Experiment set3IT013 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 4; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -5.9 -4.1 NUDIX domain-containing protein compare
ABZR87_RS08630 -4.7 -5.6 dihydroorotase compare
ABZR87_RS14115 -4.6 -4.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS13400 -4.4 -2.0 hypothetical protein compare
ABZR87_RS13645 -4.0 -1.8 hypothetical protein compare
ABZR87_RS02160 -3.6 -5.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS05305 -3.4 -9.7 TetR family transcriptional regulator compare
ABZR87_RS02590 -3.2 -8.3 3-dehydroquinate synthase compare
ABZR87_RS07510 -3.2 -3.1 LysR family transcriptional regulator compare
ABZR87_RS08695 -3.2 -16.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS22920 -3.2 -5.3 phosphogluconate dehydratase compare
ABZR87_RS04975 -3.2 -2.2 peptide deformylase compare
ABZR87_RS02155 -3.1 -7.3 anthranilate phosphoribosyltransferase compare
ABZR87_RS02640 -3.1 -12.6 diaminopimelate decarboxylase compare
ABZR87_RS05100 -3.1 -4.7 RNA polymerase-binding protein DksA compare
ABZR87_RS02595 -3.0 -9.5 shikimate kinase compare
ABZR87_RS08640 -2.9 -5.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS09465 -2.9 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS12970 -2.8 -4.2 putative holin compare
ABZR87_RS07605 -2.7 -3.0 D-aminoacyl-tRNA deacylase compare
ABZR87_RS08990 -2.7 -6.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS06715 -2.7 -4.8 PTS sugar transporter subunit IIA compare
ABZR87_RS13790 -2.7 -8.2 chorismate synthase compare
ABZR87_RS01255 -2.6 -11.2 LysR substrate-binding domain-containing protein compare
ABZR87_RS09895 -2.6 -1.8 DUF1841 family protein compare
ABZR87_RS02145 -2.6 -2.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS16270 -2.6 -1.6 cold-shock protein compare
ABZR87_RS08970 -2.6 -6.6 protein TolQ compare
ABZR87_RS01810 -2.5 -3.5 glutamate 5-kinase compare
ABZR87_RS01225 -2.5 -3.3 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS16960 -2.4 -1.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS12785 -2.4 -2.4 endopeptidase La compare
ABZR87_RS15715 -2.4 -6.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS01285 -2.4 -1.6 preprotein translocase subunit YajC compare
ABZR87_RS10980 -2.4 -1.5 tRNA-Leu compare
ABZR87_RS06400 -2.3 -7.3 response regulator transcription factor compare
ABZR87_RS16080 -2.3 -1.6 P-II family nitrogen regulator compare
ABZR87_RS07360 -2.3 -8.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS08980 -2.3 -3.8 cell envelope integrity protein TolA compare
ABZR87_RS14500 -2.3 -10.4 tryptophan synthase subunit beta compare
ABZR87_RS11245 -2.3 -4.4 translational GTPase TypA compare
ABZR87_RS22970 -2.3 -9.9 cystathionine gamma-synthase family protein compare
ABZR87_RS11125 -2.3 -5.3 cell division protein ZapE compare
ABZR87_RS07380 -2.2 -11.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS06705 -2.2 -11.0 glutamate--cysteine ligase compare
ABZR87_RS00435 -2.2 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS07355 -2.2 -5.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS11760 -2.2 -1.4 membrane protein compare
ABZR87_RS10620 -2.2 -3.3 serine O-acetyltransferase compare
ABZR87_RS00360 -2.1 -2.1 acyl-CoA desaturase compare
ABZR87_RS14965 -2.1 -3.2 DUF3619 family protein compare
ABZR87_RS08795 -2.1 -3.2 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS05645 -2.1 -3.7 SDR family oxidoreductase compare
ABZR87_RS13250 -2.1 -2.4 phosphoserine phosphatase SerB compare
ABZR87_RS14535 -2.1 -4.2 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14530 -2.1 -5.5 3-isopropylmalate dehydrogenase compare
ABZR87_RS21950 -2.1 -6.3 hypothetical protein compare
ABZR87_RS13475 -2.0 -5.5 PAS domain S-box protein compare
ABZR87_RS02385 -2.0 -3.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS02140 -2.0 -10.7 anthranilate synthase component I compare
ABZR87_RS09445 -2.0 -8.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02570 -2.0 -13.7 glutamate synthase-related protein compare
ABZR87_RS03780 -2.0 -2.1 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS14540 -2.0 -4.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14505 -2.0 -4.7 phosphoribosylanthranilate isomerase compare
ABZR87_RS12960 -2.0 -1.5 head completion/stabilization protein compare
ABZR87_RS05965 -1.9 -2.3 hemerythrin domain-containing protein compare
ABZR87_RS08985 -1.9 -8.6 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS02550 -1.9 -3.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS09450 -1.9 -6.4 prephenate dehydratase compare
ABZR87_RS06845 -1.9 -7.9 heme o synthase compare
ABZR87_RS05200 -1.9 -11.4 homoserine O-acetyltransferase compare
ABZR87_RS02380 -1.9 -8.0 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS03420 -1.9 -1.2 type II secretion system minor pseudopilin GspI compare
ABZR87_RS16185 -1.9 -1.8 dCTP deaminase compare
ABZR87_RS14490 -1.9 -6.9 tryptophan synthase subunit alpha compare
ABZR87_RS04995 -1.8 -1.8 DNA topoisomerase III compare
ABZR87_RS13705 -1.8 -1.5 integration host factor subunit alpha compare
ABZR87_RS02555 -1.8 -3.9 ABC transporter ATP-binding protein compare
ABZR87_RS02655 -1.8 -6.3 anti-sigma factor compare
ABZR87_RS09515 -1.8 -1.8 cysteine synthase CysM compare
ABZR87_RS10195 -1.8 -2.1 signal peptidase I compare
ABZR87_RS13285 -1.8 -10.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS17310 -1.8 -4.6 PadR family transcriptional regulator compare
ABZR87_RS07035 -1.8 -4.8 RNase adapter RapZ compare
ABZR87_RS01110 -1.8 -6.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS01615 -1.7 -1.0 RNB domain-containing ribonuclease compare
ABZR87_RS12795 -1.7 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS02545 -1.7 -4.7 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS01765 -1.7 -3.6 cytochrome c biogenesis protein CcsA compare
ABZR87_RS14190 -1.7 -6.7 DUF2589 domain-containing protein compare
ABZR87_RS00340 -1.7 -1.3 50S ribosomal protein L33 compare
ABZR87_RS11330 -1.7 -1.6 transcriptional repressor LexA compare
ABZR87_RS07050 -1.7 -1.6 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS12790 -1.7 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS08505 -1.7 -2.2 CpaE family protein compare
ABZR87_RS20500 -1.6 -1.3 hypothetical protein compare
ABZR87_RS02375 -1.6 -6.8 cytochrome c1 compare
ABZR87_RS08205 -1.6 -1.5 hypothetical protein compare
ABZR87_RS01885 -1.6 -2.2 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS03850 -1.6 -4.5 ureidoglycolate lyase compare
ABZR87_RS16125 -1.6 -4.3 heme biosynthesis protein HemY compare
ABZR87_RS08965 -1.6 -2.2 tol-pal system-associated acyl-CoA thioesterase compare
ABZR87_RS16170 -1.6 -2.1 argininosuccinate lyase compare
ABZR87_RS13300 -1.5 -4.1 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS10190 -1.5 -4.5 translation elongation factor 4 compare
ABZR87_RS02565 -1.5 -2.6 glutamate synthase subunit beta compare
ABZR87_RS20880 -1.5 -6.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS06350 -1.5 -6.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS15505 -1.5 -1.2 DNA polymerase III subunit alpha compare
ABZR87_RS13445 -1.5 -4.9 phasin family protein compare
ABZR87_RS12950 -1.5 -4.0 phage major capsid protein, P2 family compare
ABZR87_RS00795 -1.5 -2.0 site-specific tyrosine recombinase XerD compare
ABZR87_RS18695 -1.5 -4.7 sugar-binding transcriptional regulator compare
ABZR87_RS12955 -1.5 -3.2 terminase endonuclease subunit compare
ABZR87_RS15605 -1.4 -1.4 hypothetical protein compare
ABZR87_RS11195 -1.4 -4.6 pseudouridine synthase compare
ABZR87_RS03410 -1.4 -5.5 type II secretion system major pseudopilin GspG compare
ABZR87_RS05205 -1.4 -4.0 methionine biosynthesis protein MetW compare
ABZR87_RS11435 -1.4 -1.7 Mth938-like domain-containing protein compare
ABZR87_RS04785 -1.4 -5.7 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS06710 -1.4 -9.6 glutathione synthase compare
ABZR87_RS01245 -1.4 -1.0 Dps family protein compare
ABZR87_RS01420 -1.4 -1.9 outer membrane protein assembly factor BamE compare
ABZR87_RS01645 -1.4 -3.7 type II 3-dehydroquinate dehydratase compare
ABZR87_RS05570 -1.4 -4.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS20875 -1.4 -4.5 LysR family transcriptional regulator compare
ABZR87_RS07470 -1.4 -3.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS22690 -1.4 -1.6 XRE family transcriptional regulator compare
ABZR87_RS09935 -1.4 -1.3 amino acid aminotransferase compare
ABZR87_RS04880 -1.4 -5.6 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS19305 -1.3 -1.4 SctK family type III secretion system sorting platform protein compare
ABZR87_RS07730 -1.3 -0.9 lysophospholipid acyltransferase family protein compare
ABZR87_RS08645 -1.3 -0.9 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS04865 -1.3 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS09615 -1.3 -0.9 50S ribosomal protein L19 compare
ABZR87_RS16225 -1.3 -2.3 twin-arginine translocation signal domain-containing protein compare
ABZR87_RS02220 -1.3 -5.6 redox-regulated ATPase YchF compare
ABZR87_RS15405 -1.3 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS00325 -1.3 -2.0 peptidylprolyl isomerase compare
ABZR87_RS00185 -1.3 -2.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS07055 -1.3 -5.0 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS07485 -1.3 -2.4 acetyl-CoA C-acyltransferase compare
ABZR87_RS17145 -1.2 -7.4 AMP nucleosidase compare
ABZR87_RS17695 -1.2 -2.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS02535 -1.2 -2.9 phospholipid-binding protein MlaC compare
ABZR87_RS08700 -1.2 -4.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS21245 -1.2 -1.1 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS04940 -1.2 -3.7 PAS domain-containing sensor histidine kinase compare
ABZR87_RS08585 -1.2 -2.2 chemotaxis protein CheW compare
ABZR87_RS02540 -1.2 -3.5 VacJ family lipoprotein compare
ABZR87_RS08625 -1.2 -0.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS03455 -1.2 -6.3 type II secretion system ATPase GspE compare
ABZR87_RS09710 -1.2 -1.8 tRNA-Arg compare
ABZR87_RS00865 -1.2 -1.3 VTT domain-containing protein compare
ABZR87_RS14080 -1.2 -2.6 phosphate signaling complex protein PhoU compare
ABZR87_RS14375 -1.2 -2.0 fumarate hydratase compare
ABZR87_RS15705 -1.2 -2.0 UvrD-helicase domain-containing protein compare
ABZR87_RS21285 -1.2 -2.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03425 -1.2 -4.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS04105 -1.2 -2.8 ATP synthase subunit I compare
ABZR87_RS03435 -1.2 -5.0 type II secretion system protein GspL compare
ABZR87_RS14605 -1.2 -7.5 aconitate hydratase AcnA compare
ABZR87_RS01035 -1.2 -2.8 histidine utilization repressor compare
ABZR87_RS22165 -1.2 -2.5 flagellar export chaperone FliS compare
ABZR87_RS05060 -1.2 -2.8 DUF484 family protein compare
ABZR87_RS12660 -1.2 -2.5 ABC transporter permease compare
ABZR87_RS02440 -1.2 -4.8 twin-arginine translocase subunit TatC compare
ABZR87_RS09000 -1.2 -4.5 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS01450 -1.2 -1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS06385 -1.1 -5.4 CHASE3 domain-containing protein compare
ABZR87_RS16055 -1.1 -3.4 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS16250 -1.1 -2.3 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS03430 -1.1 -7.0 type II secretion system minor pseudopilin GspK compare
ABZR87_RS20160 -1.1 -1.9 OmpA family protein compare
ABZR87_RS23360 -1.1 -2.0 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS00220 -1.1 -5.0 CysB family HTH-type transcriptional regulator compare
ABZR87_RS20665 -1.1 -2.1 IclR family transcriptional regulator compare
ABZR87_RS11170 -1.1 -0.7 FixH family protein compare
ABZR87_RS01685 -1.1 -2.6 histone H1-like DNA-binding protein compare
ABZR87_RS15225 -1.1 -3.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS14360 -1.1 -5.2 acetate--CoA ligase compare
ABZR87_RS13290 -1.1 -2.5 3-ketoacyl-ACP reductase compare
ABZR87_RS09820 -1.1 -1.5 RidA family protein compare
ABZR87_RS22910 -1.1 -1.8 6-phosphogluconolactonase compare
ABZR87_RS06840 -1.1 -3.7 COX15/CtaA family protein compare
ABZR87_RS10900 -1.1 -3.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS09975 -1.1 -2.6 Fe-S cluster assembly transcriptional regulator IscR compare
ABZR87_RS09625 -1.1 -4.9 CobD/CbiB family protein compare
ABZR87_RS01605 -1.1 -5.1 shikimate dehydrogenase compare
ABZR87_RS07005 -1.1 -1.4 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS13315 -1.1 -5.3 RluA family pseudouridine synthase compare
ABZR87_RS11815 -1.1 -5.1 [protein-PII] uridylyltransferase compare
ABZR87_RS12945 -1.1 -2.5 GPO family capsid scaffolding protein compare
ABZR87_RS16730 -1.1 -2.2 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS05140 -1.1 -2.2 ATP-binding protein compare
ABZR87_RS07765 -1.0 -3.3 hypothetical protein compare
ABZR87_RS03865 -1.0 -5.6 GntR family transcriptional regulator compare
ABZR87_RS04265 -1.0 -4.7 phenylalanine 4-monooxygenase compare
ABZR87_RS15380 -1.0 -1.4 SDR family oxidoreductase compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in rhizosphere experiments