Experiment set3IT009 for Rhodospirillum rubrum S1H

Compare to:

Hexanoic acid 21 mM; anaerobic

200 most important genes:

  gene name fitness t score description  
Rru_A0296 -5.6 -2.1 hypothetical protein (NCBI) compare
Rru_A1190 -5.3 -1.4 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A0652 -5.1 -1.9 Pseudouridine synthase, Rsu (NCBI) compare
Rru_A2100 -4.9 -3.4 Protein of unknown function DUF81 (NCBI) compare
Rru_A3558 -4.9 -1.9 Protein of unknown function UPF0005 (NCBI) compare
Rru_A0574 -4.9 -2.1 Carboxylyase-related protein (NCBI) compare
Rru_A1105 -4.5 -7.5 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A2370 -4.5 -2.4 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A0021 -4.4 -2.1 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A3341 -4.3 -2.6 Acetylglutamate kinase (NCBI) compare
Rru_A1048 -4.2 -3.4 Protein of unknown function DUF465 (NCBI) compare
Rru_A3276 -4.1 -3.8 Ornithine carbamoyltransferase (NCBI) compare
Rru_A2770 -4.1 -2.6 Uncharacterized conserved protein UCP032146 (NCBI) compare
Rru_A2983 -4.0 -1.1 Polyprenyl synthetase (NCBI) compare
Rru_A2200 -4.0 -3.3 DNA polymerase III chi subunit, HolC (NCBI) compare
Rru_A2847 -3.7 -1.0 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A1552 -3.7 -3.1 Peptidase S16, ATP-dependent protease La (NCBI) compare
Rru_A3267 -3.6 -8.8 Methionine biosynthesis MetW (NCBI) compare
Rru_A0615 -3.6 -2.7 photosynthetic complex assembly protein (NCBI) compare
Rru_A1897 -3.4 -4.5 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A1896 -3.4 -8.3 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A3264 -3.3 -7.7 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3398 -3.3 -1.5 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A2886 -3.3 -18.5 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_B0049 -3.3 -2.3 dTDP-4-dehydrorhamnose reductase (NCBI) compare
Rru_A0159 -3.3 -3.0 Exodeoxyribonuclease VII (NCBI) compare
Rru_A1767 -3.3 -2.1 peptidase M23B (NCBI) compare
Rru_A0619 -3.2 -1.7 Magnesium protoporphyrin O-methyltransferase (NCBI) compare
Rru_A0397 -3.2 -5.9 Argininosuccinate lyase (NCBI) compare
Rru_A3548 -3.1 -9.8 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A1189 -3.1 -11.0 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A3266 -3.1 -8.3 Homoserine O-acetyltransferase (NCBI) compare
Rru_A0486 -3.1 -7.9 von Willebrand factor, type A (NCBI) compare
Rru_A0467 -3.1 -11.6 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A3010 -3.1 -6.3 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A1021 -3.0 -1.7 Sigma 32 (RpoH) (NCBI) compare
Rru_A1620 -3.0 -1.0 hypothetical protein (NCBI) compare
Rru_A3428 -3.0 -12.3 Tryptophan synthase (NCBI) compare
Rru_A2771 -3.0 -3.3 Histidinol dehydrogenase (NCBI) compare
Rru_A3165 -3.0 -7.0 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A0155 -2.9 -2.9 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A2974 -2.9 -10.3 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A2363 -2.9 -7.5 Endonuclease/exonuclease/phosphatase (NCBI) compare
Rru_A0613 -2.8 -3.6 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A3277 -2.8 -3.2 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A3162 -2.8 -9.5 Prephenate dehydratase (NCBI) compare
Rru_A1786 -2.8 -14.8 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A1775 -2.8 -2.3 chromosome segregation and condensation protein ScpA (NCBI) compare
Rru_A3227 -2.8 -7.6 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A3642 -2.8 -0.9 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A3425 -2.8 -5.5 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A2979 -2.8 -6.3 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A3539 -2.7 -7.4 GlnB (protein PII) uridylyltransferase, GlnD (NCBI) compare
Rru_A1890 -2.7 -2.4 hypothetical protein (NCBI) compare
Rru_A0621 -2.7 -13.9 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A2497 -2.7 -5.3 Peptide chain release factor 3 (NCBI) compare
Rru_A3801 -2.7 -2.9 Enoyl-CoA hydratase/isomerase (NCBI) compare
Rru_A1530 -2.6 -14.0 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A2772 -2.6 -2.2 ATP phosphoribosyltransferase (NCBI) compare
Rru_A2975 -2.6 -10.8 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A2167 -2.6 -7.2 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A0625 -2.6 -2.8 hypothetical protein (NCBI) compare
Rru_A1827 -2.6 -8.8 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A3202 -2.6 -8.0 DNA topoisomerase (NCBI) compare
Rru_A1691 -2.6 -7.5 Spermine synthase (NCBI) compare
Rru_A2496 -2.6 -2.1 Polysaccharide biosynthesis protein (NCBI) compare
Rru_A0469 -2.5 -10.7 Ketol-acid reductoisomerase (NCBI) compare
Rru_A0394 -2.5 -3.4 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A0206 -2.5 -3.3 Cobalt chelatase, pCobS small subunit (NCBI) compare
Rru_A2029 -2.5 -0.9 Serine O-acetyltransferase (NCBI) compare
Rru_A2524 -2.5 -8.3 Peptidase U32 (NCBI) compare
Rru_A0622 -2.5 -6.1 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A0485 -2.5 -5.7 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A1191 -2.5 -8.7 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A0468 -2.4 -3.0 Acetolactate synthase, small subunit (NCBI) compare
Rru_A0618 -2.4 -8.7 PUCC protein (NCBI) compare
Rru_A1239 -2.4 -1.5 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A3766 -2.4 -4.3 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A0493 -2.4 -8.9 Phytoene desaturase (NCBI) compare
Rru_A2183 -2.4 -6.3 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A0291 -2.4 -2.2 hypothetical protein (NCBI) compare
Rru_A3445 -2.4 -12.7 Phosphoenolpyruvate-protein phosphotransferase (NCBI) compare
Rru_A2008 -2.4 -13.1 Thiamine biosynthesis protein ThiC (NCBI) compare
Rru_A1865 -2.4 -5.3 Dihydrodipicolinate synthase subfamily (NCBI) compare
Rru_A0217 -2.4 -11.1 Citrate lyase (NCBI) compare
Rru_A0627 -2.4 -6.6 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A3751 -2.4 -8.9 Argininosuccinate synthase (NCBI) compare
Rru_A2952 -2.4 -2.8 Methyltransferase small (NCBI) compare
Rru_A2981 -2.3 -3.9 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A0404 -2.3 -14.6 Amidophosphoribosyl transferase (NCBI) compare
Rru_A2181 -2.3 -11.3 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A1837 -2.3 -3.1 Porphobilinogen synthase (NCBI) compare
Rru_A3748 -2.3 -3.8 hypothetical protein (NCBI) compare
Rru_A0265 -2.2 -4.0 Electron-transferring-flavoproteindehydrogenase (NCBI) compare
Rru_A1201 -2.2 -10.5 MaoC-like dehydratase (NCBI) compare
Rru_A2980 -2.2 -5.9 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A3380 -2.2 -2.8 hypothetical protein (NCBI) compare
Rru_A2525 -2.2 -7.7 Peptidase U32 (NCBI) compare
Rru_A2421 -2.2 -5.5 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A0617 -2.2 -2.4 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A2549 -2.2 -6.6 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A1309 -2.2 -6.4 acetoacetyl-CoA reductase (NCBI) compare
Rru_A0614 -2.2 -6.1 hypothetical protein (NCBI) compare
Rru_A2978 -2.2 -6.4 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A0700 -2.2 -1.0 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A3393 -2.2 -2.3 Penicillin-binding protein 1A (NCBI) compare
Rru_A0624 -2.1 -7.5 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A1894 -2.1 -3.8 heavy metal translocating P-type ATPase (NCBI) compare
Rru_A2956 -2.1 -10.7 Pyruvate, phosphate dikinase (NCBI) compare
Rru_A3533 -2.1 -5.7 hypothetical protein (NCBI) compare
Rru_A3395 -2.1 -12.5 Transcriptional Regulator, LuxR family (NCBI) compare
Rru_A0270 -2.1 -7.0 Protein of unknown function DUF525 (NCBI) compare
Rru_A2038 -2.1 -5.9 Glutamate-ammonia-ligase adenylyltransferase (NCBI) compare
Rru_A3547 -2.1 -3.3 hypothetical protein (NCBI) compare
Rru_A0181 -2.1 -3.2 hypothetical protein (NCBI) compare
Rru_A3773 -2.1 -2.0 CBS domain protein (NCBI) compare
Rru_A0616 -2.1 -7.3 photosynthetic complex assembly protein (NCBI) compare
Rru_A3427 -2.0 -9.8 Tryptophan synthase, beta chain (NCBI) compare
Rru_A2246 -2.0 -11.3 Glucose-1-phosphate adenylyltransferase (NCBI) compare
Rru_A3396 -2.0 -8.4 Autoinducer synthesis protein (NCBI) compare
Rru_A0006 -2.0 -1.7 Plasmid maintenance system antidote protein (NCBI) compare
Rru_A3397 -2.0 -2.0 hypothetical protein (NCBI) compare
Rru_A0620 -2.0 -5.3 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A2440 -2.0 -2.4 NADH:ubiquinone oxidoreductase 17.2 kD subunit (NCBI) compare
Rru_A1473 -1.9 -2.5 hypothetical protein (NCBI) compare
Rru_A3770 -1.9 -5.5 tRNA-i(6)A37 modification enzyme MiaB (NCBI) compare
Rru_A2398 -1.9 -11.4 Pyruvate-ferredoxin (flavodoxin) oxidoreductase (NCBI) compare
Rru_A3139 -1.9 -6.1 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A2935 -1.9 -5.1 PAS/PAC Sensor Hybrid Histidine Kinase (NCBI) compare
Rru_A1804 -1.9 -4.1 N-acetyltransferase (NCBI) compare
Rru_A1049 -1.9 -3.0 GGDEF family protein (NCBI) compare
Rru_A0207 -1.9 -4.4 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A2399 -1.9 -4.1 conserved hypothetical protein VC1941 (NCBI) compare
Rru_A1085 -1.9 -1.2 Metallophosphoesterase (NCBI) compare
Rru_A3502 -1.8 -0.7 hypothetical protein (NCBI) compare
Rru_A2115 -1.8 -4.1 Phosphoglucomutase/phosphomannomutase (NCBI) compare
Rru_A3285 -1.8 -1.4 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A1200 -1.8 -4.9 Citrate lyase (NCBI) compare
Rru_A2798 -1.8 -2.4 hypothetical protein (NCBI) compare
Rru_A3064 -1.8 -8.3 Isovaleryl-CoA dehydrogenase (NCBI) compare
Rru_A2885 -1.8 -5.4 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A1895 -1.8 -1.7 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A1310 -1.8 -4.9 Acetyl-CoA C-acyltransferase (NCBI) compare
Rru_A1112 -1.8 -0.9 hypothetical protein (NCBI) compare
Rru_A2400 -1.7 -8.2 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A0053 -1.7 -7.0 Carboxyl transferase (NCBI) compare
Rru_A0148 -1.7 -2.9 GTP-binding protein TypA (NCBI) compare
Rru_A1536 -1.7 -2.8 UvrD/REP helicase (NCBI) compare
Rru_A1648 -1.7 -1.3 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A3693 -1.7 -2.6 Protein of unknown function UPF0011 (NCBI) compare
Rru_A3206 -1.7 -2.3 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A3062 -1.7 -9.2 Methylmalonyl-CoA mutase-like (NCBI) compare
Rru_A3594 -1.6 -1.7 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A3537 -1.6 -1.4 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A1348 -1.6 -1.7 Protein of unknown function DUF81 (NCBI) compare
Rru_A0435 -1.6 -9.2 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A0494 -1.6 -3.9 Squalene/phytoene synthase (NCBI) compare
Rru_A2000 -1.5 -3.5 hypothetical protein (NCBI) compare
Rru_A3424 -1.5 -2.8 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A0052 -1.5 -8.6 Biotin carboxylase (NCBI) compare
Rru_A0643 -1.5 -3.6 Protein of unknown function DUF152 (NCBI) compare
Rru_A1311 -1.5 -1.7 Transcriptional Regulator, MerR family (NCBI) compare
Rru_A2988 -1.5 -1.7 Precorrin-6X reductase (NCBI) compare
Rru_A2982 -1.5 -3.5 O-methyltransferase, family 2 (NCBI) compare
Rru_A1572 -1.5 -2.0 Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI) compare
Rru_A0128 -1.5 -1.9 Na+/H+ antiporter NhaA (NCBI) compare
Rru_A2936 -1.5 -6.5 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A1834 -1.5 -5.8 Enoyl-CoA hydratase/isomerase (NCBI) compare
Rru_A2411 -1.5 -6.3 Aminotransferase, class I and II (NCBI) compare
Rru_A0164 -1.4 -5.7 Sulfate transporter/antisigma-factor antagonist (NCBI) compare
Rru_A2049 -1.4 -3.7 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A1265 -1.4 -3.6 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2303 -1.4 -1.4 Deoxyribose-phosphate aldolase (NCBI) compare
Rru_A1308 -1.4 -8.5 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A3800 -1.4 -1.0 hypothetical protein (NCBI) compare
Rru_A2601 -1.4 -3.6 hypothetical protein (NCBI) compare
Rru_A1470 -1.4 -2.3 hypothetical protein (NCBI) compare
Rru_A3468 -1.4 -1.9 Transcriptional Regulator, AsnC family (NCBI) compare
Rru_A0024 -1.4 -3.5 peptidase (NCBI) compare
Rru_A0071 -1.3 -4.0 hypothetical protein (NCBI) compare
Rru_A1928 -1.3 -7.9 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A3168 -1.3 -3.0 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A0741 -1.3 -5.5 Signal Transduction Histidine Kinase (NCBI) compare
Rru_A1593 -1.3 -5.8 Peptidase M50, putative membrane-associated zinc metallopeptidase (NCBI) compare
Rru_A2479 -1.3 -5.8 Methylmalonyl-CoA mutase-like (NCBI) compare
Rru_A2025 -1.3 -4.1 Transcriptional activator, TenA family (NCBI) compare
Rru_A1608 -1.3 -5.1 MscS Mechanosensitive ion channel (NCBI) compare
Rru_A2223 -1.3 -9.7 Branched-chain amino acid aminotransferase I (NCBI) compare
Rru_A1669 -1.3 -2.1 Transcriptional Regulator, MerR family (NCBI) compare
Rru_A1607 -1.3 -6.9 4-alpha-glucanotransferase (NCBI) compare
Rru_A1312 -1.3 -6.9 AMP-dependent synthetase and ligase (NCBI) compare
Rru_A2164 -1.3 -2.9 Protein of unknown function UPF0118 (NCBI) compare
Rru_A2264 -1.3 -1.8 ferredoxin (NCBI) compare
Rru_A2603 -1.3 -4.6 Two Component Transcriptional Regulator, LuxR family (NCBI) compare
Rru_A2992 -1.2 -1.9 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A3694 -1.2 -2.3 hypothetical protein (NCBI) compare
Rru_A0432 -1.2 -3.6 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
Rru_A3079 -1.2 -3.0 3-hydroxybutyryl-CoA dehydrogenase (NCBI) compare
Rru_A3634 -1.2 -1.3 Protein of unknown function UPF0001 (NCBI) compare
Rru_A0651 -1.2 -4.3 Glutamine amidotransferase class-I (NCBI) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Hexanoic acid in Rhodospirillum rubrum S1H

For carbon source Hexanoic acid across organisms