Experiment set3IT010 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -6.8 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS19005 -6.3 -4.3 3-dehydroquinate synthase compare
RR42_RS06485 -6.0 -5.8 chorismate synthase compare
RR42_RS14385 -5.9 -4.1 3-isopropylmalate dehydrogenase compare
RR42_RS14400 -5.6 -3.8 isopropylmalate isomerase compare
RR42_RS11795 -5.2 -4.9 PEP synthetase regulatory protein compare
RR42_RS12980 -5.0 -6.0 chemotaxis protein CheY compare
RR42_RS18300 -4.9 -5.8 anthranilate synthase subunit II compare
RR42_RS05860 -4.8 -6.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS15905 -4.8 -11.5 phosphoenolpyruvate carboxylase compare
RR42_RS33255 -4.7 -4.5 protein-tyrosine phosphatase compare
RR42_RS14390 -4.6 -5.4 3-isopropylmalate dehydratase compare
RR42_RS16965 -4.4 -6.3 ABC transporter compare
RR42_RS18295 -4.0 -10.9 anthranilate synthase component I compare
RR42_RS18990 -3.9 -18.1 glutamate synthase compare
RR42_RS11790 -3.8 -9.8 phosphoenolpyruvate synthase compare
RR42_RS04475 -3.8 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS01845 -3.7 -2.3 glycerol-3-phosphate dehydrogenase compare
RR42_RS18485 -3.6 -1.6 glutaredoxin compare
RR42_RS12040 -3.6 -13.4 MFS transporter compare
RR42_RS14320 -3.5 -6.7 O-succinylhomoserine sulfhydrylase compare
RR42_RS01385 -3.5 -3.2 5,10-methylenetetrahydrofolate reductase compare
RR42_RS11885 -3.5 -11.2 (protein-PII) uridylyltransferase compare
RR42_RS14365 -3.5 -3.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS01160 -3.4 -7.2 homoserine O-acetyltransferase compare
RR42_RS33260 -3.3 -9.1 multidrug MFS transporter compare
RR42_RS20080 -3.3 -11.2 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
RR42_RS12985 -3.3 -8.4 histidine kinase compare
RR42_RS18985 -3.2 -6.7 glutamate synthase compare
RR42_RS02085 -3.1 -7.7 RNA polymerase subunit sigma-54 compare
RR42_RS30660 -3.0 -8.9 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS16960 -3.0 -6.8 ABC transporter ATP-binding protein compare
RR42_RS18850 -3.0 -3.1 preprotein translocase subunit TatC compare
RR42_RS19065 -3.0 -12.0 transcriptional regulator compare
RR42_RS16245 -2.9 -5.7 uroporphyrin-III methyltransferase compare
RR42_RS33250 -2.8 -9.0 tyrosine protein kinase compare
RR42_RS16270 -2.8 -7.7 sulfite reductase compare
RR42_RS16975 -2.8 -7.2 ABC transporter permease compare
RR42_RS15890 -2.7 -8.8 heme biosynthesis protein HemY compare
RR42_RS30655 -2.6 -7.7 LysR family transcriptional regulator compare
RR42_RS16970 -2.6 -10.9 ABC transporter ATP-binding protein compare
RR42_RS16280 -2.5 -5.3 transcriptional regulator compare
RR42_RS17720 -2.5 -3.3 sugar kinase compare
RR42_RS17555 -2.5 -1.3 hypothetical protein compare
RR42_RS13800 -2.5 -5.8 formyltetrahydrofolate deformylase compare
RR42_RS17105 -2.4 -10.5 Clp protease ClpX compare
RR42_RS12050 -2.3 -6.9 DNA polymerase compare
RR42_RS15640 -2.3 -2.0 hypothetical protein compare
RR42_RS21720 -2.3 -2.5 acetoin catabolism protein X compare
RR42_RS04460 -2.3 -4.3 chorismate mutase compare
RR42_RS33240 -2.3 -12.6 GDP-L-fucose synthase compare
RR42_RS15895 -2.3 -5.1 uroporphyrinogen III methyltransferase compare
RR42_RS16265 -2.2 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS16980 -2.2 -11.2 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS02705 -2.2 -3.0 Holliday junction DNA helicase RuvA compare
RR42_RS16250 -2.1 -7.2 sulfate adenylyltransferase compare
RR42_RS14790 -2.1 -7.7 cobalamin biosynthesis protein CobD compare
RR42_RS33355 -2.1 -5.5 membrane protein compare
RR42_RS01755 -2.0 -4.2 nitrogen regulatory protein P-II 1 compare
RR42_RS33245 -2.0 -8.0 mannose-1-phosphate guanyltransferase compare
RR42_RS07605 -2.0 -6.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS16255 -2.0 -7.3 sulfate adenylyltransferase compare
RR42_RS04895 -1.9 -9.7 serine/threonine protein phosphatase compare
RR42_RS19010 -1.9 -4.7 shikimate kinase compare
RR42_RS16275 -1.9 -4.2 membrane protein compare
RR42_RS15410 -1.8 -5.1 membrane protein compare
RR42_RS21295 -1.8 -3.6 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS00115 -1.8 -2.5 hypothetical protein compare
RR42_RS00725 -1.7 -3.7 hypothetical protein compare
RR42_RS02045 -1.7 -11.1 GTPase compare
RR42_RS14585 -1.7 -5.0 L-PSP family endoribonuclease compare
RR42_RS02775 -1.7 -2.7 molecular chaperone SurA compare
RR42_RS29865 -1.7 -3.4 hypothetical protein compare
RR42_RS19045 -1.7 -1.2 frataxin compare
RR42_RS14965 -1.7 -3.1 hypothetical protein compare
RR42_RS20070 -1.6 -7.6 glycine dehydrogenase compare
RR42_RS20205 -1.6 -2.3 chromosome partitioning protein compare
RR42_RS16260 -1.6 -2.0 phosphoadenosine phosphosulfate reductase compare
RR42_RS17060 -1.6 -10.3 histidine kinase compare
RR42_RS33235 -1.6 -7.2 GDP-mannose 4,6-dehydratase compare
RR42_RS14360 -1.6 -0.8 tryptophan synthase subunit alpha compare
RR42_RS19885 -1.6 -1.2 aminoglycoside transporter compare
RR42_RS21220 -1.5 -1.9 iron transporter FeoB compare
RR42_RS03920 -1.5 -2.8 rubredoxin compare
RR42_RS34520 -1.5 -1.3 transposase compare
RR42_RS21695 -1.5 -3.1 DNA-binding protein compare
RR42_RS06630 -1.5 -2.5 integration host factor subunit alpha compare
RR42_RS04535 -1.5 -4.3 cysteine synthase compare
RR42_RS07385 -1.5 -2.7 Phasin (PHA-granule associated protein) compare
RR42_RS17645 -1.5 -6.4 shikimate dehydrogenase compare
RR42_RS10845 -1.5 -3.6 cupin compare
RR42_RS32740 -1.5 -1.2 enoyl-CoA hydratase compare
RR42_RS00715 -1.4 -2.7 ferritin compare
RR42_RS12305 -1.4 -1.3 hypothetical protein compare
RR42_RS05990 -1.4 -6.7 aromatic amino acid aminotransferase compare
RR42_RS04735 -1.4 -1.4 hypothetical protein compare
RR42_RS31735 -1.4 -2.8 ABC transporter ATP-binding protein compare
RR42_RS00540 -1.4 -7.7 hypothetical protein compare
RR42_RS34650 -1.3 -4.1 LacI family transcriptional regulator compare
RR42_RS01780 -1.3 -6.3 glutathione synthetase compare
RR42_RS12015 -1.3 -2.6 dihydrolipoamide acyltransferase compare
RR42_RS04205 -1.3 -2.7 glycine cleavage system regulatory protein compare
RR42_RS15470 -1.3 -1.7 biopolymer transporter ExbD compare
RR42_RS21040 -1.3 -1.1 hypothetical protein compare
RR42_RS04700 -1.3 -1.0 ribonuclease G compare
RR42_RS04245 -1.3 -3.3 chemotaxis protein CheY compare
RR42_RS01760 -1.3 -7.8 ammonia channel protein conserved
RR42_RS07330 -1.3 -5.0 histidine utilization repressor compare
RR42_RS19695 -1.3 -2.6 cytochrome C protein compare
RR42_RS19410 -1.3 -5.2 GntR family transcriptional regulator compare
RR42_RS25785 -1.3 -2.3 TetR family transcriptional regulator compare
RR42_RS15090 -1.3 -4.3 DNA helicase compare
RR42_RS13910 -1.3 -5.0 glutamate racemase compare
RR42_RS24040 -1.3 -4.5 hypothetical protein compare
RR42_RS07440 -1.2 -2.7 hypothetical protein compare
RR42_RS00790 -1.2 -4.5 chemotaxis protein CheY compare
RR42_RS20195 -1.2 -1.1 ATPase F0F1 compare
RR42_RS16240 -1.2 -1.0 cobalamin biosynthesis protein CbiX compare
RR42_RS35875 -1.2 -5.9 UDP-galactose-4-epimerase compare
RR42_RS01775 -1.2 -4.2 glutamate--cysteine ligase compare
RR42_RS03940 -1.2 -1.6 membrane protein compare
RR42_RS21605 -1.2 -1.7 S-adenosylhomocysteine hydrolase compare
RR42_RS18855 -1.2 -1.6 preprotein translocase compare
RR42_RS04250 -1.2 -3.1 chemotaxis protein CheY compare
RR42_RS37400 -1.2 -1.0 6-phosphogluconolactonase compare
RR42_RS01290 -1.2 -4.0 thiamine biosynthesis protein ThiC compare
RR42_RS24510 -1.2 -1.4 hypothetical protein compare
RR42_RS28720 -1.2 -2.5 hypothetical protein compare
RR42_RS21000 -1.2 -2.2 glycosyl transferase compare
RR42_RS13275 -1.2 -4.4 antibiotic biosynthesis monooxygenase compare
RR42_RS02385 -1.2 -2.8 hydrolase compare
RR42_RS06325 -1.2 -1.6 serine O-acetyltransferase compare
RR42_RS15740 -1.2 -2.8 hypothetical protein compare
RR42_RS07555 -1.2 -1.6 potassium transporter Kup compare
RR42_RS17390 -1.2 -3.8 ATP-dependent DNA helicase RecG compare
RR42_RS01380 -1.1 -2.0 membrane protein compare
RR42_RS02320 -1.1 -4.1 trehalose phosphatase compare
RR42_RS15845 -1.1 -2.2 biotin transporter BioY compare
RR42_RS09100 -1.1 -4.6 transcriptional regulator compare
RR42_RS24605 -1.1 -5.6 TetR family transcriptional regulator compare
RR42_RS03005 -1.1 -2.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS16930 -1.1 -1.9 sulfonate ABC transporter ATP-binding protein compare
RR42_RS21280 -1.1 -5.6 L-lactate permease compare
RR42_RS13195 -1.1 -4.7 protein-L-isoaspartate O-methyltransferase compare
RR42_RS00830 -1.1 -5.0 cell division protein FtsN compare
RR42_RS21285 -1.1 -5.2 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS19510 -1.1 -3.6 general secretion pathway protein GspM compare
RR42_RS20060 -1.1 -3.2 glycine cleavage system protein T compare
RR42_RS09555 -1.1 -1.7 universal stress protein UspA compare
RR42_RS32590 -1.1 -1.5 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS12155 -1.0 -2.0 molecular chaperone compare
RR42_RS19445 -1.0 -3.9 TetR family transcriptional regulator compare
RR42_RS16950 -1.0 -3.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS03315 -1.0 -3.4 RND transporter MFP subunit compare
RR42_RS13025 -1.0 -2.3 hypothetical protein compare
RR42_RS13015 -1.0 -4.4 fatty acid hydroxylase compare
RR42_RS08365 -1.0 -5.6 hypothetical protein compare
RR42_RS06250 -1.0 -1.9 dihydrodipicolinate synthase compare
RR42_RS21080 -1.0 -2.3 3-isopropylmalate dehydratase compare
RR42_RS35780 -1.0 -1.6 chemotaxis protein CheY compare
RR42_RS04135 -1.0 -1.2 pilus assembly protein CpaB compare
RR42_RS00545 -1.0 -2.9 transglutaminase compare
RR42_RS20095 -1.0 -2.5 peroxiredoxin compare
RR42_RS27045 -1.0 -2.7 hypothetical protein compare
RR42_RS06015 -1.0 -6.8 recombinase compare
RR42_RS07615 -1.0 -2.0 3-ketoacyl-ACP reductase compare
RR42_RS21055 -1.0 -3.0 excisionase compare
RR42_RS20295 -1.0 -1.8 alpha/beta hydrolase compare
RR42_RS02870 -1.0 -3.6 RNA helicase compare
RR42_RS10310 -1.0 -1.8 NADPH:quinone reductase compare
RR42_RS23685 -1.0 -4.6 transcriptional regulator compare
RR42_RS15465 -1.0 -1.6 TonB-dependent receptor compare
RR42_RS15865 -1.0 -1.6 uracil phosphoribosyltransferase compare
RR42_RS05895 -1.0 -1.4 rhombosortase compare
RR42_RS28085 -1.0 -1.5 alkylphosphonate utilization protein PhnG compare
RR42_RS06240 -1.0 -1.9 tryptophan--tRNA ligase compare
RR42_RS21435 -1.0 -2.6 hypothetical protein compare
RR42_RS21300 -1.0 -4.1 GntR family transcriptional regulator compare
RR42_RS15875 -0.9 -3.8 hypothetical protein compare
RR42_RS00410 -0.9 -2.9 transcriptional regulator compare
RR42_RS00610 -0.9 -3.8 hypothetical protein compare
RR42_RS36785 -0.9 -2.5 hypothetical protein compare
RR42_RS33210 -0.9 -3.6 teichoic acid biosynthesis protein compare
RR42_RS17055 -0.9 -3.9 LuxR family transcriptional regulator compare
RR42_RS22205 -0.9 -2.6 arabinose ABC transporter permease compare
RR42_RS05755 -0.9 -1.4 enoyl-CoA hydratase compare
RR42_RS07565 -0.9 -5.1 transcription accessory protein compare
RR42_RS16675 -0.9 -1.3 hypothetical protein compare
RR42_RS04320 -0.9 -3.8 cell division protein FtsK compare
RR42_RS23575 -0.9 -2.2 flagellar hook-basal body protein FliE compare
RR42_RS04470 -0.9 -2.3 prephenate dehydrogenase compare
RR42_RS20310 -0.9 -0.9 copper-binding protein compare
RR42_RS19735 -0.9 -2.0 hypothetical protein compare
RR42_RS31645 -0.9 -2.4 cysteine dioxygenase compare
RR42_RS35850 -0.9 -1.7 hypothetical protein compare
RR42_RS02860 -0.9 -2.2 hypothetical protein compare
RR42_RS13055 -0.9 -3.3 NAD-dependent protein deacylase compare
RR42_RS32975 -0.9 -1.5 LysR family transcriptional regulator compare
RR42_RS08000 -0.9 -0.8 hypothetical protein compare
RR42_RS00555 -0.9 -4.9 cobyric acid synthase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Serine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Serine across organisms