Experiment set3IT012 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 3; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS00685 -4.9 -3.4 hypothetical protein compare
ABZR87_RS21795 -4.7 -3.2 NUDIX domain-containing protein compare
ABZR87_RS00865 -4.3 -1.7 VTT domain-containing protein compare
ABZR87_RS20495 -4.2 -1.6 hypothetical protein compare
ABZR87_RS05145 -4.2 -1.6 copper chaperone PCu(A)C compare
ABZR87_RS08630 -3.9 -2.7 dihydroorotase compare
ABZR87_RS14115 -3.9 -3.8 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS13400 -3.7 -1.4 hypothetical protein compare
ABZR87_RS20785 -3.6 -1.4 DUF2783 domain-containing protein compare
ABZR87_RS18140 -3.6 -2.5 type III secretion system export apparatus subunit SctR compare
ABZR87_RS21245 -3.6 -1.4 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS08695 -3.5 -11.6 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS22690 -3.5 -2.4 XRE family transcriptional regulator compare
ABZR87_RS01810 -3.5 -2.4 glutamate 5-kinase compare
ABZR87_RS20500 -3.5 -1.3 hypothetical protein compare
ABZR87_RS15505 -3.4 -1.3 DNA polymerase III subunit alpha compare
ABZR87_RS11140 -3.3 -2.2 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR87_RS06030 -3.3 -1.3 AraC family transcriptional regulator compare
ABZR87_RS02640 -3.2 -9.1 diaminopimelate decarboxylase compare
ABZR87_RS13050 -3.2 -1.2 GpE family phage tail protein compare
ABZR87_RS02590 -3.1 -3.7 3-dehydroquinate synthase compare
ABZR87_RS14505 -3.0 -4.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS08990 -2.9 -2.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS15380 -2.9 -1.6 SDR family oxidoreductase compare
ABZR87_RS22585 -2.9 -1.5 methyl-accepting chemotaxis protein compare
ABZR87_RS02595 -2.8 -7.7 shikimate kinase compare
ABZR87_RS16845 -2.7 -1.0 hypothetical protein compare
ABZR87_RS20665 -2.7 -2.6 IclR family transcriptional regulator compare
ABZR87_RS05305 -2.7 -6.7 TetR family transcriptional regulator compare
ABZR87_RS14540 -2.6 -4.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS09465 -2.5 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS10170 -2.5 -3.0 RseA family anti-sigma factor compare
ABZR87_RS01645 -2.5 -3.1 type II 3-dehydroquinate dehydratase compare
ABZR87_RS21950 -2.4 -5.6 hypothetical protein compare
ABZR87_RS02655 -2.4 -6.0 anti-sigma factor compare
ABZR87_RS06350 -2.4 -6.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS02075 -2.4 -1.5 23S ribosomal RNA compare
ABZR87_RS10550 -2.3 -1.5 outer membrane protein assembly factor BamC compare
ABZR87_RS14190 -2.3 -6.9 DUF2589 domain-containing protein compare
ABZR87_RS13445 -2.3 -2.9 phasin family protein compare
ABZR87_RS22035 -2.3 -3.7 hypothetical protein compare
ABZR87_RS05200 -2.3 -10.5 homoserine O-acetyltransferase compare
ABZR87_RS22910 -2.2 -2.0 6-phosphogluconolactonase compare
ABZR87_RS14490 -2.2 -4.8 tryptophan synthase subunit alpha compare
ABZR87_RS11170 -2.2 -0.9 FixH family protein compare
ABZR87_RS21365 -2.2 -1.2 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS17340 -2.2 -1.8 MarR family transcriptional regulator compare
ABZR87_RS05100 -2.2 -2.6 RNA polymerase-binding protein DksA compare
ABZR87_RS20875 -2.2 -4.4 LysR family transcriptional regulator compare
ABZR87_RS15240 -2.2 -1.5 YicC/YloC family endoribonuclease compare
ABZR87_RS16795 -2.2 -2.4 VOC family protein compare
ABZR87_RS00205 -2.1 -2.3 DUF934 domain-containing protein compare
ABZR87_RS10395 -2.1 -4.5 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS10195 -2.1 -1.5 signal peptidase I compare
ABZR87_RS15715 -2.1 -4.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS11010 -2.1 -1.5 oxidative damage protection protein compare
ABZR87_RS11990 -2.1 -2.0 hypothetical protein compare
ABZR87_RS02375 -2.1 -4.4 cytochrome c1 compare
ABZR87_RS12750 -2.1 -2.0 ABC transporter ATP-binding protein compare
ABZR87_RS22405 -2.1 -1.1 hypothetical protein compare
ABZR87_RS06845 -2.1 -5.5 heme o synthase compare
ABZR87_RS21955 -2.1 -5.4 hypothetical protein compare
ABZR87_RS18975 -2.1 -1.8 entericidin A/B family lipoprotein compare
ABZR87_RS22920 -2.1 -3.4 phosphogluconate dehydratase compare
ABZR87_RS21220 -2.1 -2.8 class I SAM-dependent methyltransferase compare
ABZR87_RS07380 -2.0 -7.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS08970 -2.0 -3.4 protein TolQ compare
ABZR87_RS09820 -2.0 -1.9 RidA family protein compare
ABZR87_RS20075 -2.0 -1.6 DUF2892 domain-containing protein compare
ABZR87_RS00195 -2.0 -2.9 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS16540 -2.0 -1.5 MarR family transcriptional regulator compare
ABZR87_RS07360 -2.0 -6.1 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02380 -2.0 -5.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS00185 -2.0 -2.8 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS14530 -2.0 -3.1 3-isopropylmalate dehydrogenase compare
ABZR87_RS14500 -2.0 -7.7 tryptophan synthase subunit beta compare
ABZR87_RS18180 -2.0 -3.1 hypothetical protein compare
ABZR87_RS20650 -2.0 -1.4 aspartate dehydrogenase compare
ABZR87_RS14535 -2.0 -3.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02160 -2.0 -3.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14965 -2.0 -1.9 DUF3619 family protein compare
ABZR87_RS08795 -1.9 -1.3 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS07450 -1.9 -2.9 dihydroneopterin triphosphate diphosphatase compare
ABZR87_RS16860 -1.9 -2.2 response regulator compare
ABZR87_RS23390 -1.9 -4.5 anti-sigma factor compare
ABZR87_RS13815 -1.9 -3.1 alpha/beta hydrolase compare
ABZR87_RS12145 -1.9 -2.9 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS22970 -1.9 -5.6 cystathionine gamma-synthase family protein compare
ABZR87_RS04105 -1.8 -2.2 ATP synthase subunit I compare
ABZR87_RS07605 -1.8 -2.1 D-aminoacyl-tRNA deacylase compare
ABZR87_RS20900 -1.8 -3.1 crotonase/enoyl-CoA hydratase family protein compare
ABZR87_RS02385 -1.8 -2.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS13790 -1.8 -5.2 chorismate synthase compare
ABZR87_RS02145 -1.8 -1.6 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS06405 -1.8 -1.0 hypothetical protein compare
ABZR87_RS04975 -1.8 -1.3 peptide deformylase compare
ABZR87_RS13285 -1.8 -7.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS18045 -1.8 -1.9 MBL fold metallo-hydrolase compare
ABZR87_RS05925 -1.8 -3.4 LysR family transcriptional regulator compare
ABZR87_RS13290 -1.8 -2.2 3-ketoacyl-ACP reductase compare
ABZR87_RS00435 -1.8 -1.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS18445 -1.8 -2.4 MaoC family dehydratase compare
ABZR87_RS10980 -1.7 -0.9 tRNA-Leu compare
ABZR87_RS10620 -1.7 -2.0 serine O-acetyltransferase compare
ABZR87_RS08985 -1.7 -5.1 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS17830 -1.7 -3.2 MBL fold metallo-hydrolase compare
ABZR87_RS12065 -1.7 -2.0 L-rhamnose mutarotase compare
ABZR87_RS11150 -1.7 -3.8 cytochrome-c oxidase, cbb3-type subunit II compare
ABZR87_RS11050 -1.7 -2.2 rhodanese-like domain-containing protein compare
ABZR87_RS17865 -1.7 -0.7 cation:proton antiporter compare
ABZR87_RS01165 -1.6 -1.4 VOC family protein compare
ABZR87_RS20225 -1.6 -2.9 type VI secretion system baseplate subunit TssE compare
ABZR87_RS12950 -1.6 -4.5 phage major capsid protein, P2 family compare
ABZR87_RS07345 -1.6 -3.5 hypothetical protein compare
ABZR87_RS04780 -1.6 -2.2 nitronate monooxygenase family protein compare
ABZR87_RS05990 -1.6 -2.1 AraC family transcriptional regulator compare
ABZR87_RS16270 -1.6 -0.9 cold-shock protein compare
ABZR87_RS10175 -1.6 -3.5 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS07510 -1.6 -1.9 LysR family transcriptional regulator compare
ABZR87_RS10425 -1.6 -3.2 DNA internalization-related competence protein ComEC/Rec2 compare
ABZR87_RS04640 -1.6 -2.2 hypothetical protein compare
ABZR87_RS02515 -1.6 -1.4 BolA family protein compare
ABZR87_RS23290 -1.6 -1.3 2-hydroxychromene-2-carboxylate isomerase compare
ABZR87_RS00350 -1.6 -3.2 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS09445 -1.6 -5.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS09915 -1.5 -1.8 endonuclease III compare
ABZR87_RS09000 -1.5 -4.3 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS12945 -1.5 -3.6 GPO family capsid scaffolding protein compare
ABZR87_RS01225 -1.5 -1.7 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS07295 -1.5 -2.6 YeeE/YedE family protein compare
ABZR87_RS04945 -1.5 -1.0 DUF4390 domain-containing protein compare
ABZR87_RS03435 -1.5 -3.5 type II secretion system protein GspL compare
ABZR87_RS17145 -1.5 -6.1 AMP nucleosidase compare
ABZR87_RS05535 -1.5 -3.4 HPP family protein compare
ABZR87_RS12780 -1.5 -0.8 HU family DNA-binding protein compare
ABZR87_RS02680 -1.5 -5.3 c-type cytochrome compare
ABZR87_RS21170 -1.5 -1.6 ABC transporter ATP-binding protein compare
ABZR87_RS02140 -1.5 -7.6 anthranilate synthase component I compare
ABZR87_RS09515 -1.5 -1.0 cysteine synthase CysM compare
ABZR87_RS22340 -1.5 -0.9 hypothetical protein compare
ABZR87_RS18695 -1.5 -4.5 sugar-binding transcriptional regulator compare
ABZR87_RS10085 -1.5 -1.0 Rne/Rng family ribonuclease compare
ABZR87_RS08980 -1.4 -2.0 cell envelope integrity protein TolA compare
ABZR87_RS06455 -1.4 -0.9 IclR family transcriptional regulator compare
ABZR87_RS16125 -1.4 -3.0 heme biosynthesis protein HemY compare
ABZR87_RS16055 -1.4 -3.6 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS11330 -1.4 -1.7 transcriptional repressor LexA compare
ABZR87_RS02550 -1.4 -2.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS20880 -1.4 -4.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS08915 -1.4 -1.1 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS00220 -1.4 -5.5 CysB family HTH-type transcriptional regulator compare
ABZR87_RS11160 -1.4 -2.2 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR87_RS12975 -1.4 -3.7 phage holin family protein compare
ABZR87_RS09895 -1.4 -0.9 DUF1841 family protein compare
ABZR87_RS07055 -1.3 -4.8 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS19485 -1.3 -1.2 H-NS histone family protein compare
ABZR87_RS15320 -1.3 -1.0 DUF969 domain-containing protein compare
ABZR87_RS04880 -1.3 -4.4 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS11705 -1.3 -2.7 dipeptide ABC transporter ATP-binding protein compare
ABZR87_RS12785 -1.3 -0.9 endopeptidase La compare
ABZR87_RS02440 -1.3 -3.3 twin-arginine translocase subunit TatC compare
ABZR87_RS11145 -1.3 -6.5 cytochrome-c oxidase, cbb3-type subunit I compare
ABZR87_RS15955 -1.3 -1.7 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS20370 -1.3 -0.7 ABC transporter ATP-binding protein compare
ABZR87_RS03440 -1.3 -4.1 type II secretion system protein GspM compare
ABZR87_RS07535 -1.3 -1.8 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS17890 -1.3 -3.4 FlxA-like family protein compare
ABZR87_RS12955 -1.3 -1.7 terminase endonuclease subunit compare
ABZR87_RS16170 -1.3 -0.9 argininosuccinate lyase compare
ABZR87_RS03410 -1.3 -4.0 type II secretion system major pseudopilin GspG compare
ABZR87_RS12970 -1.3 -1.0 putative holin compare
ABZR87_RS01280 -1.3 -2.5 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS20440 -1.3 -0.7 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS00830 -1.3 -2.3 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS10215 -1.3 -3.3 DNA repair protein RecO compare
ABZR87_RS12965 -1.3 -1.0 tail protein X compare
ABZR87_RS01510 -1.3 -1.6 YidB family protein compare
ABZR87_RS07050 -1.3 -0.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS12870 -1.2 -2.8 LysR family transcriptional regulator compare
ABZR87_RS12300 -1.2 -2.3 muconolactone Delta-isomerase compare
ABZR87_RS20140 -1.2 -1.3 PAAR domain-containing protein compare
ABZR87_RS21840 -1.2 -2.5 DUF4865 family protein compare
ABZR87_RS13645 -1.2 -0.7 hypothetical protein compare
ABZR87_RS21700 -1.2 -1.2 hypothetical protein compare
ABZR87_RS07975 -1.2 -1.1 DUF2889 domain-containing protein compare
ABZR87_RS19070 -1.2 -1.8 MFS transporter compare
ABZR87_RS16975 -1.2 -1.4 hypothetical protein compare
ABZR87_RS01780 -1.2 -0.6 MarC family protein compare
ABZR87_RS07335 -1.2 -1.6 hypothetical protein compare
ABZR87_RS05580 -1.2 -1.7 diaminopimelate epimerase compare
ABZR87_RS18635 -1.2 -2.4 multidrug transporter subunit MdtD compare
ABZR87_RS02525 -1.2 -1.8 ABC transporter ATP-binding protein compare
ABZR87_RS15280 -1.2 -2.3 hypothetical protein compare
ABZR87_RS09860 -1.2 -2.6 spermidine synthase compare
ABZR87_RS22225 -1.2 -3.8 3-ketoacyl-ACP reductase FabG2 compare
ABZR87_RS09450 -1.2 -2.1 prephenate dehydratase compare
ABZR87_RS15915 -1.2 -2.2 hypothetical protein compare
ABZR87_RS20230 -1.2 -2.0 Hcp family type VI secretion system effector compare
ABZR87_RS01685 -1.2 -2.9 histone H1-like DNA-binding protein compare
ABZR87_RS11970 -1.2 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in rhizosphere experiments