Experiment set3IT010 for Ralstonia sp. UNC404CL21Col

Compare to:

rhizosphere sample 1; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -5.3 -3.7 NUDIX domain-containing protein compare
ABZR87_RS02160 -4.9 -3.4 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS08695 -4.8 -9.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS02640 -4.8 -8.6 diaminopimelate decarboxylase compare
ABZR87_RS08630 -4.5 -3.1 dihydroorotase compare
ABZR87_RS16270 -4.1 -1.7 cold-shock protein compare
ABZR87_RS00340 -4.0 -2.8 50S ribosomal protein L33 compare
ABZR87_RS14505 -3.8 -4.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS14500 -3.8 -9.9 tryptophan synthase subunit beta compare
ABZR87_RS14535 -3.8 -2.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS13790 -3.8 -4.5 chorismate synthase compare
ABZR87_RS02145 -3.8 -2.6 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS20370 -3.7 -1.5 ABC transporter ATP-binding protein compare
ABZR87_RS21815 -3.6 -1.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS08990 -3.6 -2.5 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS02140 -3.6 -13.8 anthranilate synthase component I compare
ABZR87_RS14115 -3.6 -3.1 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS22920 -3.6 -3.5 phosphogluconate dehydratase compare
ABZR87_RS02595 -3.5 -9.0 shikimate kinase compare
ABZR87_RS01450 -3.5 -3.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS09450 -3.5 -6.7 prephenate dehydratase compare
ABZR87_RS20680 -3.5 -3.2 SDR family oxidoreductase compare
ABZR87_RS01810 -3.5 -3.4 glutamate 5-kinase compare
ABZR87_RS03420 -3.4 -1.4 type II secretion system minor pseudopilin GspI compare
ABZR87_RS09465 -3.4 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS05200 -3.3 -13.8 homoserine O-acetyltransferase compare
ABZR87_RS13250 -3.3 -2.8 phosphoserine phosphatase SerB compare
ABZR87_RS07380 -3.3 -8.3 FAD/FMN-binding oxidoreductase compare
ABZR87_RS22970 -3.3 -10.2 cystathionine gamma-synthase family protein compare
ABZR87_RS20160 -3.3 -3.2 OmpA family protein compare
ABZR87_RS14490 -3.3 -5.5 tryptophan synthase subunit alpha compare
ABZR87_RS14540 -3.3 -5.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14530 -3.2 -3.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS02155 -3.2 -7.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS20880 -3.2 -6.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS12965 -3.2 -4.4 tail protein X compare
ABZR87_RS16845 -3.1 -1.3 hypothetical protein compare
ABZR87_RS00625 -3.1 -1.8 hypothetical protein compare
ABZR87_RS02570 -3.0 -16.8 glutamate synthase-related protein compare
ABZR87_RS02655 -3.0 -8.4 anti-sigma factor compare
ABZR87_RS10550 -3.0 -2.1 outer membrane protein assembly factor BamC compare
ABZR87_RS00195 -2.9 -4.6 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS09445 -2.9 -7.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS01700 -2.9 -1.7 DUF2147 domain-containing protein compare
ABZR87_RS05100 -2.9 -3.4 RNA polymerase-binding protein DksA compare
ABZR87_RS01035 -2.9 -4.8 histidine utilization repressor compare
ABZR87_RS21285 -2.8 -2.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS08970 -2.7 -4.5 protein TolQ compare
ABZR87_RS00210 -2.7 -6.9 nitrite/sulfite reductase compare
ABZR87_RS05305 -2.7 -8.8 TetR family transcriptional regulator compare
ABZR87_RS07360 -2.6 -8.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS12120 -2.6 -1.5 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS02550 -2.6 -2.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS00200 -2.6 -3.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS22325 -2.5 -3.3 H-NS histone family protein compare
ABZR87_RS02590 -2.5 -6.8 3-dehydroquinate synthase compare
ABZR87_RS00435 -2.5 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS06400 -2.4 -5.4 response regulator transcription factor compare
ABZR87_RS08980 -2.4 -2.9 cell envelope integrity protein TolA compare
ABZR87_RS13705 -2.4 -1.6 integration host factor subunit alpha compare
ABZR87_RS20875 -2.3 -5.3 LysR family transcriptional regulator compare
ABZR87_RS19675 -2.3 -1.3 cold-shock protein compare
ABZR87_RS22910 -2.3 -2.1 6-phosphogluconolactonase compare
ABZR87_RS02445 -2.2 -2.6 Sec-independent protein translocase protein TatB compare
ABZR87_RS15320 -2.2 -2.4 DUF969 domain-containing protein compare
ABZR87_RS00220 -2.2 -8.2 CysB family HTH-type transcriptional regulator compare
ABZR87_RS06455 -2.2 -3.0 IclR family transcriptional regulator compare
ABZR87_RS15930 -2.2 -8.7 sigma-54-dependent Fis family transcriptional regulator compare
ABZR87_RS13475 -2.2 -4.4 PAS domain S-box protein compare
ABZR87_RS06715 -2.2 -3.9 PTS sugar transporter subunit IIA compare
ABZR87_RS21950 -2.2 -5.1 hypothetical protein compare
ABZR87_RS11245 -2.1 -3.6 translational GTPase TypA compare
ABZR87_RS10085 -2.1 -1.5 Rne/Rng family ribonuclease compare
ABZR87_RS14190 -2.1 -8.2 DUF2589 domain-containing protein compare
ABZR87_RS02565 -2.1 -4.1 glutamate synthase subunit beta compare
ABZR87_RS16400 -2.1 -2.6 LysR family transcriptional regulator compare
ABZR87_RS09515 -2.1 -1.4 cysteine synthase CysM compare
ABZR87_RS08985 -2.1 -7.1 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS06705 -2.1 -9.3 glutamate--cysteine ligase compare
ABZR87_RS04270 -2.1 -3.9 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS01110 -2.1 -4.6 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS08795 -2.1 -2.5 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS15715 -2.0 -6.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS16185 -2.0 -1.4 dCTP deaminase compare
ABZR87_RS04865 -2.0 -1.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS09895 -2.0 -1.4 DUF1841 family protein compare
ABZR87_RS02375 -2.0 -6.6 cytochrome c1 compare
ABZR87_RS00190 -2.0 -7.8 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS07050 -2.0 -1.3 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS14680 -2.0 -1.1 SDR family oxidoreductase compare
ABZR87_RS16170 -2.0 -1.4 argininosuccinate lyase compare
ABZR87_RS07510 -1.9 -3.0 LysR family transcriptional regulator compare
ABZR87_RS05990 -1.9 -3.0 AraC family transcriptional regulator compare
ABZR87_RS00185 -1.9 -3.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS12345 -1.9 -1.1 dethiobiotin synthase compare
ABZR87_RS04785 -1.9 -6.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS10170 -1.9 -2.8 RseA family anti-sigma factor compare
ABZR87_RS13290 -1.9 -3.7 3-ketoacyl-ACP reductase compare
ABZR87_RS02380 -1.8 -7.1 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS14510 -1.8 -2.5 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS05965 -1.8 -1.6 hemerythrin domain-containing protein compare
ABZR87_RS15680 -1.8 -6.5 DNA polymerase I compare
ABZR87_RS16960 -1.8 -1.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS00205 -1.8 -2.6 DUF934 domain-containing protein compare
ABZR87_RS04945 -1.8 -1.7 DUF4390 domain-containing protein compare
ABZR87_RS11330 -1.8 -2.4 transcriptional repressor LexA compare
ABZR87_RS15990 -1.8 -5.4 aldehyde dehydrogenase family protein compare
ABZR87_RS05065 -1.8 -1.2 tyrosine recombinase XerC compare
ABZR87_RS14415 -1.8 -0.9 hemin uptake protein HemP compare
ABZR87_RS13285 -1.8 -6.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS21375 -1.7 -2.0 DUF6566 family protein compare
ABZR87_RS01745 -1.7 -3.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS17145 -1.7 -8.0 AMP nucleosidase compare
ABZR87_RS02385 -1.7 -3.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS06350 -1.7 -5.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS04565 -1.7 -1.4 PaaI family thioesterase compare
ABZR87_RS04105 -1.6 -2.9 ATP synthase subunit I compare
ABZR87_RS23445 -1.6 -1.6 malonate decarboxylase subunit delta compare
ABZR87_RS13300 -1.6 -2.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07035 -1.6 -2.9 RNase adapter RapZ compare
ABZR87_RS11125 -1.6 -4.1 cell division protein ZapE compare
ABZR87_RS08400 -1.6 -1.8 glycine zipper 2TM domain-containing protein compare
ABZR87_RS06845 -1.6 -5.8 heme o synthase compare
ABZR87_RS00795 -1.6 -1.1 site-specific tyrosine recombinase XerD compare
ABZR87_RS04975 -1.6 -1.7 peptide deformylase compare
ABZR87_RS05130 -1.6 -0.9 CsbD family protein compare
ABZR87_RS07055 -1.6 -5.9 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS02850 -1.5 -1.1 elongation factor Tu compare
ABZR87_RS02220 -1.5 -5.5 redox-regulated ATPase YchF compare
ABZR87_RS21940 -1.5 -0.9 hypothetical protein compare
ABZR87_RS01885 -1.5 -1.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS06315 -1.5 -8.2 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS12785 -1.5 -2.5 endopeptidase La compare
ABZR87_RS07005 -1.5 -1.4 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS09820 -1.5 -1.2 RidA family protein compare
ABZR87_RS17695 -1.5 -2.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS11925 -1.5 -6.8 phosphoenolpyruvate synthase compare
ABZR87_RS12970 -1.5 -3.1 putative holin compare
ABZR87_RS07470 -1.5 -3.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03850 -1.4 -2.6 ureidoglycolate lyase compare
ABZR87_RS12950 -1.4 -4.3 phage major capsid protein, P2 family compare
ABZR87_RS01615 -1.4 -0.7 RNB domain-containing ribonuclease compare
ABZR87_RS05570 -1.4 -3.9 lysophospholipid acyltransferase family protein compare
ABZR87_RS05060 -1.4 -2.3 DUF484 family protein compare
ABZR87_RS03450 -1.4 -7.5 type II secretion system secretin GspD compare
ABZR87_RS14980 -1.4 -2.1 alpha/beta fold hydrolase compare
ABZR87_RS01980 -1.4 -1.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS21990 -1.4 -2.8 hypothetical protein compare
ABZR87_RS17650 -1.4 -4.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03495 -1.4 -5.1 exodeoxyribonuclease I compare
ABZR87_RS03430 -1.4 -5.9 type II secretion system minor pseudopilin GspK compare
ABZR87_RS11340 -1.4 -4.3 asparaginase compare
ABZR87_RS11440 -1.4 -4.0 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS03425 -1.4 -4.1 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS01685 -1.4 -2.9 histone H1-like DNA-binding protein compare
ABZR87_RS16125 -1.4 -4.2 heme biosynthesis protein HemY compare
ABZR87_RS03440 -1.4 -4.4 type II secretion system protein GspM compare
ABZR87_RS01280 -1.4 -2.3 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS14965 -1.3 -2.0 DUF3619 family protein compare
ABZR87_RS22690 -1.3 -1.6 XRE family transcriptional regulator compare
ABZR87_RS11050 -1.3 -2.6 rhodanese-like domain-containing protein compare
ABZR87_RS02075 -1.3 -1.6 23S ribosomal RNA compare
ABZR87_RS21700 -1.3 -1.5 hypothetical protein compare
ABZR87_RS03410 -1.3 -4.2 type II secretion system major pseudopilin GspG compare
ABZR87_RS14380 -1.3 -3.5 glutamate racemase compare
ABZR87_RS20155 -1.3 -2.7 type VI secretion system-associated protein TagF compare
ABZR87_RS02540 -1.3 -2.6 VacJ family lipoprotein compare
ABZR87_RS06770 -1.3 -3.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS22035 -1.3 -1.7 hypothetical protein compare
ABZR87_RS11460 -1.3 -2.7 gephyrin-like molybdotransferase Glp compare
ABZR87_RS09625 -1.3 -4.2 CobD/CbiB family protein compare
ABZR87_RS10175 -1.3 -3.3 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS17340 -1.3 -1.5 MarR family transcriptional regulator compare
ABZR87_RS17310 -1.3 -4.2 PadR family transcriptional regulator compare
ABZR87_RS12150 -1.3 -2.1 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS16735 -1.3 -7.0 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS08205 -1.3 -1.0 hypothetical protein compare
ABZR87_RS00745 -1.2 -1.2 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS23215 -1.2 -3.2 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS00715 -1.2 -3.1 MotA/TolQ/ExbB proton channel family protein compare
ABZR87_RS16060 -1.2 -4.6 DNA translocase FtsK compare
ABZR87_RS20140 -1.2 -1.6 PAAR domain-containing protein compare
ABZR87_RS05205 -1.2 -2.8 methionine biosynthesis protein MetW compare
ABZR87_RS11185 -1.2 -4.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS04880 -1.2 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS14420 -1.2 -3.7 heme-binding protein compare
ABZR87_RS18910 -1.2 -1.5 DUF2239 family protein compare
ABZR87_RS20145 -1.2 -2.4 hypothetical protein compare
ABZR87_RS06710 -1.2 -6.5 glutathione synthase compare
ABZR87_RS07815 -1.2 -2.0 MaoC/PaaZ C-terminal domain-containing protein compare
ABZR87_RS14780 -1.2 -1.8 MaoC family dehydratase compare
ABZR87_RS12790 -1.2 -0.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS03865 -1.2 -4.3 GntR family transcriptional regulator compare
ABZR87_RS07605 -1.2 -1.7 D-aminoacyl-tRNA deacylase compare
ABZR87_RS05645 -1.2 -2.5 SDR family oxidoreductase compare
ABZR87_RS18440 -1.2 -1.2 VOC family protein compare
ABZR87_RS09000 -1.2 -3.7 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS16860 -1.2 -1.1 response regulator compare
ABZR87_RS14575 -1.2 -1.8 GntR family transcriptional regulator compare
ABZR87_RS00865 -1.2 -1.1 VTT domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment