome-dependent GTPase TypA compare
IAI47_05520 -1.2 -1.2 tRNA-Ala compare
IAI47_03685 -1.2 -6.8 erythrose-4-phosphate dehydrogenase compare
IAI47_13685 -1.2 -2.3 Tol-Pal system protein TolB compare
IAI47_13950 -1.1 -1.6 PhoH family protein compare
IAI47_06320 -1.1 -5.9 phosphate acetyltransferase compare
IAI47_03595 -1.1 -5.1 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_00445 -1.1 -7.7 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_16390 -1.1 -1.0 tRNA-Leu compare
IAI47_16190 -1.1 -4.3 molybdopterin adenylyltransferase compare
IAI47_01020 -1.1 -8.4 acetolactate synthase 2 catalytic subunit compare
IAI47_14400 -1.1 -7.7 copper-exporting P-type ATPase CopA compare
IAI47_01365 -1.1 -1.4 inorganic phosphate transporter PitA compare
IAI47_18055 -1.1 -4.5 DNA-binding protein HU-alpha compare
IAI47_07250 -1.1 -3.6 tRNA-Asn compare
IAI47_04865 -1.1 -1.9 SoxR-reducing system protein RseC compare
IAI47_05405 -1.1 -5.2 cysteine synthase CysM compare
IAI47_08705 -1.1 -7.3 carboxy terminal-processing peptidase compare
IAI47_06400 -1.0 -2.3 NADH-quinone oxidoreductase subunit J compare
IAI47_04835 -1.0 -5.5 ATP-dependent RNA helicase SrmB compare
IAI47_09010 -1.0 -5.7 formyltetrahydrofolate deformylase compare
IAI47_06325 -1.0 -4.4 acetate kinase compare
IAI47_17020 -1.0 -2.3 30S ribosome-binding factor RbfA compare
IAI47_15540 -1.0 -5.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_16990 -1.0 -3.1 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_00875 -0.9 -1.0 met regulon transcriptional regulator MetJ compare
IAI47_04265 -0.9 -6.7 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_11830 -0.9 -4.7 muramoyltetrapeptide carboxypeptidase compare
IAI47_17120 -0.9 -1.8 BolA family iron metabolism protein IbaG compare
IAI47_12915 -0.9 -5.7 leucine-responsive transcriptional regulator Lrp compare
IAI47_00455 -0.9 -5.5 nitrogen regulation protein NR(II) compare
IAI47_00410 -0.9 -6.9 molybdenum cofactor guanylyltransferase MobA compare
IAI47_17005 -0.9 -4.6 polyribonucleotide nucleotidyltransferase compare
IAI47_03820 -0.9 -2.9 site-specific tyrosine recombinase XerD compare
IAI47_01025 -0.9 -5.1 acetolactate synthase 2 small subunit compare
IAI47_12410 -0.9 -4.5 MarR family transcriptional regulator compare
IAI47_03855 -0.9 -5.3 LysR family transcriptional regulator compare
IAI47_13140 -0.9 -5.6 molybdopterin molybdotransferase MoeA compare
IAI47_18410 -0.9 -3.3 diaminopimelate epimerase compare
IAI47_07885 -0.9 -1.1 tRNA-Asn compare
IAI47_03615 -0.9 -5.3 glutathione synthase compare
IAI47_18310 -0.8 -7.0 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_10755 -0.8 -1.7 DUF1289 domain-containing protein compare
IAI47_00515 -0.8 -1.5 DNA-directed RNA polymerase subunit omega compare
IAI47_07490 -0.8 -2.1 DNA-binding protein compare
IAI47_16085 -0.8 -1.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_18595 -0.8 -6.1 endoglucanase compare
IAI47_13475 -0.7 -2.4 molybdopterin synthase catalytic subunit MoaE compare
IAI47_04255 -0.7 -6.7 nitrate reductase subunit alpha compare
IAI47_12030 -0.7 -5.3 PTS glucose transporter subunit IIBC compare
IAI47_04270 -0.7 -4.7 respiratory nitrate reductase subunit gamma compare
IAI47_16925 -0.7 -6.2 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_13145 -0.7 -4.2 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_19675 -0.7 -2.5 ParD-like family protein compare
IAI47_05440 -0.7 -4.3 cysteine synthase A compare
IAI47_02090 -0.7 -2.0 elongation factor Tu compare
IAI47_11625 -0.7 -1.4 DUF1311 domain-containing protein compare
IAI47_04260 -0.7 -5.7 nitrate reductase subunit beta compare
IAI47_09305 -0.7 -1.7 cyclic di-GMP phosphodiesterase compare
IAI47_12945 -0.7 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_04870 -0.7 -3.3 elongation factor 4 compare
IAI47_16930 -0.7 -3.4 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_13925 -0.7 -1.1 tRNA-Met compare
IAI47_08810 -0.7 -3.1 hypothetical protein compare
IAI47_06980 -0.7 -1.3 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_02650 -0.7 -4.3 esterase compare
IAI47_19035 -0.7 -1.5 transcriptional regulator compare
IAI47_04350 -0.6 -5.2 glutamate--cysteine ligase compare
IAI47_13840 -0.6 -1.9 replication initiation negative regulator SeqA compare
IAI47_13885 -0.6 -1.3 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_18315 -0.6 -3.2 HTH-type transcriptional regulator MetR compare
IAI47_21310 -0.6 -4.4 helix-turn-helix domain-containing protein compare
IAI47_07790 -0.6 -1.8 ribose 1,5-bisphosphokinase compare
IAI47_11415 -0.6 -1.0 hypothetical protein compare
IAI47_04400 -0.6 -3.0 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_15110 -0.6 -2.3 chromophore lyase compare
IAI47_08135 -0.6 -4.3 flagellar export chaperone FliS compare
IAI47_01975 -0.6 -4.5 phosphoribulokinase compare
IAI47_15985 -0.6 -3.3 acetolactate synthase small subunit compare
IAI47_17000 -0.6 -4.1 lipoprotein NlpI compare
IAI47_03375 -0.6 -3.6 peptide chain release factor 3 compare
IAI47_12925 -0.6 -1.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_15970 -0.6 -1.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_06355 -0.6 -3.7 transcriptional regulator LrhA compare
IAI47_13495 -0.6 -2.6 GTP 3',8-cyclase MoaA compare
IAI47_05370 -0.6 -2.9 GNAT family acetyltransferase compare
IAI47_16995 -0.6 -1.0 protein YrbN compare
IAI47_21450 -0.6 -1.2 general stress protein compare
IAI47_18675 -0.5 -2.6 MarR family transcriptional regulator compare
IAI47_12875 -0.5 -3.4 formate transporter FocA compare
IAI47_02720 -0.5 -4.6 translocation/assembly module TamB compare
IAI47_15340 -0.5 -3.4 hydroxyacylglutathione hydrolase compare
IAI47_00900 -0.5 -4.2 acetylornithine deacetylase compare
IAI47_07175 -0.5 -4.1 FUSC family protein compare
IAI47_15990 -0.5 -4.8 acetolactate synthase 3 large subunit compare
IAI47_11375 -0.5 -0.6 hypothetical protein compare
IAI47_05320 -0.5 -4.4 nitrate/nitrite two-component system sensor histidine kinase NarQ compare
IAI47_16815 -0.5 -2.9 GNAT family N-acetyltransferase compare
IAI47_12470 -0.5 -4.6 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_10890 -0.5 -4.6 FAD-binding oxidoreductase compare
IAI47_00450 -0.5 -4.1 nitrogen regulation protein NR(I) compare
IAI47_00485 -0.5 -4.0 fatty acid biosynthesis protein FabY compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress FW301_groundwater across organisms