Experiment set3IT010 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Serine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS36400 +1.4 2.2 hypothetical protein compare
RR42_RS21455 +1.3 3.8 transposase compare
RR42_RS23880 +1.2 1.9 hypothetical protein compare
RR42_RS32670 +1.2 1.3 phenol hydroxylase compare
RR42_RS34680 +1.1 2.0 short-chain dehydrogenase compare
RR42_RS08210 +1.1 1.3 hypothetical protein compare
RR42_RS33145 +1.1 2.5 hypothetical protein compare
RR42_RS04675 +1.1 3.7 alkylhydroperoxidase compare
RR42_RS29610 +1.1 1.7 cytochrome C2 compare
RR42_RS25030 +1.1 2.3 ABC transporter permease compare
RR42_RS02470 +1.1 2.1 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS33620 +1.0 1.6 ABC transporter permease compare
RR42_RS03530 +1.0 1.4 hypothetical protein compare
RR42_RS20370 +1.0 1.6 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS00625 +1.0 1.6 hypothetical protein compare
RR42_RS12130 +0.9 2.2 hypothetical protein compare
RR42_RS26555 +0.9 1.8 tRNA-Met compare
RR42_RS26535 +0.9 2.0 diguanylate cyclase compare
RR42_RS26455 +0.9 1.2 amino acid ABC transporter ATP-binding protein compare
RR42_RS17970 +0.9 2.0 hypothetical protein compare
RR42_RS16510 +0.9 1.8 hypothetical protein compare
RR42_RS30285 +0.9 2.2 amidohydrolase compare
RR42_RS32520 +0.9 2.0 cytochrome C compare
RR42_RS35220 +0.9 1.6 peptide ABC transporter ATP-binding protein compare
RR42_RS23140 +0.9 1.4 peptidylprolyl isomerase compare
RR42_RS33660 +0.9 1.9 dihydrofolate reductase compare
RR42_RS27885 +0.9 1.9 2-keto-4-pentenoate hydratase compare
RR42_RS15525 +0.8 1.0 hypothetical protein compare
RR42_RS05935 +0.8 3.7 membrane protein compare
RR42_RS17335 +0.8 2.2 DeoR family transcriptional regulator compare
RR42_RS21755 +0.8 1.1 shikimate dehydrogenase compare
RR42_RS31715 +0.8 2.9 hypothetical protein compare
RR42_RS12860 +0.8 1.4 pseudouridine synthase compare
RR42_RS32960 +0.8 2.0 2-dehydropantoate 2-reductase compare
RR42_RS22600 +0.8 1.9 heavy metal resistance protein CzcE compare
RR42_RS31750 +0.8 2.5 IclR family transcriptional regulator compare
RR42_RS17355 +0.8 1.2 hypothetical protein compare
RR42_RS28400 +0.8 1.9 CoA-transferase compare
RR42_RS32645 +0.8 1.2 2-keto-4-pentenoate hydratase compare
RR42_RS32735 +0.8 2.8 3-methylcrotonyl-CoA carboxylase compare
RR42_RS12580 +0.8 1.3 phosphate transport regulator compare
RR42_RS31435 +0.7 1.1 hypothetical protein compare
RR42_RS25455 +0.7 1.2 acetyl-CoA acetyltransferase compare
RR42_RS25965 +0.7 3.1 LuxR family transcriptional regulator compare
RR42_RS18745 +0.7 3.3 hypothetical protein compare
RR42_RS32460 +0.7 2.2 LysR family transcriptional regulator compare
RR42_RS14705 +0.7 3.2 multidrug transporter compare
RR42_RS34935 +0.7 1.4 cytochrome C oxidase subunit IV compare
RR42_RS15375 +0.7 1.8 AsnC family transcriptional regulator compare
RR42_RS21460 +0.7 3.5 hypothetical protein compare
RR42_RS33175 +0.7 3.8 membrane protein compare
RR42_RS07900 +0.7 2.4 allantoate amidohydrolase compare
RR42_RS36795 +0.7 2.0 fumarate hydratase compare
RR42_RS19680 +0.7 2.2 hypothetical protein compare
RR42_RS34060 +0.7 1.7 alpha/beta hydrolase compare
RR42_RS03620 +0.7 1.7 lipid A biosynthesis lauroyl acyltransferase compare
RR42_RS21150 +0.7 1.6 hypothetical protein compare
RR42_RS10195 +0.7 1.9 hypothetical protein compare
RR42_RS27320 +0.7 1.3 ferredoxin compare
RR42_RS34715 +0.7 3.2 hypothetical protein compare
RR42_RS15755 +0.7 1.7 acetyltransferase compare
RR42_RS07815 +0.7 2.8 glutamine ABC transporter ATP-binding protein compare
RR42_RS22745 +0.7 2.1 phosphoribosylglycinamide formyltransferase compare
RR42_RS01315 +0.6 1.4 GNAT family acetyltransferase compare
RR42_RS20075 +0.6 0.7 hypothetical protein compare
RR42_RS27910 +0.6 1.5 Crp/Fnr family transcriptional regulator compare
RR42_RS35445 +0.6 3.1 ArsR family transcriptional regulator compare
RR42_RS14845 +0.6 1.7 MarR family transcriptional regulator compare
RR42_RS27705 +0.6 1.9 NAD-dependent deacetylase compare
RR42_RS37160 +0.6 3.0 DNA-binding protein compare
RR42_RS04980 +0.6 1.3 hypothetical protein compare
RR42_RS33650 +0.6 1.4 IclR family transcriptional regulator compare
RR42_RS06470 +0.6 2.0 hypothetical protein compare
RR42_RS01090 +0.6 3.3 histidine kinase compare
RR42_RS28290 +0.6 1.5 DNA-binding protein compare
RR42_RS14520 +0.6 1.3 mobilization protein compare
RR42_RS31820 +0.6 1.9 short-chain dehydrogenase compare
RR42_RS23910 +0.6 2.3 hypothetical protein compare
RR42_RS20065 +0.6 2.3 glycine cleavage system protein H compare
RR42_RS10950 +0.6 1.2 GCN5 family acetyltransferase compare
RR42_RS04055 +0.6 1.3 hypothetical protein compare
RR42_RS08085 +0.6 1.5 hypothetical protein compare
RR42_RS32570 +0.6 1.8 Vanillate O-demethylase oxidoreductase compare
RR42_RS16555 +0.6 1.8 cysteine hydrolase compare
RR42_RS05115 +0.6 1.1 LysR family transcriptional regulator compare
RR42_RS05385 +0.6 1.4 LOG family protein compare
RR42_RS31470 +0.6 1.9 hypothetical protein compare
RR42_RS37055 +0.6 1.1 hypothetical protein compare
RR42_RS17665 +0.6 0.9 chorismate lyase compare
RR42_RS30675 +0.6 2.0 hypothetical protein compare
RR42_RS31425 +0.6 1.2 chloroperoxidase compare
RR42_RS16225 +0.6 3.4 cytosol aminopeptidase compare
RR42_RS06870 +0.6 1.0 hypothetical protein compare
RR42_RS32090 +0.6 1.6 hypothetical protein compare
RR42_RS16575 +0.6 1.9 acyl-CoA dehydrogenase compare
RR42_RS06860 +0.6 0.9 hypothetical protein compare
RR42_RS22295 +0.6 0.7 methionine sulfoxide reductase B compare
RR42_RS08320 +0.6 1.4 hypothetical protein compare
RR42_RS35440 +0.6 2.9 MBL fold metallo-hydrolase compare
RR42_RS01210 +0.6 1.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
RR42_RS12615 +0.5 1.7 LexA family transcriptional regulator compare
RR42_RS05650 +0.5 2.8 urea ABC transporter ATP-binding protein compare
RR42_RS01450 +0.5 2.1 hypothetical protein compare
RR42_RS20810 +0.5 1.2 hypothetical protein compare
RR42_RS31385 +0.5 3.3 GntR family transcriptional regulator compare
RR42_RS28110 +0.5 1.5 phosphonate ABC transporter ATPase compare
RR42_RS33485 +0.5 1.5 Fe-S oxidoreductase compare
RR42_RS27500 +0.5 1.5 hypothetical protein compare
RR42_RS13805 +0.5 2.0 NTP pyrophosphohydrolase compare
RR42_RS33910 +0.5 1.0 LysR family transcriptional regulator compare
RR42_RS07995 +0.5 1.1 hypothetical protein compare
RR42_RS34570 +0.5 0.8 hypothetical protein compare
RR42_RS28695 +0.5 0.9 hypothetical protein compare
RR42_RS21180 +0.5 1.6 GNAT family acetyltransferase compare
RR42_RS02540 +0.5 1.9 taurine ABC transporter permease compare
RR42_RS10515 +0.5 1.5 fumarylacetoacetate hydrolase compare
RR42_RS36105 +0.5 1.5 MarR family transcriptional regulator compare
RR42_RS13825 +0.5 2.3 hypothetical protein compare
RR42_RS01960 +0.5 2.2 transcriptional regulator compare
RR42_RS15770 +0.5 3.0 hypothetical protein compare
RR42_RS28365 +0.5 2.7 GntR family transcriptional regulator compare
RR42_RS23125 +0.5 1.0 hypothetical protein compare
RR42_RS27290 +0.5 1.4 hypothetical protein compare
RR42_RS13465 +0.5 1.5 phosphate transporter permease subunit PstC compare
RR42_RS36610 +0.5 1.5 host specificity protein compare
RR42_RS35240 +0.5 1.2 acyl-CoA dehydrogenase compare
RR42_RS16375 +0.5 2.1 short-chain dehydrogenase compare
RR42_RS22710 +0.5 1.7 short-chain dehydrogenase compare
RR42_RS31550 +0.5 1.8 RND transporter compare
RR42_RS33450 +0.5 1.5 alanine racemase compare
RR42_RS02030 +0.5 1.0 membrane protein compare
RR42_RS34705 +0.5 2.1 hypothetical protein compare
RR42_RS32720 +0.5 1.9 glyoxalase compare
RR42_RS30435 +0.5 1.6 twin-arginine translocation pathway signal protein compare
RR42_RS31040 +0.5 2.5 hypothetical protein compare
RR42_RS28490 +0.5 2.2 hypothetical protein compare
RR42_RS34155 +0.5 1.5 hypothetical protein compare
RR42_RS01605 +0.5 2.2 hydrolase compare
RR42_RS17730 +0.5 1.3 hypothetical protein compare
RR42_RS08615 +0.5 1.3 membrane protein compare
RR42_RS25840 +0.5 2.4 ArsR family transcriptional regulator compare
RR42_RS04415 +0.5 3.4 ABC transporter compare
RR42_RS00280 +0.5 1.8 glutathione peroxidase compare
RR42_RS26945 +0.5 2.8 2-hydroxy-3-oxopropionate reductase compare
RR42_RS09565 +0.5 1.3 hypothetical protein compare
RR42_RS17235 +0.5 2.6 poly(A) polymerase compare
RR42_RS09375 +0.5 0.6 taurine dioxygenase compare
RR42_RS08550 +0.5 1.4 tail fiber protein compare
RR42_RS35455 +0.5 2.4 membrane protein compare
RR42_RS08720 +0.5 1.4 alpha/beta hydrolase compare
RR42_RS13260 +0.5 2.0 CoA-transferase compare
RR42_RS00300 +0.5 1.3 kinase compare
RR42_RS26565 +0.5 2.3 5'-3' exonuclease compare
RR42_RS24080 +0.5 2.3 hypothetical protein compare
RR42_RS09245 +0.5 1.3 hypothetical protein compare
RR42_RS12290 +0.5 2.0 alkanesulfonate monooxygenase compare
RR42_RS00095 +0.5 2.6 hypothetical protein compare
RR42_RS35720 +0.5 1.4 flagellar basal body rod protein FlgC compare
RR42_RS01485 +0.5 1.3 phosphonate transporter compare
RR42_RS33040 +0.5 1.4 hypothetical protein compare
RR42_RS35275 +0.5 2.0 membrane protein compare
RR42_RS00990 +0.5 1.7 GntR family transcriptional regulator compare
RR42_RS08260 +0.5 0.6 hypothetical protein compare
RR42_RS15765 +0.5 2.6 hypothetical protein compare
RR42_RS20675 +0.5 1.4 AsnC family transcriptional regulator compare
RR42_RS22185 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS07125 +0.5 0.4 hypothetical protein compare
RR42_RS33975 +0.5 2.2 hypothetical protein compare
RR42_RS09630 +0.5 0.9 hypothetical protein compare
RR42_RS01600 +0.5 2.0 methylmalonyl-CoA mutase compare
RR42_RS03185 +0.5 0.9 branched-chain amino acid permease compare
RR42_RS25675 +0.5 2.0 hypothetical protein compare
RR42_RS15610 +0.5 1.7 cupin compare
RR42_RS27080 +0.5 1.0 hypothetical protein compare
RR42_RS23220 +0.5 1.5 MarR family transcriptional regulator compare
RR42_RS23405 +0.5 2.2 hypothetical protein compare
RR42_RS18725 +0.5 1.1 hypothetical protein compare
RR42_RS04145 +0.5 0.4 peptidase A24 compare
RR42_RS28475 +0.4 2.9 dioxygenase compare
RR42_RS34665 +0.4 2.2 membrane protein compare
RR42_RS25600 +0.4 1.3 AraC family transcriptional regulator compare
RR42_RS32550 +0.4 1.7 taurine dioxygenase compare
RR42_RS20395 +0.4 2.3 membrane protein compare
RR42_RS26540 +0.4 0.7 3-phosphoglycerate dehydrogenase compare
RR42_RS12945 +0.4 1.7 membrane protein compare
RR42_RS04060 +0.4 0.8 hypothetical protein compare
RR42_RS20695 +0.4 1.6 TetR family transcriptional regulator compare
RR42_RS15180 +0.4 1.2 hypothetical protein compare
RR42_RS09310 +0.4 1.0 IclR family transcriptional regulator compare
RR42_RS27690 +0.4 2.5 RND transporter compare
RR42_RS34205 +0.4 1.6 hypothetical protein compare
RR42_RS03655 +0.4 1.9 hypothetical protein compare
RR42_RS06315 +0.4 1.9 RNA methyltransferase compare
RR42_RS02760 +0.4 1.8 branched-chain amino acid ABC transporter permease compare
RR42_RS28910 +0.4 1.1 XRE family transcriptional regulator compare
RR42_RS31830 +0.4 0.9 short-chain dehydrogenase compare
RR42_RS03640 +0.4 2.0 hypothetical protein compare
RR42_RS20950 +0.4 2.5 multidrug MFS transporter compare
RR42_RS01190 +0.4 2.0 peptidase M48 compare
RR42_RS31330 +0.4 0.5 LysR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Serine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Serine across organisms