Experiment set3IT009 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_2381 +2.3 16.0 Protein yceI precursor compare
Pf1N1B4_2380 +2.3 17.9 Cytochrome B561 compare
Pf1N1B4_5926 +1.6 12.2 hypothetical protein compare
Pf1N1B4_5925 +1.6 9.5 hypothetical protein compare
Pf1N1B4_4969 +1.3 3.1 FIG00956189: hypothetical protein compare
Pf1N1B4_608 +1.3 3.8 Heme oxygenase HemO, associated with heme uptake compare
Pf1N1B4_3981 +1.2 3.1 Predicted carboxypeptidase compare
Pf1N1B4_3413 +1.2 2.1 Transcriptional regulator, LysR family compare
Pf1N1B4_4603 +1.2 2.0 hypothetical protein compare
Pf1N1B4_5560 +1.2 2.2 hypothetical protein compare
Pf1N1B4_5292 +1.1 1.8 hypothetical protein compare
Pf1N1B4_2958 +1.1 1.7 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_2314 +1.1 2.5 FIG028932: hypothetical protein compare
Pf1N1B4_93 +1.0 3.2 Phenazine biosynthesis protein PhzF like compare
Pf1N1B4_5014 +1.0 2.0 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_4828 +0.9 2.9 hypothetical protein compare
Pf1N1B4_4123 +0.9 1.8 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_3023 +0.9 2.0 hypothetical protein compare
Pf1N1B4_4458 +0.9 3.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_538 +0.9 1.9 hypothetical protein compare
Pf1N1B4_4455 +0.9 2.2 FIG00953528: hypothetical protein compare
Pf1N1B4_118 +0.9 2.3 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_5924 +0.9 4.9 hypothetical protein compare
Pf1N1B4_5763 +0.9 1.7 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_1446 +0.9 3.2 Predicted hydroxymethylpyrimidine transporter CytX compare
Pf1N1B4_5077 +0.9 2.1 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_3637 +0.9 2.5 FlhB domain protein compare
Pf1N1B4_4470 +0.8 1.3 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_5029 +0.8 2.5 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_4336 +0.8 2.4 FMN-dependent NADH-azoreductase compare
Pf1N1B4_4438 +0.8 2.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_1336 +0.8 1.3 Putative multicopper oxidases compare
Pf1N1B4_5306 +0.8 2.3 hypothetical protein compare
Pf1N1B4_202 +0.8 3.1 ABC transporter in pyoverdin gene cluster, permease component compare
Pf1N1B4_81 +0.8 1.8 Putative sulfate permease compare
Pf1N1B4_2433 +0.8 2.3 FIG00953108: hypothetical protein compare
Pf1N1B4_1724 +0.8 2.9 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_4481 +0.8 1.7 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_1517 +0.8 2.9 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf1N1B4_583 +0.8 2.0 FIG00957748: hypothetical protein compare
Pf1N1B4_2734 +0.8 1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_2739 +0.8 2.0 acetyltransferase, GNAT family compare
Pf1N1B4_2021 +0.8 1.4 hypothetical protein compare
Pf1N1B4_4436 +0.8 2.1 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_564 +0.8 2.2 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_3966 +0.7 2.1 serine/threonine protein kinase compare
Pf1N1B4_4604 +0.7 2.4 FMN reductase, NADPH-dependent compare
Pf1N1B4_4568 +0.7 1.6 FIG00793915: hypothetical protein compare
Pf1N1B4_131 +0.7 1.7 hypothetical protein compare
Pf1N1B4_165 +0.7 2.1 FIG00638667: hypothetical protein compare
Pf1N1B4_3817 +0.7 3.2 FIG008443: hypothetical protein compare
Pf1N1B4_4474 +0.7 1.3 transcription regulator protein compare
Pf1N1B4_4446 +0.7 1.4 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2935 +0.7 1.7 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_32 +0.7 2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_4479 +0.7 2.6 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Pf1N1B4_2794 +0.7 1.2 FIG00953595: hypothetical protein compare
Pf1N1B4_2054 +0.7 2.6 FIG00964469: hypothetical protein compare
Pf1N1B4_4939 +0.7 2.1 sodium/hydrogen exchanger family protein compare
Pf1N1B4_2270 +0.7 2.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_38 +0.7 2.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf1N1B4_4763 +0.7 2.3 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
Pf1N1B4_5589 +0.6 2.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) compare
Pf1N1B4_108 +0.6 1.8 FIG00954456: hypothetical protein compare
Pf1N1B4_5447 +0.6 1.9 hypothetical protein compare
Pf1N1B4_743 +0.6 2.8 Sodium-type flagellar protein motY precursor compare
Pf1N1B4_4212 +0.6 1.3 Gfa-like protein compare
Pf1N1B4_2413 +0.6 2.1 Permeases of the major facilitator superfamily compare
Pf1N1B4_4108 +0.6 1.7 Hydrolase, alpha/beta fold family compare
Pf1N1B4_649 +0.6 1.9 Small-conductance mechanosensitive channel compare
Pf1N1B4_3775 +0.6 1.7 FIG00956876: hypothetical protein compare
Pf1N1B4_3613 +0.6 1.4 hypothetical protein compare
Pf1N1B4_780 +0.6 1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4218 +0.6 1.8 Multidrug resistance protein A compare
Pf1N1B4_4134 +0.6 1.4 Na+ driven multidrug efflux pump compare
Pf1N1B4_2643 +0.6 2.0 Predicted zinc-binding protein compare
Pf1N1B4_625 +0.6 2.6 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_4505 +0.6 2.0 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_446 +0.6 2.3 Thymidylate kinase (EC 2.7.4.9) compare
Pf1N1B4_1279 +0.6 1.4 Flp pilus assembly protein TadB compare
Pf1N1B4_1819 +0.6 2.4 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_5877 +0.6 1.9 FIG00967533: hypothetical protein compare
Pf1N1B4_473 +0.6 2.0 DNA internalization-related competence protein ComEC/Rec2 compare
Pf1N1B4_5283 +0.6 1.8 hypothetical protein compare
Pf1N1B4_5498 +0.6 1.0 hypothetical protein compare
Pf1N1B4_1593 +0.6 1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5028 +0.6 2.1 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf1N1B4_2981 +0.6 2.4 hypothetical protein compare
Pf1N1B4_2293 +0.6 2.1 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_1334 +0.6 1.3 FIG00955840: hypothetical protein compare
Pf1N1B4_2980 +0.6 1.8 Acetylornithine aminotransferase (EC 2.6.1.11) compare
Pf1N1B4_3416 +0.6 2.3 Outer membrane protein romA compare
Pf1N1B4_2868 +0.6 2.4 ABC-type hemin transport system, ATPase component compare
Pf1N1B4_611 +0.6 1.6 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_5074 +0.6 1.5 Gluconate permease compare
Pf1N1B4_3390 +0.6 1.6 RNA polymerase sigma factor RpoE compare
Pf1N1B4_3135 +0.6 1.9 Prophage tail fiber protein compare
Pf1N1B4_4483 +0.6 3.2 Transcriptional regulator, ArsR family compare
Pf1N1B4_1273 +0.6 2.6 Response regulator compare
Pf1N1B4_1492 +0.6 1.1 FIG00959437: hypothetical protein compare
Pf1N1B4_5680 +0.6 2.1 DNA polymerase-like protein PA0670 compare
Pf1N1B4_104 +0.6 2.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_1353 +0.6 2.0 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_2430 +0.6 2.5 FIG004891: hypothetical protein in carnitine cluster compare
Pf1N1B4_5000 +0.6 1.8 D-glycerate transporter (predicted) compare
Pf1N1B4_3742 +0.6 1.0 Oxidoreductase, zinc-binding compare
Pf1N1B4_3793 +0.6 2.0 COG2010: Cytochrome c, mono- and diheme variants compare
Pf1N1B4_74 +0.6 1.2 hypothetical protein compare
Pf1N1B4_883 +0.6 0.9 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_4755 +0.6 1.6 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_2471 +0.6 2.2 putative iron-regulated membrane protein compare
Pf1N1B4_3620 +0.6 1.2 Flagellar biosynthesis protein FliR compare
Pf1N1B4_4851 +0.5 1.4 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_4175 +0.5 2.0 Universal stress protein family 5 compare
Pf1N1B4_693 +0.5 2.1 ABC spermidine/putrescine transporter, inner membrane subunit compare
Pf1N1B4_124 +0.5 1.3 Mechanosensitive ion channel compare
Pf1N1B4_490 +0.5 1.8 hypothetical protein compare
Pf1N1B4_1350 +0.5 1.5 GCN5-related N-acetyltransferase compare
Pf1N1B4_5365 +0.5 1.4 hypothetical protein compare
Pf1N1B4_4587 +0.5 1.3 probable dioxygenase compare
Pf1N1B4_1629 +0.5 1.8 FIG00958480: hypothetical protein compare
Pf1N1B4_3407 +0.5 2.0 Sterol desaturase, putative compare
Pf1N1B4_276 +0.5 1.7 Organic hydroperoxide resistance protein compare
Pf1N1B4_13 +0.5 1.5 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_547 +0.5 2.2 3-phosphoglycerate kinase compare
Pf1N1B4_4280 +0.5 1.5 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_307 +0.5 2.7 TesB-like acyl-CoA thioesterase 1 compare
Pf1N1B4_5649 +0.5 1.4 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_3787 +0.5 1.6 FIG00960829: hypothetical protein compare
Pf1N1B4_3347 +0.5 3.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_770 +0.5 1.7 hypothetical protein compare
Pf1N1B4_1691 +0.5 0.9 hypothetical protein compare
Pf1N1B4_139 +0.5 1.2 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_1627 +0.5 2.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_3478 +0.5 2.5 Transcriptional regulatory protein RstA compare
Pf1N1B4_5674 +0.5 1.6 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_776 +0.5 1.7 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
Pf1N1B4_2731 +0.5 1.7 Uncharacterized protein conserved in bacteria compare
Pf1N1B4_4815 +0.5 1.7 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf1N1B4_4004 +0.5 0.9 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_3855 +0.5 1.7 Chromosome partition protein smc compare
Pf1N1B4_3927 +0.5 1.0 hypothetical protein compare
Pf1N1B4_4848 +0.5 2.3 Various polyols ABC transporter, permease component 2 compare
Pf1N1B4_2733 +0.5 1.3 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_1096 +0.5 2.2 Septum formation protein Maf compare
Pf1N1B4_2930 +0.5 2.2 COG3380: Amine oxidase, flavin-containing compare
Pf1N1B4_3808 +0.5 1.6 hydrolase, haloacid dehalogenase-like family compare
Pf1N1B4_1583 +0.5 1.3 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf1N1B4_1330 +0.5 1.5 hypothetical protein compare
Pf1N1B4_2360 +0.5 1.2 hypothetical protein compare
Pf1N1B4_2263 +0.5 1.7 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf1N1B4_5571 +0.5 2.1 hypothetical protein compare
Pf1N1B4_4501 +0.5 3.0 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf1N1B4_5255 +0.5 1.3 hypothetical protein compare
Pf1N1B4_1229 +0.5 2.8 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) compare
Pf1N1B4_5833 +0.5 0.7 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_4204 +0.5 1.5 FldA protein compare
Pf1N1B4_5252 +0.5 2.0 hypothetical protein compare
Pf1N1B4_3825 +0.5 1.3 FIG00959101: hypothetical protein compare
Pf1N1B4_5977 +0.5 1.8 Transporter, MFS superfamily compare
Pf1N1B4_4554 +0.5 1.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_3111 +0.5 1.0 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_4366 +0.5 1.2 hypothetical protein compare
Pf1N1B4_4448 +0.5 1.2 COGs COG2343 compare
Pf1N1B4_3169 +0.5 1.9 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf1N1B4_1067 +0.5 2.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4880 +0.5 1.4 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Pf1N1B4_5907 +0.5 2.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Pf1N1B4_5583 +0.5 1.8 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf1N1B4_5762 +0.5 1.1 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_4999 +0.5 1.2 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_1059 +0.5 1.1 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_5311 +0.5 1.2 hypothetical protein compare
Pf1N1B4_927 +0.5 2.4 Chemotaxis protein CheV (EC 2.7.3.-) compare
Pf1N1B4_4716 +0.5 1.5 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_4242 +0.5 1.9 cell processes; transport of small molecules; amino acids, amines, peptides compare
Pf1N1B4_3325 +0.5 0.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_88 +0.5 1.3 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf1N1B4_2823 +0.5 1.2 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_1713 +0.5 2.1 Glutamate transport membrane-spanning protein compare
Pf1N1B4_4193 +0.5 1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_5722 +0.5 1.1 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_2840 +0.5 1.8 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_3886 +0.5 2.7 Aerotaxis receptor Aer compare
Pf1N1B4_126 +0.5 0.7 Pirin compare
Pf1N1B4_1253 +0.5 2.5 Niacin transporter NiaP compare
Pf1N1B4_4118 +0.5 1.5 Cyn operon transcriptional activator compare
Pf1N1B4_4734 +0.5 1.3 Fap protein with C39 domain compare
Pf1N1B4_230 +0.4 1.1 FIG00953472: hypothetical protein compare
Pf1N1B4_2400 +0.4 1.2 FIG00955006: hypothetical protein compare
Pf1N1B4_4644 +0.4 1.2 hypothetical protein compare
Pf1N1B4_4975 +0.4 1.5 hypothetical protein compare
Pf1N1B4_4260 +0.4 1.5 FIG00965772: hypothetical protein compare
Pf1N1B4_952 +0.4 1.7 Cell division protein MraZ compare
Pf1N1B4_792 +0.4 2.0 Cytochrome c551 peroxidase (EC 1.11.1.5) compare
Pf1N1B4_4646 +0.4 1.5 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_4866 +0.4 0.9 hypothetical protein compare
Pf1N1B4_4567 +0.4 1.6 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf1N1B4_4106 +0.4 1.2 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_3439 +0.4 1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments