Experiment set3IT009 for Pantoea sp. MT58

Compare to:

copper (II) chloride dihydrate 1 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_08085 -3.2 -8.6 helix-turn-helix domain-containing protein compare
IAI47_03725 -2.8 -10.1 phosphoglycerate dehydrogenase compare
IAI47_15635 -2.8 -3.6 RNA polymerase-binding protein DksA compare
IAI47_05070 -2.8 -1.2 outer membrane protein assembly factor BamB compare
IAI47_15120 -2.7 -9.1 glutamate 5-kinase compare
IAI47_15485 -2.7 -2.6 molecular chaperone Skp compare
IAI47_12865 -2.6 -12.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_09240 -2.5 -3.0 HTH-type transcriptional regulator CysB compare
IAI47_00910 -2.5 -10.6 acetylglutamate kinase compare
IAI47_16120 -2.5 -12.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_17965 -2.4 -13.9 glucose-6-phosphate isomerase compare
IAI47_00780 -2.4 -4.7 6-phosphofructokinase compare
IAI47_16350 -2.4 -9.5 phosphoserine phosphatase compare
IAI47_17220 -2.4 -18.9 glutamate synthase large subunit compare
IAI47_01035 -2.4 -15.1 dihydroxy-acid dehydratase compare
IAI47_00905 -2.3 -11.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_01050 -2.3 -14.3 ketol-acid reductoisomerase compare
IAI47_01040 -2.3 -10.5 threonine ammonia-lyase, biosynthetic compare
IAI47_17225 -2.3 -15.1 sulfite reductase subunit alpha compare
IAI47_07165 -2.3 -3.0 exodeoxyribonuclease I compare
IAI47_16080 -2.2 -7.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_03860 -2.2 -11.9 diaminopimelate decarboxylase compare
IAI47_00915 -2.2 -13.5 argininosuccinate synthase compare
IAI47_00895 -2.2 -15.5 phosphoenolpyruvate carboxylase compare
IAI47_17185 -2.2 -7.4 RNA polymerase factor sigma-54 compare
IAI47_03975 -2.2 -13.1 amino-acid N-acetyltransferase compare
IAI47_01030 -2.2 -12.5 branched-chain amino acid transaminase compare
IAI47_07080 -2.2 -10.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_16205 -2.1 -7.8 threonine synthase compare
IAI47_16830 -2.1 -11.2 ornithine carbamoyltransferase compare
IAI47_09175 -2.1 -11.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_16215 -2.1 -13.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_00880 -2.1 -13.4 cystathionine gamma-synthase compare
IAI47_09305 -2.1 -3.4 cyclic di-GMP phosphodiesterase compare
IAI47_00890 -2.1 -9.9 methylenetetrahydrofolate reductase compare
IAI47_18015 -2.1 -12.7 homoserine O-succinyltransferase compare
IAI47_04160 -2.0 -10.1 phosphoadenylyl-sulfate reductase compare
IAI47_00460 -2.0 -2.7 glutamate--ammonia ligase compare
IAI47_13900 -2.0 -12.7 asparagine synthase B compare
IAI47_13695 -2.0 -0.9 colicin uptake protein TolR compare
IAI47_06235 -2.0 -8.1 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_13770 -2.0 -10.5 citrate synthase compare
IAI47_16115 -2.0 -14.6 carbamoyl-phosphate synthase large subunit compare
IAI47_00920 -2.0 -12.3 argininosuccinate lyase compare
IAI47_15115 -2.0 -9.3 glutamate-5-semialdehyde dehydrogenase compare
IAI47_13700 -2.0 -4.5 Tol-Pal system protein TolQ compare
IAI47_16005 -2.0 -10.7 3-isopropylmalate dehydrogenase compare
IAI47_08450 -2.0 -4.1 Holliday junction branch migration DNA helicase RuvB compare
IAI47_16010 -1.9 -12.2 3-isopropylmalate dehydratase large subunit compare
IAI47_05425 -1.9 -5.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_04120 -1.9 -14.4 GTP diphosphokinase compare
IAI47_07070 -1.9 -8.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_09185 -1.9 -5.8 glutamine amidotransferase compare
IAI47_13690 -1.9 -0.8 cell envelope integrity protein TolA compare
IAI47_16000 -1.9 -12.4 2-isopropylmalate synthase compare
IAI47_21880 -1.9 -1.4 ParA family protein compare
IAI47_14350 -1.8 -7.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_18040 -1.8 -13.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_12880 -1.8 -13.7 formate C-acetyltransferase compare
IAI47_05155 -1.8 -12.4 polyphosphate kinase 1 compare
IAI47_09180 -1.8 -9.6 anthranilate phosphoribosyltransferase compare
IAI47_07060 -1.8 -9.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_09170 -1.8 -10.0 tryptophan synthase subunit beta compare
IAI47_09165 -1.8 -7.4 tryptophan synthase subunit alpha compare
IAI47_16015 -1.8 -5.7 3-isopropylmalate dehydratase small subunit compare
IAI47_04895 -1.8 -3.3 pyridoxine 5'-phosphate synthase compare
IAI47_12175 -1.8 -4.0 anti-sigma-28 factor FlgM compare
IAI47_05440 -1.8 -8.8 cysteine synthase A compare
IAI47_12885 -1.7 -9.0 pyruvate formate lyase 1-activating protein compare
IAI47_16210 -1.7 -8.4 homoserine kinase compare
IAI47_07075 -1.7 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_09235 -1.7 -1.8 type I DNA topoisomerase compare
IAI47_14945 -1.6 -3.7 pyrroline-5-carboxylate reductase compare
IAI47_07065 -1.6 -7.3 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_17020 -1.6 -4.3 30S ribosome-binding factor RbfA compare
IAI47_06275 -1.6 -10.9 amidophosphoribosyltransferase compare
IAI47_09055 -1.6 -11.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_07090 -1.6 -7.9 histidinol dehydrogenase compare
IAI47_12215 -1.6 -9.1 dihydroorotase compare
IAI47_09190 -1.5 -7.5 anthranilate synthase component 1 compare
IAI47_04835 -1.5 -7.1 ATP-dependent RNA helicase SrmB compare
IAI47_07085 -1.5 -9.7 histidinol-phosphate transaminase compare
IAI47_09275 -1.5 -7.7 orotidine-5'-phosphate decarboxylase compare
IAI47_10520 -1.5 -3.9 pyridoxamine 5'-phosphate oxidase compare
IAI47_15995 -1.5 -2.6 leu operon leader peptide compare
IAI47_18055 -1.5 -5.6 DNA-binding protein HU-alpha compare
IAI47_16870 -1.5 -6.1 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_13740 -1.4 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_18400 -1.4 -2.5 tyrosine recombinase XerC compare
IAI47_07095 -1.4 -6.8 ATP phosphoribosyltransferase compare
IAI47_04190 -1.4 -6.2 adenylyl-sulfate kinase compare
IAI47_06940 -1.4 -1.2 tyrosine-protein kinase Wzc compare
IAI47_12915 -1.4 -7.3 leucine-responsive transcriptional regulator Lrp compare
IAI47_04930 -1.4 -10.2 phosphoribosylformylglycinamidine synthase compare
IAI47_05275 -1.3 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_09360 -1.3 -1.2 peptide ABC transporter ATP-binding protein SapF compare
IAI47_03685 -1.3 -7.3 erythrose-4-phosphate dehydrogenase compare
IAI47_18045 -1.3 -7.5 phosphoribosylamine--glycine ligase compare
IAI47_00600 -1.3 -7.9 orotate phosphoribosyltransferase compare
IAI47_18530 -1.3 -2.7 thioredoxin TrxA compare
IAI47_06320 -1.3 -5.4 phosphate acetyltransferase compare
IAI47_19945 -1.3 -1.3 hypothetical protein compare
IAI47_12705 -1.2 -8.0 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_04410 -1.2 -8.2 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_03820 -1.2 -3.1 site-specific tyrosine recombinase XerD compare
IAI47_02695 -1.2 -7.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_13685 -1.2 -1.9 Tol-Pal system protein TolB compare
IAI47_05180 -1.2 -8.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_00110 -1.2 -6.2 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_13475 -1.2 -3.7 molybdopterin synthase catalytic subunit MoaE compare
IAI47_17560 -1.2 -1.2 ROK family transcriptional regulator compare
IAI47_01365 -1.1 -1.5 inorganic phosphate transporter PitA compare
IAI47_16930 -1.1 -5.7 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_10840 -1.1 -2.5 pyruvate kinase PykF compare
IAI47_12030 -1.1 -7.7 PTS glucose transporter subunit IIBC compare
IAI47_16860 -1.1 -7.7 aspartate carbamoyltransferase compare
IAI47_18315 -1.1 -5.0 HTH-type transcriptional regulator MetR compare
IAI47_06405 -1.1 -2.7 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_07475 -1.1 -1.2 hypothetical protein compare
IAI47_20250 -1.0 -1.7 DeoR family transcriptional regulator compare
IAI47_04705 -1.0 -1.5 hypothetical protein compare
IAI47_00300 -1.0 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_15540 -1.0 -5.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_00465 -1.0 -2.0 ribosome-dependent GTPase TypA compare
IAI47_09580 -1.0 -2.7 FNR family transcription factor compare
IAI47_09010 -1.0 -5.0 formyltetrahydrofolate deformylase compare
IAI47_16595 -1.0 -3.6 DUF4102 domain-containing protein compare
IAI47_18830 -0.9 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_11535 -0.9 -2.5 DcrB-related protein compare
IAI47_16925 -0.9 -7.6 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_12945 -0.9 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_03855 -0.9 -5.3 LysR family transcriptional regulator compare
IAI47_04155 -0.9 -5.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_04150 -0.9 -6.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_13935 -0.9 -1.2 tRNA-Gln compare
IAI47_06980 -0.9 -1.6 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_17005 -0.9 -4.2 polyribonucleotide nucleotidyltransferase compare
IAI47_07550 -0.9 -1.1 tRNA-Asn compare
IAI47_00770 -0.9 -0.9 general stress protein compare
IAI47_02380 -0.8 -1.4 DNA-binding transcriptional regulator Fis compare
IAI47_09210 -0.8 -4.0 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_11475 -0.8 -1.0 hypothetical protein compare
IAI47_05435 -0.8 -3.0 hypothetical protein compare
IAI47_08355 -0.8 -1.9 flagellar protein FlhE compare
IAI47_08705 -0.8 -5.7 carboxy terminal-processing peptidase compare
IAI47_16390 -0.8 -0.8 tRNA-Leu compare
IAI47_04425 -0.8 -5.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_19600 -0.8 -3.0 ABC transporter ATP-binding protein compare
IAI47_14955 -0.8 -1.5 phosphate starvation-inducible protein compare
IAI47_01020 -0.8 -5.7 acetolactate synthase 2 catalytic subunit compare
IAI47_11310 -0.8 -2.3 redox-regulated ATPase YchF compare
IAI47_00940 -0.7 -4.6 HTH-type transcriptional repressor FabR compare
IAI47_11830 -0.7 -3.7 muramoyltetrapeptide carboxypeptidase compare
IAI47_13140 -0.7 -4.3 molybdopterin molybdotransferase MoeA compare
IAI47_13495 -0.7 -3.7 GTP 3',8-cyclase MoaA compare
IAI47_19350 -0.7 -3.0 DUF305 domain-containing protein compare
IAI47_00515 -0.7 -1.7 DNA-directed RNA polymerase subunit omega compare
IAI47_06325 -0.7 -3.2 acetate kinase compare
IAI47_00455 -0.7 -4.1 nitrogen regulation protein NR(II) compare
IAI47_06400 -0.7 -1.6 NADH-quinone oxidoreductase subunit J compare
IAI47_00900 -0.7 -5.3 acetylornithine deacetylase compare
IAI47_18310 -0.7 -5.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_15990 -0.7 -5.8 acetolactate synthase 3 large subunit compare
IAI47_04710 -0.7 -2.6 hypothetical protein compare
IAI47_06395 -0.7 -1.1 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_00410 -0.7 -5.2 molybdenum cofactor guanylyltransferase MobA compare
IAI47_06415 -0.6 -2.2 NADH-quinone oxidoreductase subunit M compare
IAI47_05580 -0.6 -1.0 membrane protein YpdK compare
IAI47_05420 -0.6 -0.7 PTS glucose transporter subunit IIA compare
IAI47_18715 -0.6 -1.4 YibL family ribosome-associated protein compare
IAI47_10755 -0.6 -0.7 DUF1289 domain-containing protein compare
IAI47_07175 -0.6 -4.7 FUSC family protein compare
IAI47_12570 -0.6 -0.9 tRNA-Ser compare
IAI47_04175 -0.6 -4.1 uroporphyrinogen-III C-methyltransferase compare
IAI47_14075 -0.6 -1.5 transcription antiterminator/RNA stability regulator CspE compare
IAI47_07360 -0.6 -1.9 hypothetical protein compare
IAI47_12875 -0.6 -4.2 formate transporter FocA compare
IAI47_03375 -0.6 -3.5 peptide chain release factor 3 compare
IAI47_04260 -0.6 -4.8 nitrate reductase subunit beta compare
IAI47_12920 -0.6 -1.5 thioredoxin-disulfide reductase compare
IAI47_02400 -0.6 -0.8 YhdT family protein compare
IAI47_21035 -0.6 -1.8 TetR/AcrR family transcriptional regulator compare
IAI47_10945 -0.6 -2.5 vitamin B12 ABC transporter permease BtuC compare
IAI47_13145 -0.6 -3.5 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_20850 -0.6 -1.9 TetR/AcrR family transcriptional regulator compare
IAI47_08440 -0.6 -0.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_19045 -0.6 -1.9 two-component-system connector protein YcgZ compare
IAI47_07650 -0.6 -3.1 GNAT family N-acetyltransferase compare
IAI47_06655 -0.6 -1.9 1-phosphofructokinase compare
IAI47_11735 -0.6 -1.0 histidinol-phosphatase compare
IAI47_03595 -0.6 -3.2 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_09120 -0.6 -1.7 hypothetical protein compare
IAI47_18410 -0.5 -2.4 diaminopimelate epimerase compare
IAI47_13485 -0.5 -2.8 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_01475 -0.5 -3.3 MurR/RpiR family transcriptional regulator compare
IAI47_10890 -0.5 -4.6 FAD-binding oxidoreductase compare
IAI47_15985 -0.5 -2.9 acetolactate synthase small subunit compare
IAI47_14400 -0.5 -4.0 copper-exporting P-type ATPase CopA conserved
IAI47_08110 -0.5 -2.2 anti-adapter protein IraP compare
IAI47_16220 -0.5 -2.0 thr operon leader peptide compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress copper (II) chloride dihydrate across organisms