Experiment set3IT011 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 2; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -4.9 -3.4 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -4.8 -3.3 NUDIX domain-containing protein compare
ABZR87_RS23035 -4.7 -3.2 PIG-L family deacetylase compare
ABZR87_RS13250 -4.4 -3.0 phosphoserine phosphatase SerB compare
ABZR87_RS08695 -4.0 -11.0 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS22970 -3.8 -7.8 cystathionine gamma-synthase family protein compare
ABZR87_RS14500 -3.8 -9.3 tryptophan synthase subunit beta compare
ABZR87_RS20785 -3.7 -1.5 DUF2783 domain-containing protein compare
ABZR87_RS02640 -3.7 -8.9 diaminopimelate decarboxylase compare
ABZR87_RS08235 -3.7 -1.5 hypothetical protein compare
ABZR87_RS02485 -3.6 -1.5 MarC family protein compare
ABZR87_RS05580 -3.5 -3.4 diaminopimelate epimerase compare
ABZR87_RS14890 -3.5 -1.4 preprotein translocase subunit SecG compare
ABZR87_RS20440 -3.4 -1.4 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS14490 -3.4 -4.0 tryptophan synthase subunit alpha compare
ABZR87_RS08630 -3.3 -5.1 dihydroorotase compare
ABZR87_RS12965 -3.3 -3.4 tail protein X compare
ABZR87_RS02160 -3.3 -4.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS13790 -3.2 -4.9 chorismate synthase compare
ABZR87_RS03420 -3.1 -1.3 type II secretion system minor pseudopilin GspI compare
ABZR87_RS05205 -3.1 -4.7 methionine biosynthesis protein MetW compare
ABZR87_RS14505 -3.1 -3.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS07380 -3.0 -6.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02565 -3.0 -4.1 glutamate synthase subunit beta compare
ABZR87_RS09450 -3.0 -6.1 prephenate dehydratase compare
ABZR87_RS08640 -3.0 -4.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS07360 -2.9 -6.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS08990 -2.9 -2.8 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS22340 -2.9 -1.7 hypothetical protein compare
ABZR87_RS09465 -2.9 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS13145 -2.9 -3.4 hypothetical protein compare
ABZR87_RS14540 -2.8 -4.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02595 -2.8 -8.4 shikimate kinase compare
ABZR87_RS02140 -2.7 -11.9 anthranilate synthase component I compare
ABZR87_RS08980 -2.7 -1.9 cell envelope integrity protein TolA compare
ABZR87_RS02570 -2.7 -14.4 glutamate synthase-related protein compare
ABZR87_RS21950 -2.7 -6.1 hypothetical protein compare
ABZR87_RS05100 -2.7 -2.6 RNA polymerase-binding protein DksA compare
ABZR87_RS17125 -2.7 -2.4 DUF2141 domain-containing protein compare
ABZR87_RS05200 -2.7 -11.5 homoserine O-acetyltransferase compare
ABZR87_RS02590 -2.6 -5.9 3-dehydroquinate synthase compare
ABZR87_RS02655 -2.6 -7.1 anti-sigma factor compare
ABZR87_RS20875 -2.6 -4.7 LysR family transcriptional regulator compare
ABZR87_RS00185 -2.6 -3.1 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS13290 -2.6 -3.6 3-ketoacyl-ACP reductase compare
ABZR87_RS22920 -2.5 -3.4 phosphogluconate dehydratase compare
ABZR87_RS15715 -2.5 -5.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS11170 -2.4 -1.0 FixH family protein compare
ABZR87_RS03435 -2.4 -4.6 type II secretion system protein GspL compare
ABZR87_RS02375 -2.4 -5.1 cytochrome c1 compare
ABZR87_RS00220 -2.4 -8.1 CysB family HTH-type transcriptional regulator compare
ABZR87_RS21365 -2.3 -1.3 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS06350 -2.3 -7.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS05305 -2.3 -7.5 TetR family transcriptional regulator compare
ABZR87_RS07290 -2.2 -1.4 DUF6691 family protein compare
ABZR87_RS07510 -2.2 -2.2 LysR family transcriptional regulator compare
ABZR87_RS03550 -2.2 -2.7 response regulator transcription factor compare
ABZR87_RS06715 -2.2 -3.3 PTS sugar transporter subunit IIA compare
ABZR87_RS08970 -2.2 -3.9 protein TolQ compare
ABZR87_RS01225 -2.2 -2.1 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS17270 -2.2 -1.3 hypothetical protein compare
ABZR87_RS06705 -2.2 -7.8 glutamate--cysteine ligase compare
ABZR87_RS05645 -2.2 -2.1 SDR family oxidoreductase compare
ABZR87_RS07760 -2.2 -2.6 HlyC/CorC family transporter compare
ABZR87_RS14190 -2.2 -9.3 DUF2589 domain-containing protein compare
ABZR87_RS06400 -2.1 -7.1 response regulator transcription factor compare
ABZR87_RS14530 -2.1 -3.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS03410 -2.1 -4.9 type II secretion system major pseudopilin GspG compare
ABZR87_RS16660 -2.1 -4.9 helix-turn-helix domain-containing protein compare
ABZR87_RS03460 -2.1 -8.2 type II secretion system inner membrane protein GspF compare
ABZR87_RS12960 -2.1 -1.2 head completion/stabilization protein compare
ABZR87_RS04975 -2.1 -1.4 peptide deformylase compare
ABZR87_RS02145 -2.1 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS09445 -2.1 -6.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS10175 -2.0 -3.9 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS00435 -2.0 -1.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS03665 -2.0 -3.9 MarR family transcriptional regulator compare
ABZR87_RS08985 -2.0 -5.1 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS22980 -2.0 -1.9 hypothetical protein compare
ABZR87_RS01555 -2.0 -1.2 barstar family protein compare
ABZR87_RS02385 -2.0 -3.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS13705 -2.0 -1.4 integration host factor subunit alpha compare
ABZR87_RS20155 -2.0 -3.3 type VI secretion system-associated protein TagF compare
ABZR87_RS00210 -2.0 -5.8 nitrite/sulfite reductase compare
ABZR87_RS20680 -2.0 -1.7 SDR family oxidoreductase compare
ABZR87_RS01810 -2.0 -2.4 glutamate 5-kinase compare
ABZR87_RS16055 -2.0 -4.4 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS02155 -2.0 -3.3 anthranilate phosphoribosyltransferase compare
ABZR87_RS12260 -1.9 -2.3 (2Fe-2S)-binding protein compare
ABZR87_RS14375 -1.9 -1.3 fumarate hydratase compare
ABZR87_RS10980 -1.9 -1.1 tRNA-Leu compare
ABZR87_RS17980 -1.9 -5.4 CheR family methyltransferase compare
ABZR87_RS15325 -1.9 -3.8 5-oxoprolinase subunit PxpA compare
ABZR87_RS11125 -1.9 -3.3 cell division protein ZapE compare
ABZR87_RS00190 -1.9 -6.4 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS13285 -1.9 -8.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS01110 -1.8 -5.3 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS02075 -1.8 -1.7 23S ribosomal RNA compare
ABZR87_RS03425 -1.8 -4.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS10195 -1.8 -1.7 signal peptidase I compare
ABZR87_RS20245 -1.8 -2.3 hypothetical protein compare
ABZR87_RS20880 -1.8 -5.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS21245 -1.8 -1.0 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS22710 -1.8 -3.1 VOC family protein compare
ABZR87_RS09515 -1.7 -1.2 cysteine synthase CysM compare
ABZR87_RS10170 -1.7 -3.1 RseA family anti-sigma factor compare
ABZR87_RS01645 -1.7 -3.3 type II 3-dehydroquinate dehydratase compare
ABZR87_RS00200 -1.7 -2.7 phosphoadenylyl-sulfate reductase compare
ABZR87_RS01450 -1.7 -1.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS00580 -1.7 -2.7 hypothetical protein compare
ABZR87_RS06845 -1.7 -5.8 heme o synthase compare
ABZR87_RS08610 -1.7 -3.6 YqgE/AlgH family protein compare
ABZR87_RS13475 -1.7 -3.4 PAS domain S-box protein compare
ABZR87_RS04785 -1.6 -5.4 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS03430 -1.6 -6.5 type II secretion system minor pseudopilin GspK compare
ABZR87_RS00205 -1.6 -1.8 DUF934 domain-containing protein compare
ABZR87_RS22330 -1.6 -2.8 hypothetical protein compare
ABZR87_RS23095 -1.6 -1.0 MarR family transcriptional regulator compare
ABZR87_RS09895 -1.6 -1.1 DUF1841 family protein compare
ABZR87_RS17440 -1.6 -0.8 (2Fe-2S)-binding protein compare
ABZR87_RS12650 -1.6 -3.8 peptidylprolyl isomerase compare
ABZR87_RS16185 -1.6 -1.1 dCTP deaminase compare
ABZR87_RS02545 -1.6 -2.7 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS17145 -1.6 -7.6 AMP nucleosidase compare
ABZR87_RS03450 -1.6 -7.6 type II secretion system secretin GspD compare
ABZR87_RS22035 -1.6 -2.8 hypothetical protein compare
ABZR87_RS12945 -1.6 -3.9 GPO family capsid scaffolding protein compare
ABZR87_RS14965 -1.6 -2.1 DUF3619 family protein compare
ABZR87_RS04865 -1.6 -1.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00295 -1.6 -2.8 ABC transporter ATP-binding protein compare
ABZR87_RS02305 -1.5 -1.5 CDGSH iron-sulfur domain-containing protein compare
ABZR87_RS12665 -1.5 -1.1 ABC transporter ATP-binding protein compare
ABZR87_RS16170 -1.5 -1.1 argininosuccinate lyase compare
ABZR87_RS14415 -1.5 -0.8 hemin uptake protein HemP compare
ABZR87_RS03455 -1.5 -6.2 type II secretion system ATPase GspE compare
ABZR87_RS02380 -1.5 -5.6 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS22690 -1.5 -2.1 XRE family transcriptional regulator compare
ABZR87_RS21925 -1.5 -1.5 hypothetical protein compare
ABZR87_RS12955 -1.5 -2.4 terminase endonuclease subunit compare
ABZR87_RS12345 -1.5 -0.9 dethiobiotin synthase compare
ABZR87_RS07050 -1.5 -1.0 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS02320 -1.5 -1.9 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS06030 -1.5 -0.9 AraC family transcriptional regulator compare
ABZR87_RS04880 -1.5 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS11760 -1.5 -0.9 membrane protein compare
ABZR87_RS14535 -1.5 -2.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS20555 -1.5 -3.2 helix-turn-helix transcriptional regulator compare
ABZR87_RS18255 -1.5 -1.1 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS06710 -1.5 -8.4 glutathione synthase compare
ABZR87_RS17730 -1.5 -3.7 GntR family transcriptional regulator compare
ABZR87_RS08965 -1.5 -2.5 tol-pal system-associated acyl-CoA thioesterase compare
ABZR87_RS13645 -1.5 -0.8 hypothetical protein compare
ABZR87_RS07215 -1.5 -1.7 hotdog family protein compare
ABZR87_RS05060 -1.4 -2.2 DUF484 family protein compare
ABZR87_RS16515 -1.4 -1.2 helix-turn-helix domain-containing protein compare
ABZR87_RS10955 -1.4 -4.3 protease modulator HflC compare
ABZR87_RS17310 -1.4 -3.8 PadR family transcriptional regulator compare
ABZR87_RS14360 -1.4 -6.1 acetate--CoA ligase compare
ABZR87_RS03850 -1.4 -3.2 ureidoglycolate lyase compare
ABZR87_RS00215 -1.4 -5.0 sulfite exporter TauE/SafE family protein compare
ABZR87_RS04160 -1.4 -2.0 LysR family transcriptional regulator compare
ABZR87_RS12785 -1.4 -1.4 endopeptidase La compare
ABZR87_RS02440 -1.4 -3.8 twin-arginine translocase subunit TatC compare
ABZR87_RS07055 -1.4 -5.2 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS15605 -1.4 -1.3 hypothetical protein compare
ABZR87_RS10950 -1.4 -6.3 FtsH protease activity modulator HflK compare
ABZR87_RS13770 -1.4 -5.4 CoA transferase subunit A compare
ABZR87_RS14970 -1.4 -2.8 DUF3106 domain-containing protein compare
ABZR87_RS01285 -1.4 -0.9 preprotein translocase subunit YajC compare
ABZR87_RS00685 -1.3 -2.2 hypothetical protein compare
ABZR87_RS01855 -1.3 -5.1 A24 family peptidase compare
ABZR87_RS02680 -1.3 -5.2 c-type cytochrome compare
ABZR87_RS01780 -1.3 -0.6 MarC family protein compare
ABZR87_RS07355 -1.3 -4.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS11015 -1.3 -2.2 amino-acid N-acetyltransferase compare
ABZR87_RS17565 -1.3 -2.5 helix-turn-helix transcriptional regulator compare
ABZR87_RS03440 -1.3 -3.3 type II secretion system protein GspM compare
ABZR87_RS06770 -1.3 -4.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS06090 -1.3 -2.2 YoaK family protein compare
ABZR87_RS06250 -1.3 -2.5 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS08795 -1.3 -1.9 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS17985 -1.3 -3.1 chemoreceptor glutamine deamidase CheD compare
ABZR87_RS18000 -1.3 -2.1 protein phosphatase CheZ compare
ABZR87_RS20450 -1.3 -1.0 HAD family phosphatase compare
ABZR87_RS03265 -1.3 -2.2 high-potential iron-sulfur protein compare
ABZR87_RS21955 -1.3 -3.4 hypothetical protein compare
ABZR87_RS11925 -1.2 -5.4 phosphoenolpyruvate synthase compare
ABZR87_RS04335 -1.2 -5.0 septum site-determining protein MinC compare
ABZR87_RS02220 -1.2 -4.2 redox-regulated ATPase YchF compare
ABZR87_RS02445 -1.2 -1.9 Sec-independent protein translocase protein TatB compare
ABZR87_RS19750 -1.2 -2.7 DNA-binding domain-containing protein compare
ABZR87_RS22915 -1.2 -5.5 glucose-6-phosphate dehydrogenase compare
ABZR87_RS04780 -1.2 -2.1 nitronate monooxygenase family protein compare
ABZR87_RS23470 -1.2 -1.4 malonate decarboxylase holo-ACP synthase compare
ABZR87_RS11495 -1.2 -1.3 NADPH-dependent FMN reductase compare
ABZR87_RS11625 -1.2 -5.0 malate synthase A compare
ABZR87_RS12950 -1.2 -3.7 phage major capsid protein, P2 family compare
ABZR87_RS04995 -1.2 -0.8 DNA topoisomerase III compare
ABZR87_RS02540 -1.2 -1.8 VacJ family lipoprotein compare
ABZR87_RS00865 -1.2 -1.0 VTT domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment