Experiment set3IT011 for Herbaspirillum seropedicae SmR1
Sodium D,L-Lactate carbon source
Group: carbon sourceMedia: NFbHP_noCarbon + Sodium D,L-Lactate (5 g/L), pH=6.5
Culturing: HerbieS_ML4, flask, Aerobic, at 30 (C), shaken=120 rpm
Growth: about 5.4 generations
By: Thalita Tuleski on 19-May-16
Specific Phenotypes
For 6 genes in this experiment
For carbon source Sodium D,L-Lactate in Herbaspirillum seropedicae SmR1
For carbon source Sodium D,L-Lactate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-gluconate and ketogluconates metabolism | 3 |
| Glycolate, glyoxylate interconversions | 1 |
| Photorespiration (oxidative C2 cycle) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glycolate and glyoxylate degradation II | 2 | 2 | 1 |
| glycolate and glyoxylate degradation III | 3 | 1 | 1 |
| glycolate and glyoxylate degradation I | 4 | 3 | 1 |
| glucose degradation (oxidative) | 5 | 3 | 1 |
| superpathway of glycol metabolism and degradation | 7 | 5 | 1 |
| L-ascorbate biosynthesis VIII (engineered pathway) | 7 | 3 | 1 |
| photorespiration III | 9 | 5 | 1 |
| photorespiration I | 9 | 5 | 1 |
| photorespiration II | 10 | 6 | 1 |