Experiment set3IT009 for Pantoea sp. MT58

Compare to:

copper (II) chloride dihydrate 1 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_18470 +1.2 11.1 ECA oligosaccharide polymerase compare
IAI47_14680 +1.1 6.4 cytochrome o ubiquinol oxidase subunit II compare
IAI47_21665 +1.0 4.5 DUF333 domain-containing protein compare
IAI47_00670 +1.0 9.8 sugar glycosyltransferase compare
IAI47_00290 +1.0 5.9 F0F1 ATP synthase subunit I compare
IAI47_00875 +1.0 1.4 met regulon transcriptional regulator MetJ compare
IAI47_14965 +1.0 2.6 hypothetical protein compare
IAI47_18480 +1.0 7.8 lipid III flippase WzxE compare
IAI47_18215 +1.0 2.3 Trk system potassium transporter TrkH compare
IAI47_03645 +1.0 8.9 O-antigen ligase family protein compare
IAI47_03640 +1.0 8.5 glycosyltransferase compare
IAI47_18490 +0.9 6.0 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_10500 +0.9 7.6 dipeptide/tripeptide permease DtpA compare
IAI47_14695 +0.9 3.0 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_09550 +0.9 4.1 hypothetical protein compare
IAI47_11880 +0.9 2.2 hypothetical protein compare
IAI47_07005 +0.9 3.7 glycosyltransferase family 4 protein compare
IAI47_19690 +0.9 2.0 hypothetical protein compare
IAI47_05525 +0.9 1.7 tRNA-Ala compare
IAI47_15305 +0.8 2.3 allantoin racemase compare
IAI47_14690 +0.8 5.1 cytochrome o ubiquinol oxidase subunit III compare
IAI47_07025 +0.8 5.2 glycosyltransferase family 4 protein compare
IAI47_00675 +0.8 7.3 glycosyltransferase family 9 protein compare
IAI47_19890 +0.8 2.5 hypothetical protein compare
IAI47_14685 +0.8 6.1 cytochrome o ubiquinol oxidase subunit I compare
IAI47_01750 +0.8 4.0 glycerol-3-phosphate dehydrogenase compare
IAI47_14700 +0.8 4.4 protoheme IX farnesyltransferase compare
IAI47_16085 +0.7 1.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_09675 +0.7 2.1 YoaK family small membrane protein compare
IAI47_07790 +0.7 1.5 ribose 1,5-bisphosphokinase compare
IAI47_14940 +0.7 1.6 YaiI/YqxD family protein compare
IAI47_00735 +0.6 0.9 protein-export chaperone SecB compare
IAI47_05520 +0.6 1.1 tRNA-Ala compare
IAI47_03400 +0.6 3.5 deoxyribose-phosphate aldolase compare
IAI47_16405 +0.6 2.3 siderophore-iron reductase FhuF compare
IAI47_17050 +0.6 2.9 preprotein translocase subunit SecG compare
IAI47_18520 +0.6 5.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_06420 +0.6 2.4 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_07010 +0.6 1.8 ABC transporter permease compare
IAI47_03135 +0.6 3.5 outer membrane channel protein TolC compare
IAI47_14835 +0.6 4.7 branched-chain amino acid transporter carrier protein BrnQ compare
IAI47_06475 +0.6 3.0 transcriptional regulator RcsB compare
IAI47_05035 +0.5 1.6 nucleoside-diphosphate kinase compare
IAI47_13750 +0.5 1.7 succinate dehydrogenase iron-sulfur subunit compare
IAI47_15600 +0.5 1.2 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_00835 +0.5 2.0 cell division protein ZapB compare
IAI47_21595 +0.5 3.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_13760 +0.5 1.8 succinate dehydrogenase membrane anchor subunit compare
IAI47_06360 +0.5 1.3 NADH-quinone oxidoreductase subunit A compare
IAI47_18420 +0.5 4.2 class I adenylate cyclase compare
IAI47_18505 +0.5 3.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI47_07030 +0.5 3.3 HAD family hydrolase compare
IAI47_05720 +0.5 2.6 hypothetical protein compare
IAI47_05765 +0.5 1.5 hypothetical protein compare
IAI47_05745 +0.5 1.1 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_15240 +0.5 1.8 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
IAI47_15605 +0.5 0.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_21600 +0.5 1.7 EamA family transporter compare
IAI47_17900 +0.5 0.8 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_15895 +0.5 1.3 secA regulator SecM compare
IAI47_07000 +0.5 3.5 UDP-glucose 4-epimerase GalE compare
IAI47_17250 +0.5 3.7 cell division protein ZapE compare
IAI47_08105 +0.5 1.5 DinI family protein compare
IAI47_07470 +0.5 1.6 AlpA family transcriptional regulator compare
IAI47_04750 +0.5 0.8 hypothetical protein compare
IAI47_07020 +0.4 0.8 hypothetical protein compare
IAI47_21605 +0.4 3.9 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_13755 +0.4 2.7 succinate dehydrogenase flavoprotein subunit compare
IAI47_10825 +0.4 0.6 tRNA-Val compare
IAI47_14295 +0.4 1.8 hypothetical protein compare
IAI47_01820 +0.4 2.4 two-component system response regulator OmpR compare
IAI47_06625 +0.4 2.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_10795 +0.4 2.4 HTH-type transcriptional repressor PurR compare
IAI47_03480 +0.4 1.4 DUF2474 domain-containing protein compare
IAI47_11420 +0.4 1.1 hypothetical protein compare
IAI47_07015 +0.4 2.0 ABC transporter ATP-binding protein compare
IAI47_05050 +0.4 2.1 cytoskeleton protein RodZ compare
IAI47_12985 +0.4 1.6 heavy metal-binding domain-containing protein compare
IAI47_00725 +0.4 2.2 rhodanese-like domain-containing protein compare
IAI47_18465 +0.4 3.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
IAI47_07800 +0.4 1.4 phosphonate ABC transporter ATP-binding protein compare
IAI47_15690 +0.4 2.1 hypoxanthine phosphoribosyltransferase compare
IAI47_00730 +0.4 1.6 glutaredoxin 3 compare
IAI47_08745 +0.4 1.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_02610 +0.4 2.5 DUF2065 domain-containing protein compare
IAI47_13415 +0.4 3.1 L,D-transpeptidase family protein compare
IAI47_08430 +0.4 1.2 dihydroneopterin triphosphate diphosphatase compare
IAI47_11400 +0.4 2.8 hypothetical protein compare
IAI47_13075 +0.4 2.8 hypothetical protein compare
IAI47_19725 +0.4 2.0 chemotaxis protein compare
IAI47_07395 +0.4 2.2 RidA family protein compare
IAI47_06965 +0.4 0.8 glycosyltransferase family 2 protein compare
IAI47_18495 +0.4 2.5 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_18240 +0.4 1.1 NAD(P)H-flavin reductase compare
IAI47_19940 +0.4 1.2 hypothetical protein compare
IAI47_12110 +0.4 1.5 ribonuclease E compare
IAI47_13725 +0.4 1.9 cytochrome ubiquinol oxidase subunit I compare
IAI47_15385 +0.4 2.6 methionine ABC transporter ATP-binding protein MetN compare
IAI47_15460 +0.4 1.7 ribonuclease HII compare
IAI47_18475 +0.4 2.8 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_05405 +0.4 2.2 cysteine synthase CysM compare
IAI47_08200 +0.4 1.4 hypothetical protein compare
IAI47_08570 +0.4 1.8 baseplate J/gp47 family protein compare
IAI47_05090 +0.4 1.1 hypothetical protein compare
IAI47_13925 +0.4 1.1 tRNA-Met compare
IAI47_18485 +0.4 3.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_03805 +0.4 1.5 FAD assembly factor SdhE compare
IAI47_21610 +0.4 2.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_05895 +0.3 1.5 hypothetical protein compare
IAI47_11675 +0.3 2.0 type VI secretion system-associated protein TagF compare
IAI47_19750 +0.3 1.3 GNAT family N-acetyltransferase compare
IAI47_05850 +0.3 1.3 NinF family protein compare
IAI47_15145 +0.3 2.6 beta-Ala-His dipeptidase compare
IAI47_20995 +0.3 1.0 hypothetical protein compare
IAI47_10725 +0.3 0.9 DUF1656 domain-containing protein compare
IAI47_10115 +0.3 1.4 hypothetical protein compare
IAI47_08505 +0.3 1.6 formate-dependent phosphoribosylglycinamide formyltransferase compare
IAI47_07745 +0.3 2.1 Brp/Blh family beta-carotene 15,15'-dioxygenase compare
IAI47_13065 +0.3 0.6 DUF1418 family protein compare
IAI47_20065 +0.3 1.3 YebG family protein compare
IAI47_08525 +0.3 1.9 DNA polymerase III subunit theta compare
IAI47_13050 +0.3 1.4 YbjN domain-containing protein compare
IAI47_10260 +0.3 1.8 MarR family transcriptional regulator compare
IAI47_08385 +0.3 2.0 copper homeostasis protein CutC compare
IAI47_20555 +0.3 1.8 ATP-binding cassette domain-containing protein compare
IAI47_19030 +0.3 1.3 hypothetical protein compare
IAI47_14705 +0.3 2.3 MFS transporter compare
IAI47_18840 +0.3 1.3 membrane protein insertion efficiency factor YidD compare
IAI47_16610 +0.3 1.2 hypothetical protein compare
IAI47_03630 +0.3 1.6 SprT family zinc-dependent metalloprotease compare
IAI47_02520 +0.3 2.6 malate dehydrogenase compare
IAI47_20000 +0.3 1.7 PTS sugar transporter subunit IIB compare
IAI47_00605 +0.3 1.7 nucleoid occlusion factor SlmA compare
IAI47_11765 +0.3 1.6 GlsB/YeaQ/YmgE family stress response membrane protein compare
IAI47_19245 +0.3 1.5 SIS domain-containing protein compare
IAI47_00130 +0.3 2.3 LacI family DNA-binding transcriptional regulator compare
IAI47_00825 +0.3 2.7 glycerol kinase GlpK compare
IAI47_21180 +0.3 1.3 IS6 family transposase compare
IAI47_03235 +0.3 1.5 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_18510 +0.3 2.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_04140 +0.3 2.1 7-carboxy-7-deazaguanine synthase QueE compare
IAI47_11415 +0.3 0.6 hypothetical protein compare
IAI47_01835 +0.3 1.8 Hsp33 family molecular chaperone HslO compare
IAI47_14720 +0.3 1.7 protein deglycase YajL compare
IAI47_17300 +0.3 1.7 DUF4156 domain-containing protein compare
IAI47_15400 +0.3 1.5 Rcs stress response system protein RcsF compare
IAI47_02725 +0.3 1.7 gamma-glutamylcyclotransferase compare
IAI47_05790 +0.3 1.4 hypothetical protein compare
IAI47_00845 +0.3 2.0 HslU--HslV peptidase ATPase subunit compare
IAI47_00935 +0.3 1.5 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_12435 +0.3 1.0 hypothetical protein compare
IAI47_10565 +0.3 0.7 DUF4113 domain-containing protein compare
IAI47_07390 +0.3 1.4 creatininase family protein compare
IAI47_07930 +0.3 0.6 DUF2158 domain-containing protein compare
IAI47_13520 +0.3 1.8 malonyl-ACP O-methyltransferase BioC compare
IAI47_19740 +0.3 1.7 anti-sigma factor compare
IAI47_16320 +0.3 2.0 DNA-binding transcriptional repressor DeoR compare
IAI47_19330 +0.3 1.6 hypothetical protein compare
IAI47_01825 +0.3 2.0 two-component system sensor histidine kinase EnvZ compare
IAI47_20155 +0.3 1.2 molybdate ABC transporter substrate-binding protein compare
IAI47_11065 +0.3 1.6 excinuclease Cho compare
IAI47_05555 +0.3 2.1 glucokinase compare
IAI47_12995 +0.3 1.8 arginine ABC transporter ATP-binding protein ArtP compare
IAI47_13155 +0.3 0.7 H-NS histone family protein compare
IAI47_11200 +0.3 1.2 DotU family type IV/VI secretion system protein compare
IAI47_01100 +0.3 2.4 malate dehydrogenase (quinone) compare
IAI47_15345 +0.3 2.5 murein transglycosylase D compare
IAI47_07685 +0.3 1.9 amidase compare
IAI47_00145 +0.3 1.9 DNA-3-methyladenine glycosylase I compare
IAI47_17845 +0.3 1.7 Lrp/AsnC family transcriptional regulator compare
IAI47_18145 +0.3 0.6 elongation factor Tu compare
IAI47_08935 +0.3 1.7 aldo/keto reductase compare
IAI47_03950 +0.3 1.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
IAI47_06065 +0.3 1.1 cytochrome c biogenesis heme-transporting ATPase CcmA compare
IAI47_16840 +0.3 1.9 carbamate kinase compare
IAI47_20135 +0.3 1.9 6,7-dimethyl-8-ribityllumazine synthase compare
IAI47_02605 +0.3 1.9 protease modulator HflC compare
IAI47_07885 +0.3 0.3 tRNA-Asn compare
IAI47_13765 +0.3 0.8 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_15285 +0.3 1.0 oxalurate catabolism protein HpxX compare
IAI47_09585 +0.3 2.0 DNA endonuclease SmrA compare
IAI47_12165 +0.3 1.8 flagellar basal body rod protein FlgB compare
IAI47_09380 +0.3 1.6 peptide ABC transporter substrate-binding protein SapA compare
IAI47_11760 +0.3 0.5 TonB-dependent siderophore receptor compare
IAI47_15745 +0.3 1.6 dihydrodipicolinate synthase family protein compare
IAI47_06410 +0.3 1.2 NADH-quinone oxidoreductase subunit L compare
IAI47_11040 +0.3 1.8 osmotically-inducible lipoprotein OsmE compare
IAI47_08830 +0.3 1.4 Slp family lipoprotein compare
IAI47_05000 +0.3 1.5 Fe-S cluster assembly transcriptional regulator IscR compare
IAI47_08175 +0.3 2.0 cystine ABC transporter substrate-binding protein compare
IAI47_11240 +0.3 1.5 putative cation transport regulator ChaB compare
IAI47_15155 +0.3 0.8 DUF943 family protein compare
IAI47_21335 +0.3 1.3 RepB family plasmid replication initiator protein compare
IAI47_14020 +0.3 1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_04590 +0.3 1.4 ABC transporter permease compare
IAI47_17710 +0.3 2.2 glutamate/aspartate:proton symporter GltP compare
IAI47_01560 +0.3 1.4 aspartate 1-decarboxylase autocleavage activator PanM compare
IAI47_00850 +0.3 1.8 ATP-dependent protease subunit HslV compare
IAI47_05150 +0.3 1.7 exopolyphosphatase compare
IAI47_08470 +0.3 2.2 murein DD-endopeptidase MepM compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress copper (II) chloride dihydrate across organisms