Experiment set3IT013 for Caulobacter crescentus NA1000

Compare to:

PYE with Gentamicin sulfate salt 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02030 +7.0 9.2 hypothetical protein compare
CCNA_02448 +6.6 22.6 hypothetical protein compare
CCNA_01059 +6.5 22.7 S-layer protein rsaA compare
CCNA_02028 +6.3 26.0 NTF2 superfamily protein compare
CCNA_00011 +6.2 13.6 chaperone protein DnaJ compare
CCNA_02026 +5.9 11.1 hypothetical protein compare
CCNA_02447 +5.6 20.2 PspA/IM30 family regulatory protein compare
CCNA_03281 +5.2 34.6 AsnC-family transcriptional regulator compare
CCNA_03043 +5.1 13.5 type IV pilin protein pilA compare
CCNA_00699 +4.7 36.0 LSU ribosomal protein L28P compare
CCNA_02941 +4.7 14.4 transcription elongation factor greA compare
CCNA_03824 +4.5 30.5 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_01712 +4.5 27.7 CopY/TcrY family transcriptional repressor compare
CCNA_03805 +4.5 18.3 PadR-family transcriptional regulator compare
CCNA_01058 +4.3 26.2 helix-turn-helix transcriptional regulator compare
CCNA_00389 +4.2 7.4 aminomethyltransferase family protein compare
CCNA_00296 +4.2 24.8 phosphate regulon response regulator PhoB compare
CCNA_02000 +4.1 8.6 SSU ribosomal protein S2P compare
CCNA_00962 +4.1 16.5 MarR-family transcriptional regulator compare
CCNA_03064 +4.1 23.7 PadR-family transcriptional regulator compare
CCNA_02957 +4.0 15.9 ArsR-family transcriptional regulator compare
CCNA_02328 +3.9 2.8 cell cycle regulatory protein GcrA compare
CCNA_00161 +3.9 25.2 hypothetical protein compare
CCNA_01851 +3.9 25.5 quinol cytochrome oxidase polypeptide II compare
CCNA_02387 +3.9 28.1 glutathione reductase compare
CCNA_03252 +3.9 23.1 CopY/TcrY-family transcriptional regulator compare
CCNA_03858 +3.8 20.7 protein translocase subunit secB compare
CCNA_01525 +3.8 19.4 flagellar biosynthesis repressor flbT compare
CCNA_02103 +3.7 21.8 hypothetical protein compare
CCNA_01815 +3.7 25.4 nitrogen assimilation regulatory protein NtrC compare
CCNA_02025 +3.7 17.1 hypothetical protein compare
CCNA_01964 +3.6 15.2 NADH dehydrogenase compare
CCNA_01242 +3.6 19.9 amino acid permease compare
CCNA_02021 +3.6 9.6 hypothetical protein compare
CCNA_00756 +3.5 5.3 hypothetical protein compare
CCNA_00924 +3.5 18.3 MarR/EmrR family transcriptional regulator compare
CCNA_02066 +3.4 16.1 phytoene/squalene synthase family protein compare
CCNA_02316 +3.3 10.1 hypothetical protein compare
CCNA_02315 +3.3 16.8 Cro/CI-family transcriptional regulator compare
CCNA_00846 +3.3 26.9 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_03030 +3.3 14.0 cytochrome c2 compare
CCNA_01061 +3.3 13.3 type I secretion adaptor protein RsaE compare
CCNA_02037 +3.3 21.5 ATP-dependent endopeptidase Lon compare
CCNA_00264 +3.3 16.9 C4-dicarboxylate transport protein compare
CCNA_00930 +3.2 23.4 riboflavin synthase alpha chain compare
CCNA_01361 +3.2 8.4 PepSY superfamily protein compare
CCNA_03287 +3.2 24.6 PadR-family transcriptional regulator compare
CCNA_00518 +3.2 18.2 LSU ribosomal protein L25P compare
CCNA_01060 +3.2 14.6 type I protein secretion ATP-binding protein RsaD compare
CCNA_03519 +3.2 8.6 PadR-family transcriptional regulator compare
CCNA_03961 +3.2 17.8 hypothetical protein compare
CCNA_03420 +3.2 10.6 hypothetical protein compare
CCNA_01979 +3.2 8.6 LexA repressor compare
CCNA_03289 +3.1 24.3 HicB-family RNA-binding protein compare
CCNA_R0037 +3.1 11.9 tRNA-Glu compare
CCNA_03612 +3.0 18.7 HTH XRE-family transcriptional regulator compare
CCNA_01181 +3.0 16.7 hypothetical protein compare
CCNA_00505 +3.0 15.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01526 +3.0 13.1 flagellar biosynthesis regulatory protein flaF compare
CCNA_03479 +2.9 18.6 MarR-family transcriptional regulator compare
CCNA_R0048 +2.9 4.5 tRNA-Leu compare
CCNA_01237 +2.8 1.9 hypothetical protein compare
CCNA_01094 +2.8 7.6 hypothetical protein compare
CCNA_01063 +2.8 12.2 UDP-perosamine 4-acetyl transferase compare
CCNA_03072 +2.8 11.5 TetR-family transcriptional regulator compare
CCNA_02575 +2.8 7.9 hypothetical protein compare
CCNA_03689 +2.8 19.1 alanine dehydrogenase compare
CCNA_00459 +2.8 13.9 Na+/H+ antiporter nhaA compare
CCNA_03863 +2.8 7.5 hypothetical protein compare
CCNA_02416 +2.8 13.8 DNA-binding protein HU compare
CCNA_02419 +2.7 10.7 TonB1 protein compare
CCNA_02075 +2.7 3.6 peptidoglycan binding endopeptidase DipM compare
CCNA_00521 +2.7 5.7 antitoxin protein compare
CCNA_02242 +2.7 14.3 PHB granule-associated protein, phasin2 compare
CCNA_02619 +2.6 16.5 stomatin/prohibitin-related protein compare
CCNA_01814 +2.6 19.0 nitrogen regulation protein ntrB compare
CCNA_01573 +2.6 12.8 ArsR-family transcriptional regulator compare
CCNA_03808 +2.6 16.2 organic solvent resistance transport system Ttg2C protein compare
CCNA_02576 +2.6 18.5 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01453 +2.6 8.2 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_03012 +2.6 16.4 peroxiredoxin compare
CCNA_00684 +2.6 13.2 anti-sigma factor, ChrR-family compare
CCNA_00162 +2.6 11.1 hypothetical protein compare
CCNA_02339 +2.6 16.2 methyltransferase compare
CCNA_02732 +2.6 4.6 hypothetical protein compare
CCNA_02324 +2.5 13.2 heat shock protein 33 hsp33 compare
CCNA_02980 +2.5 17.9 tryptophan 2,3-dioxygenase compare
CCNA_03280 +2.5 22.1 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01942 +2.5 13.2 Rrf2 family protein compare
CCNA_02180 +2.5 6.5 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_03129 +2.5 15.2 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02225 +2.5 12.7 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01780 +2.5 15.3 exopolyphosphatase compare
CCNA_03062 +2.5 16.0 cell wall hydrolase family protein compare
CCNA_01583 +2.5 6.2 phosphate-binding protein compare
CCNA_01751 +2.5 9.0 aminodeoxychorismate lyase compare
CCNA_02591 +2.5 10.2 glutaredoxin compare
CCNA_02910 +2.5 20.6 TonB-dependent receptor compare
CCNA_03989 +2.4 19.6 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03271 +2.4 18.3 methionine gamma-lyase compare
CCNA_01840 +2.4 18.9 MerR-family transcriptional regulator compare
CCNA_00939 +2.4 10.0 MarR-family transcriptional regulator compare
CCNA_02151 +2.4 6.4 exodeoxyribonuclease VII small subunit compare
CCNA_00354 +2.3 13.9 NlpC/P60 CHAP domain amidase protein compare
CCNA_03325 +2.3 8.4 hypothetical protein compare
CCNA_02073 +2.3 9.3 cupin domain transcriptional regulator compare
CCNA_03807 +2.3 12.8 organic solvent resistance transport system Ttg2D protein compare
CCNA_03498 +2.3 13.9 MarR-family transcriptional regulator compare
CCNA_02553 +2.3 16.1 ATP-dependent clp protease ATP-binding subunit ClpA compare
CCNA_01684 +2.3 13.5 phenylalanine-4-hydroxylase compare
CCNA_02552 +2.3 5.9 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_02081 +2.3 10.2 Sec-independent protein translocase protein tatB compare
CCNA_01186 +2.2 10.8 hypothetical protein compare
CCNA_01739 +2.2 13.7 LSU ribosomal protein L9P compare
CCNA_01622 +2.2 7.7 Rsh ppGpp hydrolase-synthetase compare
CCNA_01730 +2.2 13.7 amidophosphoribosyltransferase compare
CCNA_01913 +2.2 14.4 MarR-family transcriptional regulator compare
CCNA_01931 +2.2 15.0 TetR-family transcriptional regulator compare
CCNA_00497 +2.2 14.5 putative rhamnosyl transferase compare
CCNA_01553 +2.2 8.3 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_01968 +2.2 10.1 pentapeptide repeats containing protein compare
CCNA_02616 +2.2 15.4 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_00527 +2.2 14.6 hypothetical protein compare
CCNA_01801 +2.2 10.7 hypothetical protein compare
CCNA_00149 +2.2 6.7 Cro/CI-family transcriptional regulator compare
CCNA_03951 +2.2 10.3 hypothetical protein compare
CCNA_03108 +2.2 17.4 TonB-dependent outer membrane receptor compare
CCNA_03464 +2.2 6.9 glycine cleavage system H protein compare
CCNA_03806 +2.1 13.6 outer membrane lipoprotein compare
CCNA_02243 +2.1 14.4 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_03375 +2.1 6.6 RNA polymerase sigma-J factor compare
CCNA_01763 +2.1 13.4 multifunctional aminopeptidase compare
CCNA_03123 +2.1 9.5 ArsR-family transcriptional regulator compare
CCNA_02546 +2.1 15.6 GGDEF/response regulator protein PleD compare
CCNA_00447 +2.1 11.6 chemotaxis protein cheD compare
CCNA_03078 +2.1 1.1 Arc/MetJ-family transcriptional regulator compare
CCNA_02341 +2.1 8.4 small heat shock protein compare
CCNA_00781 +2.1 14.8 two-component receiver protein CpdR compare
CCNA_01850 +2.1 12.5 quinol cytochrome oxidase polypeptide I compare
CCNA_02617 +2.1 17.4 histidinol-phosphate aminotransferase compare
CCNA_00013 +2.1 17.3 protein-PII uridylyltransferase compare
CCNA_00945 +2.1 12.4 chemotaxis protein MotD compare
CCNA_01848 +2.1 12.2 quinol cytochrome oxidase polypeptide IV compare
CCNA_02133 +2.1 7.2 glucokinase compare
CCNA_02836 +2.0 9.3 hypothetical protein compare
CCNA_03379 +2.0 4.8 Cro/CI family transcriptional regulator compare
CCNA_01624 +2.0 5.3 orotate phosphoribosyltransferase compare
CCNA_01722 +2.0 4.1 hypothetical protein compare
CCNA_00834 +2.0 8.6 flagellin FljM compare
CCNA_00932 +2.0 10.9 6,7-dimethyl-8-ribityllumazine synthase compare
CCNA_01593 +2.0 12.6 Xaa-pro aminopeptidase compare
CCNA_03401 +2.0 10.0 conserved hypothetical cytosolic protein compare
CCNA_00726 +2.0 14.4 acyl-CoA dehydrogenase compare
CCNA_00944 +2.0 11.6 flagellar hook length determination protein compare
CCNA_03089 +2.0 12.9 hypothetical protein compare
CCNA_02125 +2.0 15.1 polar development protein podJ compare
CCNA_02663 +2.0 4.1 DnaK suppressor protein DksA compare
CCNA_02171 +2.0 14.1 nucleoside permease nupC compare
CCNA_00947 +1.9 15.3 flagellar hook protein FlgE compare
CCNA_01393 +1.9 13.4 soluble lytic murein transglycosylase compare
CCNA_02526 +1.9 14.1 dihydroorotase compare
CCNA_00032 +1.9 7.7 antitoxin protein VapB compare
CCNA_00998 +1.9 9.9 ROS/MUCR transcriptional regulator compare
CCNA_03810 +1.9 12.4 organic solvent resistance transport system ATP-binding protein compare
CCNA_00215 +1.9 11.5 SapC surface layer protein compare
CCNA_03214 +1.9 9.6 hypothetical protein compare
CCNA_02567 +1.9 13.1 sensory transduction histidine kinase pleC compare
CCNA_03832 +1.9 8.8 TetR-family transcriptional regulator compare
CCNA_03936 +1.9 6.5 hypothetical protein compare
CCNA_00769 +1.9 10.4 TetR family transcriptional regulator compare
CCNA_02646 +1.9 4.3 cell division protein MraZ compare
CCNA_02004 +1.9 4.5 SOS-induced inhibitor of cell division SidA compare
CCNA_01220 +1.9 7.8 7-keto-8-aminopelargonate synthetase compare
CCNA_00895 +1.9 11.8 hypothetical protein compare
CCNA_01775 +1.9 8.9 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_03524 +1.9 9.8 di-/tripeptide transporter compare
CCNA_03959 +1.9 2.5 hypothetical protein compare
CCNA_01802 +1.9 5.1 hypothetical protein compare
CCNA_01528 +1.9 11.1 flagellin fljK compare
CCNA_01954 +1.9 3.5 ribonuclease E compare
CCNA_R0054 +1.9 4.5 tRNA-Gly compare
CCNA_01008 +1.9 14.5 urocanate hydratase compare
CCNA_00852 +1.9 8.8 TetR family transcriptional regulator compare
CCNA_01603 +1.9 11.2 aspartate aminotransferase compare
CCNA_01505 +1.8 4.7 hypothetical protein compare
CCNA_00441 +1.8 10.6 chemotaxis receiver domain protein cheYI compare
CCNA_02467 +1.8 12.1 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_R0075 +1.8 2.9 tRNA-Met compare
CCNA_01826 +1.8 11.8 vitamin B12 receptor compare
CCNA_00485 +1.8 11.4 ribosomal large subunit pseudouridine synthase D compare
CCNA_00072 +1.8 11.6 hypothetical protein compare
CCNA_02942 +1.8 4.8 nucleoside-diphosphate-sugar epimerase compare
CCNA_03215 +1.8 12.5 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_02330 +1.8 8.3 hypothetical protein compare
CCNA_01774 +1.8 3.7 phosphoribosylglycinamide formyltransferase compare
CCNA_01420 +1.8 6.6 NrdR family transcriptional regulator compare
CCNA_00446 +1.8 7.4 chemotaxis receiver domain protein cheYII compare
CCNA_01804 +1.8 11.8 glutathione peroxidase compare
CCNA_00400 +1.8 9.8 MarR/EmrR-family transcriptional regulator compare
CCNA_02063 +1.8 8.0 beta-barrel assembly machine (BAM) protein BamD compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Gentamicin sulfate salt across organisms