Experiment set3IT009 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1307 -3.2 -2.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_327 -2.8 -3.2 hypothetical protein compare
Pf1N1B4_769 -2.4 -6.7 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3768 -2.1 -3.3 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2004 -2.1 -2.8 putative membrane protein compare
Pf1N1B4_722 -2.0 -2.2 SAM-dependent methyltransferases compare
Pf1N1B4_4143 -1.9 -3.5 hypothetical protein compare
Pf1N1B4_1508 -1.9 -3.0 Lysophospholipid acyltransferase compare
Pf1N1B4_1906 -1.8 -4.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4038 -1.7 -2.5 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_5720 -1.7 -3.2 hypothetical protein compare
Pf1N1B4_4569 -1.6 -2.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_3917 -1.5 -3.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_5224 -1.5 -2.5 tRNA-Arg-CCT compare
Pf1N1B4_350 -1.4 -6.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2247 -1.4 -2.9 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_5725 -1.4 -2.2 High-affinity iron permease compare
Pf1N1B4_5777 -1.4 -2.6 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_3467 -1.4 -2.3 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_4139 -1.3 -2.0 Transcriptional regulator, MerR family compare
Pf1N1B4_3143 -1.3 -2.7 RecA protein compare
Pf1N1B4_731 -1.3 -2.1 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_4419 -1.3 -2.2 Organosulfonate utilization protein SsuF compare
Pf1N1B4_1749 -1.3 -1.3 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_2106 -1.3 -2.7 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3833 -1.3 -6.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4035 -1.3 -2.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_5768 -1.3 -2.8 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_740 -1.2 -2.2 Leucyl-tRNA synthetase compare
Pf1N1B4_4040 -1.2 -2.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_5690 -1.2 -3.5 Putative TEGT family carrier/transport protein compare
Pf1N1B4_175 -1.2 -2.2 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4029 -1.2 -2.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_875 -1.2 -1.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2150 -1.2 -2.0 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_4715 -1.2 -1.3 Transcriptional regulator compare
Pf1N1B4_4253 -1.2 -2.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3074 -1.2 -1.5 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_399 -1.2 -2.1 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_683 -1.2 -3.0 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1234 -1.1 -3.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_5278 -1.1 -1.4 hypothetical protein compare
Pf1N1B4_164 -1.1 -1.7 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_567 -1.1 -2.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_5917 -1.1 -1.6 Multimeric flavodoxin WrbA compare
Pf1N1B4_3184 -1.1 -2.1 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_2036 -1.1 -2.7 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_1403 -1.1 -4.8 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4533 -1.1 -2.2 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_5460 -1.1 -2.1 TolA protein compare
Pf1N1B4_5577 -1.1 -1.9 twitching motility protein PilG compare
Pf1N1B4_1870 -1.1 -2.4 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1568 -1.1 -2.9 Twin-arginine translocation protein TatB compare
Pf1N1B4_4636 -1.0 -1.8 TPR domain protein in aerotolerance operon compare
Pf1N1B4_2227 -1.0 -2.0 FIG019278: hypothetical protein compare
Pf1N1B4_2105 -1.0 -1.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1617 -1.0 -4.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2209 -1.0 -5.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3504 -1.0 -2.6 Two-component sensor histidine kinase PfeS, enterobactin compare
Pf1N1B4_3498 -1.0 -1.9 FIG00953240: hypothetical protein compare
Pf1N1B4_749 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_228 -1.0 -2.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_4051 -1.0 -2.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_3751 -1.0 -1.9 FIG00953060: hypothetical protein compare
Pf1N1B4_1212 -1.0 -2.8 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_4132 -1.0 -1.9 Mobile element protein compare
Pf1N1B4_4957 -1.0 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_2417 -1.0 -1.9 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_2427 -1.0 -1.7 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf1N1B4_526 -1.0 -2.3 Undecaprenyl pyrophosphate synthase compare
Pf1N1B4_652 -1.0 -5.8 Sensory box histidine kinase compare
Pf1N1B4_5425 -1.0 -1.9 DNA-binding protein HU-beta compare
Pf1N1B4_2114 -1.0 -4.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_5916 -0.9 -2.4 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_4931 -0.9 -1.8 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_5463 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_4960 -0.9 -1.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_1827 -0.9 -2.8 FIG00953482: hypothetical protein compare
Pf1N1B4_313 -0.9 -1.8 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Pf1N1B4_5483 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_441 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_5112 -0.9 -2.2 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_5383 -0.9 -5.5 hypothetical protein compare
Pf1N1B4_5371 -0.9 -0.9 hypothetical protein compare
Pf1N1B4_3591 -0.9 -4.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_5835 -0.9 -2.4 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_2075 -0.9 -2.2 ABC-type antimicrobial peptide transport system, permease component compare
Pf1N1B4_2684 -0.9 -1.5 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_5269 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_4777 -0.9 -2.0 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_3446 -0.9 -1.5 Putative GTPases (G3E family) compare
Pf1N1B4_3605 -0.9 -1.6 Flagellar motor switch protein FliG compare
Pf1N1B4_3812 -0.9 -4.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_5386 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_1472 -0.9 -1.2 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_578 -0.8 -1.9 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_5105 -0.8 -1.6 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_3362 -0.8 -2.3 Multidrug resistance protein B compare
Pf1N1B4_4368 -0.8 -2.4 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_1716 -0.8 -2.0 FIG00953394: hypothetical protein compare
Pf1N1B4_5659 -0.8 -5.6 NfuA Fe-S protein maturation compare
Pf1N1B4_876 -0.8 -2.3 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_612 -0.8 -2.1 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_1328 -0.8 -1.9 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2878 -0.8 -4.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2384 -0.8 -5.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_348 -0.8 -2.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_5284 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_866 -0.8 -1.4 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_5682 -0.8 -1.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_1365 -0.8 -2.1 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_1993 -0.8 -1.2 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4867 -0.8 -2.2 FIG00464907: hypothetical protein compare
Pf1N1B4_890 -0.8 -1.8 DNA recombination and repair protein RecO compare
Pf1N1B4_4857 -0.8 -3.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3036 -0.8 -2.0 Chemotaxis signal transduction protein compare
Pf1N1B4_5949 -0.8 -1.5 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_448 -0.8 -1.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_440 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_1830 -0.8 -3.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1340 -0.8 -1.5 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_5709 -0.8 -2.1 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_3809 -0.8 -2.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_656 -0.8 -3.8 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_2857 -0.8 -2.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_4030 -0.8 -1.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1462 -0.7 -5.6 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_4349 -0.7 -2.2 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_5531 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_1159 -0.7 -1.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_4250 -0.7 -1.5 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_5611 -0.7 -1.6 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_1008 -0.7 -1.0 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_5779 -0.7 -1.7 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_5995 -0.7 -1.1 Transporter, MFS superfamily compare
Pf1N1B4_2085 -0.7 -1.4 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_1235 -0.7 -3.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_3725 -0.7 -2.5 Sensory box histidine kinase/response regulator compare
Pf1N1B4_493 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_198 -0.7 -1.5 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_6038 -0.7 -2.2 FIG00953874: hypothetical protein compare
Pf1N1B4_3985 -0.7 -1.4 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_5706 -0.7 -2.1 Fumarylacetoacetate hydrolase family protein compare
Pf1N1B4_3871 -0.7 -5.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3980 -0.7 -1.7 Transcriptional regulator, HxlR family compare
Pf1N1B4_216 -0.7 -2.0 Sigma factor PvdS, controling pyoverdin biosynthesis compare
Pf1N1B4_5507 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_4039 -0.7 -3.0 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_437 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_2368 -0.7 -2.0 Malonate transporter, MadL subunit compare
Pf1N1B4_4234 -0.7 -2.4 putative transport protein compare
Pf1N1B4_2486 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_3328 -0.7 -1.3 Rhodanese-like domain protein compare
Pf1N1B4_1004 -0.7 -2.1 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) compare
Pf1N1B4_5865 -0.7 -2.6 FIG00960493: hypothetical protein compare
Pf1N1B4_2465 -0.7 -1.3 Two-component response regulator CreB compare
Pf1N1B4_4393 -0.7 -1.4 Ferredoxin reductase compare
Pf1N1B4_2488 -0.7 -3.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1504 -0.7 -1.3 Acyl carrier protein compare
Pf1N1B4_2492 -0.7 -2.3 FIG00954771: hypothetical protein compare
Pf1N1B4_2835 -0.7 -2.5 hypothetical protein compare
Pf1N1B4_2948 -0.7 -1.3 FIG00954698: hypothetical protein compare
Pf1N1B4_3212 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_1315 -0.7 -3.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_5370 -0.7 -0.7 hypothetical protein compare
Pf1N1B4_5844 -0.7 -2.1 Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein compare
Pf1N1B4_1528 -0.7 -1.6 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_747 -0.7 -2.5 Bacterioferritin-associated ferredoxin compare
Pf1N1B4_1257 -0.7 -2.2 Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase compare
Pf1N1B4_4140 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_403 -0.7 -1.2 FIG00965925: hypothetical protein compare
Pf1N1B4_3779 -0.7 -1.6 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_4659 -0.7 -1.4 Putative outer membrane lipoprotein compare
Pf1N1B4_4028 -0.7 -2.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3508 -0.7 -2.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_1211 -0.6 -2.4 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_581 -0.6 -2.5 membrane protein, putative compare
Pf1N1B4_1247 -0.6 -1.5 transcriptional regulator, MerR family compare
Pf1N1B4_1154 -0.6 -1.8 FIG00957702: hypothetical protein compare
Pf1N1B4_1399 -0.6 -2.0 FIG003573: hypothetical protein compare
Pf1N1B4_2157 -0.6 -2.8 FIG00963784: hypothetical protein compare
Pf1N1B4_3531 -0.6 -1.5 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_4376 -0.6 -1.5 probable transmembrane protein compare
Pf1N1B4_2228 -0.6 -2.0 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_3625 -0.6 -1.7 Flagellar synthesis regulator FleN compare
Pf1N1B4_2195 -0.6 -1.3 Small-conductance mechanosensitive channel compare
Pf1N1B4_2718 -0.6 -2.5 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf1N1B4_669 -0.6 -1.6 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf1N1B4_3685 -0.6 -2.2 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_4317 -0.6 -1.2 DNA/RNA non-specific endonuclease compare
Pf1N1B4_4273 -0.6 -2.4 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf1N1B4_4966 -0.6 -2.3 Transcriptional regulator, LysR family compare
Pf1N1B4_4358 -0.6 -1.3 Acetyltransferase, GNAT family compare
Pf1N1B4_1762 -0.6 -1.8 FIG00957387: hypothetical protein compare
Pf1N1B4_3840 -0.6 -2.1 Response regulator NasT compare
Pf1N1B4_5812 -0.6 -1.5 FIG00955248: hypothetical protein compare
Pf1N1B4_4053 -0.6 -2.3 Cold shock protein CspD compare
Pf1N1B4_4563 -0.6 -1.3 Sulfate transporter compare
Pf1N1B4_4462 -0.6 -1.5 LysR family transcriptional regulator YbhD compare
Pf1N1B4_5187 -0.6 -0.7 5S RNA compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments