Experiment set3IT011 for Pantoea sp. MT58

Compare to:

copper (II) chloride dihydrate 1 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_15600 +1.4 5.6 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_18470 +1.4 12.6 ECA oligosaccharide polymerase compare
IAI47_18480 +1.3 10.2 lipid III flippase WzxE compare
IAI47_00670 +1.2 11.4 sugar glycosyltransferase compare
IAI47_11415 +1.1 2.3 hypothetical protein compare
IAI47_07020 +1.1 2.5 hypothetical protein compare
IAI47_03640 +1.1 9.7 glycosyltransferase compare
IAI47_03645 +1.0 9.5 O-antigen ligase family protein compare
IAI47_14700 +1.0 7.2 protoheme IX farnesyltransferase compare
IAI47_00675 +1.0 9.3 glycosyltransferase family 9 protein compare
IAI47_14940 +1.0 2.4 YaiI/YqxD family protein compare
IAI47_18490 +1.0 4.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_14680 +1.0 5.2 cytochrome o ubiquinol oxidase subunit II compare
IAI47_09550 +1.0 4.9 hypothetical protein compare
IAI47_01780 +1.0 1.7 Fe-S biogenesis protein NfuA compare
IAI47_07350 +1.0 1.7 hypothetical protein compare
IAI47_14325 +1.0 1.1 ribosome-associated protein YbcJ compare
IAI47_17285 +0.9 1.6 entericidin A/B family lipoprotein compare
IAI47_14695 +0.9 4.6 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_14685 +0.9 7.2 cytochrome o ubiquinol oxidase subunit I compare
IAI47_01820 +0.9 4.9 two-component system response regulator OmpR compare
IAI47_10500 +0.9 6.8 dipeptide/tripeptide permease DtpA compare
IAI47_18840 +0.8 1.6 membrane protein insertion efficiency factor YidD compare
IAI47_00290 +0.8 4.1 F0F1 ATP synthase subunit I compare
IAI47_01750 +0.8 4.8 glycerol-3-phosphate dehydrogenase compare
IAI47_10845 +0.8 2.8 major outer membrane lipoprotein compare
IAI47_07025 +0.8 4.5 glycosyltransferase family 4 protein compare
IAI47_15605 +0.8 1.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_13885 +0.8 1.2 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_14690 +0.8 5.1 cytochrome o ubiquinol oxidase subunit III compare
IAI47_15155 +0.7 3.0 DUF943 family protein compare
IAI47_13415 +0.7 5.9 L,D-transpeptidase family protein compare
IAI47_21600 +0.7 2.5 EamA family transporter compare
IAI47_14295 +0.7 2.4 hypothetical protein compare
IAI47_07475 +0.7 1.2 hypothetical protein compare
IAI47_00935 +0.7 3.5 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_06395 +0.7 1.2 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_08435 +0.7 1.8 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_08600 +0.7 1.9 TraR/DksA C4-type zinc finger protein compare
IAI47_21605 +0.7 5.9 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_00875 +0.6 1.4 met regulon transcriptional regulator MetJ compare
IAI47_21595 +0.6 4.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_03400 +0.6 4.2 deoxyribose-phosphate aldolase compare
IAI47_19890 +0.6 1.9 hypothetical protein compare
IAI47_03440 +0.6 1.7 general stress protein compare
IAI47_13765 +0.6 1.4 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_07010 +0.6 1.9 ABC transporter permease compare
IAI47_16670 +0.6 2.9 stress protein compare
IAI47_18520 +0.6 5.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_12370 +0.6 1.4 acyl carrier protein compare
IAI47_16405 +0.6 2.7 siderophore-iron reductase FhuF compare
IAI47_02725 +0.6 3.1 gamma-glutamylcyclotransferase compare
IAI47_14015 +0.6 2.7 ribosome silencing factor compare
IAI47_07005 +0.6 2.3 glycosyltransferase family 4 protein compare
IAI47_07015 +0.6 3.1 ABC transporter ATP-binding protein compare
IAI47_15895 +0.5 2.0 secA regulator SecM compare
IAI47_18505 +0.5 3.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI47_15485 +0.5 0.7 molecular chaperone Skp compare
IAI47_01180 +0.5 1.5 prolyl oligopeptidase family serine peptidase compare
IAI47_18240 +0.5 1.9 NAD(P)H-flavin reductase compare
IAI47_10320 +0.5 0.9 Rrf2 family transcriptional regulator compare
IAI47_10725 +0.5 1.5 DUF1656 domain-containing protein compare
IAI47_21180 +0.5 2.3 IS6 family transposase compare
IAI47_11870 +0.5 2.0 DUF2767 family protein compare
IAI47_06455 +0.5 2.7 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_14835 +0.5 4.2 branched-chain amino acid transporter carrier protein BrnQ compare
IAI47_07885 +0.5 0.8 tRNA-Asn compare
IAI47_17250 +0.5 4.0 cell division protein ZapE compare
IAI47_12435 +0.5 1.0 hypothetical protein compare
IAI47_19245 +0.5 1.8 SIS domain-containing protein compare
IAI47_18420 +0.5 3.9 class I adenylate cyclase compare
IAI47_15690 +0.5 2.3 hypoxanthine phosphoribosyltransferase compare
IAI47_11195 +0.5 2.2 SH3 domain-containing protein compare
IAI47_21610 +0.5 3.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_05860 +0.5 2.6 YlcG family protein compare
IAI47_21450 +0.5 1.1 general stress protein compare
IAI47_14815 +0.5 2.5 DUF479 domain-containing protein compare
IAI47_03235 +0.5 2.6 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_11205 +0.5 2.9 type VI secretion system membrane subunit TssM compare
IAI47_05865 +0.5 3.1 hypothetical protein compare
IAI47_19295 +0.5 1.4 hypothetical protein compare
IAI47_11480 +0.5 1.2 hypothetical protein compare
IAI47_11550 +0.5 1.6 hypothetical protein compare
IAI47_07030 +0.5 3.1 HAD family hydrolase compare
IAI47_06360 +0.5 1.3 NADH-quinone oxidoreductase subunit A compare
IAI47_09265 +0.5 1.7 LapA family protein compare
IAI47_11420 +0.4 1.0 hypothetical protein compare
IAI47_06415 +0.4 1.9 NADH-quinone oxidoreductase subunit M compare
IAI47_10795 +0.4 2.5 HTH-type transcriptional repressor PurR compare
IAI47_17050 +0.4 2.6 preprotein translocase subunit SecG compare
IAI47_15980 +0.4 2.9 catabolite repressor/activator compare
IAI47_15025 +0.4 1.4 transcriptional regulator LldR compare
IAI47_04335 +0.4 1.1 tRNA-Arg compare
IAI47_07000 +0.4 3.3 UDP-glucose 4-epimerase GalE compare
IAI47_14705 +0.4 2.9 MFS transporter compare
IAI47_03805 +0.4 2.2 FAD assembly factor SdhE compare
IAI47_17215 +0.4 0.6 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_21335 +0.4 1.7 RepB family plasmid replication initiator protein compare
IAI47_05050 +0.4 2.3 cytoskeleton protein RodZ compare
IAI47_05670 +0.4 2.0 AlpA family transcriptional regulator compare
IAI47_06965 +0.4 0.8 glycosyltransferase family 2 protein compare
IAI47_08590 +0.4 1.7 hypothetical protein compare
IAI47_03135 +0.4 2.1 outer membrane channel protein TolC compare
IAI47_10290 +0.4 2.0 barstar family protein compare
IAI47_00725 +0.4 1.8 rhodanese-like domain-containing protein compare
IAI47_06450 +0.4 1.6 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_13755 +0.4 2.6 succinate dehydrogenase flavoprotein subunit compare
IAI47_06625 +0.4 2.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_04945 +0.4 2.8 two-component system response regulator GlrR compare
IAI47_20470 +0.4 2.2 OmpA family protein compare
IAI47_13300 +0.4 1.1 GNAT family N-acetyltransferase compare
IAI47_06475 +0.4 1.7 transcriptional regulator RcsB compare
IAI47_13570 +0.4 1.5 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_06695 +0.4 2.1 ABC transporter ATP-binding protein compare
IAI47_18465 +0.4 3.0 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_01825 +0.4 2.6 two-component system sensor histidine kinase EnvZ compare
IAI47_00840 +0.4 2.1 ribonuclease E activity regulator RraA compare
IAI47_15595 +0.4 0.7 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_07455 +0.4 1.9 hypothetical protein compare
IAI47_04580 +0.4 2.2 ABC transporter ATP-binding protein compare
IAI47_08420 +0.4 1.7 DUF72 domain-containing protein compare
IAI47_13065 +0.4 0.8 DUF1418 family protein compare
IAI47_19435 +0.4 1.8 23S rRNA pseudouridine(2604) synthase RluF compare
IAI47_12170 +0.3 2.5 flagellar basal body P-ring formation protein FlgA compare
IAI47_00825 +0.3 3.1 glycerol kinase GlpK compare
IAI47_11500 +0.3 1.3 type VI secretion system tip protein VgrG compare
IAI47_07795 +0.3 1.8 phosphonate metabolism protein PhnP compare
IAI47_00845 +0.3 2.3 HslU--HslV peptidase ATPase subunit compare
IAI47_09280 +0.3 1.4 stress response translation initiation inhibitor YciH compare
IAI47_11400 +0.3 2.5 hypothetical protein compare
IAI47_07530 +0.3 2.0 type III restriction-modification system endonuclease compare
IAI47_15345 +0.3 3.0 murein transglycosylase D compare
IAI47_19685 +0.3 1.4 hypothetical protein compare
IAI47_17080 +0.3 2.0 transcription elongation factor GreA compare
IAI47_13540 +0.3 2.0 kinase inhibitor compare
IAI47_03865 +0.3 1.3 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_09260 +0.3 1.7 phosphatidylglycerophosphatase B compare
IAI47_13290 +0.3 2.3 DNA-binding protein YbiB compare
IAI47_16950 +0.3 1.5 GIY-YIG nuclease family protein compare
IAI47_01275 +0.3 1.8 hypothetical protein compare
IAI47_17825 +0.3 1.9 MmcQ/YjbR family DNA-binding protein compare
IAI47_19710 +0.3 0.9 helix-turn-helix transcriptional regulator compare
IAI47_11235 +0.3 2.1 gamma-glutamylcyclotransferase compare
IAI47_03170 +0.3 1.9 antibiotic biosynthesis monooxygenase compare
IAI47_12645 +0.3 0.9 porin OmpA compare
IAI47_07490 +0.3 1.0 DNA-binding protein compare
IAI47_04070 +0.3 1.9 flavodoxin compare
IAI47_07610 +0.3 2.1 ABC transporter permease compare
IAI47_19690 +0.3 0.6 hypothetical protein compare
IAI47_08865 +0.3 1.5 fumarylacetoacetate hydrolase family protein compare
IAI47_13750 +0.3 1.4 succinate dehydrogenase iron-sulfur subunit compare
IAI47_11220 +0.3 1.8 serine/threonine-protein phosphatase compare
IAI47_01100 +0.3 2.5 malate dehydrogenase (quinone) compare
IAI47_08755 +0.3 1.3 DUF986 domain-containing protein compare
IAI47_06035 +0.3 2.3 acyltransferase compare
IAI47_13710 +0.3 1.4 cyd operon protein YbgE compare
IAI47_09435 +0.3 2.0 GtrA family protein compare
IAI47_03745 +0.3 1.6 YecA family protein compare
IAI47_13220 +0.3 1.6 flavin reductase family protein compare
IAI47_12160 +0.3 2.0 flagellar basal body rod protein FlgC compare
IAI47_14465 +0.3 1.5 recombination protein RecR compare
IAI47_19275 +0.3 1.2 DMT family transporter compare
IAI47_21780 +0.3 1.5 hypothetical protein compare
IAI47_17425 +0.3 1.2 DUF3304 domain-containing protein compare
IAI47_20600 +0.3 1.0 hypothetical protein compare
IAI47_17165 +0.3 1.9 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_00755 +0.3 2.2 envelope stress sensor histidine kinase CpxA compare
IAI47_09285 +0.3 1.4 osmotically-inducible lipoprotein OsmB compare
IAI47_13075 +0.3 1.8 hypothetical protein compare
IAI47_08725 +0.3 1.2 hypothetical protein compare
IAI47_15235 +0.3 0.8 hydroxyisourate hydrolase compare
IAI47_10545 +0.3 1.0 hypothetical protein compare
IAI47_12165 +0.3 1.6 flagellar basal body rod protein FlgB compare
IAI47_10440 +0.3 1.8 DUF2569 domain-containing protein compare
IAI47_03885 +0.3 2.0 FCD domain-containing protein compare
IAI47_05720 +0.3 1.5 hypothetical protein compare
IAI47_05955 +0.3 1.2 hypothetical protein compare
IAI47_18510 +0.3 2.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_15145 +0.3 1.8 beta-Ala-His dipeptidase compare
IAI47_08045 +0.3 0.7 NUDIX domain-containing protein compare
IAI47_04075 +0.3 1.8 galactarate dehydratase compare
IAI47_00770 +0.3 0.4 general stress protein compare
IAI47_03240 +0.3 1.3 TonB system transport protein ExbD compare
IAI47_19725 +0.3 1.7 chemotaxis protein compare
IAI47_03950 +0.3 1.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
IAI47_09860 +0.3 1.4 RES family NAD+ phosphorylase compare
IAI47_05080 +0.3 0.9 zinc ribbon domain-containing protein compare
IAI47_03325 +0.3 1.4 hypothetical protein compare
IAI47_00130 +0.3 1.9 LacI family DNA-binding transcriptional regulator compare
IAI47_00850 +0.3 1.7 ATP-dependent protease subunit HslV compare
IAI47_01355 +0.3 1.5 universal stress protein UspA compare
IAI47_14910 +0.3 1.3 recombination-associated protein RdgC compare
IAI47_21250 +0.3 1.3 helix-turn-helix domain-containing protein compare
IAI47_06780 +0.3 1.7 iron-sulfur cluster carrier protein ApbC compare
IAI47_08525 +0.3 1.5 DNA polymerase III subunit theta compare
IAI47_05970 +0.3 1.5 hypothetical protein compare
IAI47_17155 +0.3 1.8 calcium/sodium antiporter compare
IAI47_13050 +0.3 0.9 YbjN domain-containing protein compare
IAI47_04235 +0.3 2.2 RNA polymerase sigma factor RpoS compare
IAI47_00835 +0.3 1.0 cell division protein ZapB compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress copper (II) chloride dihydrate across organisms