Experiment set3IT008 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Bacitracin 2 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1307 -3.4 -2.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_769 -3.3 -6.7 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1468 -3.1 -13.8 InaA protein compare
Pf1N1B4_3833 -2.9 -10.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1462 -2.8 -13.4 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3590 -2.7 -7.1 hypothetical protein compare
Pf1N1B4_3483 -2.7 -5.3 Transcriptional regulatory protein PhoP compare
Pf1N1B4_1619 -2.7 -10.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2917 -2.6 -9.7 FIG140336: TPR domain protein compare
Pf1N1B4_2037 -2.5 -3.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_4640 -2.4 -5.7 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_350 -2.4 -7.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2283 -2.4 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_3591 -2.3 -7.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_2106 -2.2 -3.9 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3093 -2.2 -2.3 Outer membrane protein H precursor compare
Pf1N1B4_1180 -2.2 -2.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_4667 -2.2 -4.2 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_2609 -2.2 -12.1 Catalase (EC 1.11.1.6) compare
Pf1N1B4_1469 -2.1 -14.1 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_1906 -2.1 -4.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1441 -2.0 -11.3 Putative esterase, FIGfam005057 compare
Pf1N1B4_2695 -2.0 -2.7 Rare lipoprotein A precursor compare
Pf1N1B4_327 -2.0 -3.2 hypothetical protein compare
Pf1N1B4_623 -2.0 -2.6 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3627 -2.0 -2.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_4636 -1.9 -2.7 TPR domain protein in aerotolerance operon compare
Pf1N1B4_58 -1.9 -7.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4666 -1.8 -5.7 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_2209 -1.8 -6.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1617 -1.8 -7.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_289 -1.7 -12.6 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_5864 -1.6 -2.7 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_888 -1.6 -3.7 Transglycosylase, Slt family compare
Pf1N1B4_348 -1.6 -3.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4669 -1.6 -2.3 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_1 -1.6 -2.7 Colicin V production protein compare
Pf1N1B4_578 -1.6 -2.5 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_629 -1.6 -2.6 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_615 -1.6 -2.3 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_2035 -1.5 -3.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_3917 -1.5 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_1675 -1.4 -2.4 Transcriptional regulator compare
Pf1N1B4_4446 -1.4 -1.6 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2401 -1.4 -1.2 Lipoprotein, putative compare
Pf1N1B4_2154 -1.4 -2.5 hypothetical protein compare
Pf1N1B4_3143 -1.4 -3.3 RecA protein compare
Pf1N1B4_2114 -1.3 -5.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_1247 -1.3 -3.1 transcriptional regulator, MerR family compare
Pf1N1B4_5860 -1.3 -2.4 Two-component response regulator compare
Pf1N1B4_644 -1.3 -2.0 Cold shock protein CspC compare
Pf1N1B4_1105 -1.3 -2.0 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_4668 -1.3 -3.3 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_2163 -1.3 -2.0 hypothetical protein compare
Pf1N1B4_1511 -1.3 -2.0 FIG027190: Putative transmembrane protein compare
Pf1N1B4_835 -1.3 -2.5 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_3197 -1.3 -3.7 OmpA family protein compare
Pf1N1B4_4585 -1.3 -2.7 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_846 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_5293 -1.2 -2.6 hypothetical protein compare
Pf1N1B4_6037 -1.2 -2.8 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_1626 -1.2 -5.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4665 -1.2 -5.0 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_3091 -1.2 -3.3 Membrane-associated zinc metalloprotease compare
Pf1N1B4_1315 -1.2 -5.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2227 -1.2 -2.4 FIG019278: hypothetical protein compare
Pf1N1B4_756 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_501 -1.2 -1.7 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_1403 -1.2 -5.6 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_1402 -1.1 -2.1 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_34 -1.1 -2.1 Xanthine permease compare
Pf1N1B4_4119 -1.1 -2.0 dioxygenase compare
Pf1N1B4_399 -1.1 -2.1 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_4001 -1.1 -2.0 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_4744 -1.1 -2.6 Transcriptional regulator, LysR family compare
Pf1N1B4_1365 -1.1 -2.9 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_1627 -1.1 -3.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_407 -1.1 -1.9 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_5447 -1.1 -2.2 hypothetical protein compare
Pf1N1B4_1234 -1.1 -3.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3559 -1.1 -7.0 Aromatic amino acid transport protein AroP compare
Pf1N1B4_126 -1.1 -1.6 Pirin compare
Pf1N1B4_430 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_4596 -1.1 -2.1 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf1N1B4_683 -1.0 -2.9 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1159 -1.0 -2.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_825 -1.0 -1.5 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf1N1B4_3525 -1.0 -1.4 hydrolase, alpha/beta fold family compare
Pf1N1B4_2250 -1.0 -4.2 Alkanesulfonates transport system permease protein compare
Pf1N1B4_2105 -1.0 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3785 -1.0 -1.7 FOG: Ankyrin repeat compare
Pf1N1B4_5393 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_630 -1.0 -3.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf1N1B4_1671 -1.0 -2.6 FIG00954962: hypothetical protein compare
Pf1N1B4_3911 -1.0 -3.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_4051 -1.0 -2.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_1236 -1.0 -4.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3566 -1.0 -3.8 Phenylalanine-4-hydroxylase (EC 1.14.16.1) compare
Pf1N1B4_5242 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_4172 -1.0 -1.3 hypothetical protein compare
Pf1N1B4_35 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_2005 -1.0 -1.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_5278 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_4040 -1.0 -2.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2874 -1.0 -1.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_722 -1.0 -1.6 SAM-dependent methyltransferases compare
Pf1N1B4_1749 -1.0 -1.7 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_5923 -0.9 -1.7 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_232 -0.9 -2.0 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3508 -0.9 -3.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_3468 -0.9 -1.7 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_175 -0.9 -1.6 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4731 -0.9 -2.9 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4518 -0.9 -2.2 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_5224 -0.9 -2.4 tRNA-Arg-CCT compare
Pf1N1B4_1278 -0.9 -2.4 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily compare
Pf1N1B4_5719 -0.9 -3.2 hypothetical protein compare
Pf1N1B4_5464 -0.9 -2.2 Cointegrate resolution protein T compare
Pf1N1B4_2856 -0.9 -2.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2886 -0.9 -6.5 Paraquat-inducible protein B compare
Pf1N1B4_6042 -0.9 -2.2 Probable transmembrane protein compare
Pf1N1B4_515 -0.9 -2.2 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf1N1B4_3260 -0.9 -2.3 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_3328 -0.9 -1.5 Rhodanese-like domain protein compare
Pf1N1B4_544 -0.9 -2.1 Small-conductance mechanosensitive channel compare
Pf1N1B4_883 -0.9 -1.4 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2047 -0.9 -2.8 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_4777 -0.9 -2.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_2684 -0.9 -1.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_4472 -0.9 -1.7 Transcriptional regulator, ArsR family compare
Pf1N1B4_3775 -0.9 -1.5 FIG00956876: hypothetical protein compare
Pf1N1B4_2686 -0.9 -2.9 DedA protein compare
Pf1N1B4_5622 -0.9 -1.7 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_866 -0.9 -1.3 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3588 -0.9 -1.5 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_1546 -0.9 -3.0 Thermonuclease family protein compare
Pf1N1B4_1704 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_1094 -0.8 -1.6 FIG005080: Possible exported protein compare
Pf1N1B4_5721 -0.8 -1.6 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_2870 -0.8 -1.5 Regulator of competence-specific genes compare
Pf1N1B4_5892 -0.8 -2.3 FIG00961753: hypothetical protein compare
Pf1N1B4_4657 -0.8 -2.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_3350 -0.8 -1.8 FIG00954807: hypothetical protein compare
Pf1N1B4_2621 -0.8 -1.3 PspA/IM30 family protein compare
Pf1N1B4_5112 -0.8 -1.3 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_2612 -0.8 -1.9 Putative transport protein compare
Pf1N1B4_3036 -0.8 -1.7 Chemotaxis signal transduction protein compare
Pf1N1B4_4725 -0.8 -2.4 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_1827 -0.8 -2.4 FIG00953482: hypothetical protein compare
Pf1N1B4_2048 -0.8 -0.9 hypothetical protein compare
Pf1N1B4_3802 -0.8 -1.5 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_3069 -0.8 -1.3 FIG00954614: hypothetical protein compare
Pf1N1B4_3372 -0.8 -2.1 FIG00962464: hypothetical protein compare
Pf1N1B4_5724 -0.8 -1.6 High-affinity iron permease compare
Pf1N1B4_2244 -0.8 -1.5 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_4408 -0.8 -1.3 two-component response regulator compare
Pf1N1B4_4438 -0.8 -1.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_4029 -0.8 -1.9 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1008 -0.8 -1.1 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_2958 -0.8 -1.3 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_2885 -0.8 -3.1 Paraquat-inducible protein A compare
Pf1N1B4_2912 -0.8 -1.0 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_4028 -0.8 -2.3 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4145 -0.8 -0.8 hypothetical protein compare
Pf1N1B4_5894 -0.8 -1.6 Glycosyltransferase compare
Pf1N1B4_5036 -0.8 -2.7 hypothetical protein compare
Pf1N1B4_298 -0.8 -1.9 Transcription elongation factor GreB compare
Pf1N1B4_5793 -0.7 -1.8 Protein RtcB compare
Pf1N1B4_5513 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_2000 -0.7 -3.2 Pyridoxal kinase (EC 2.7.1.35) compare
Pf1N1B4_5420 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_2003 -0.7 -2.5 FIG00956226: hypothetical protein compare
Pf1N1B4_4322 -0.7 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_656 -0.7 -3.9 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_1243 -0.7 -2.2 ABC transporter ATP-binding protein compare
Pf1N1B4_4999 -0.7 -2.0 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_3454 -0.7 -3.0 Mg/Co/Ni transporter MgtE / CBS domain compare
Pf1N1B4_4358 -0.7 -1.5 Acetyltransferase, GNAT family compare
Pf1N1B4_3812 -0.7 -4.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4972 -0.7 -1.4 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_4761 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_5715 -0.7 -2.6 RND efflux membrane fusion protein compare
Pf1N1B4_2322 -0.7 -1.6 FIG015547: peptidase, M16 family compare
Pf1N1B4_1048 -0.7 -2.4 Sulfate transporter, CysZ-type compare
Pf1N1B4_5357 -0.7 -0.6 hypothetical protein compare
Pf1N1B4_932 -0.7 -1.1 FIG00963370: hypothetical protein compare
Pf1N1B4_3446 -0.7 -1.4 Putative GTPases (G3E family) compare
Pf1N1B4_2681 -0.7 -2.3 MaoC-like domain protein compare
Pf1N1B4_2252 -0.7 -1.2 Organosulfonate utilization protein SsuF compare
Pf1N1B4_1613 -0.7 -1.4 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_4990 -0.7 -1.7 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_133 -0.7 -1.9 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_3938 -0.7 -1.7 Integral membrane protein TerC compare
Pf1N1B4_4563 -0.7 -1.6 Sulfate transporter compare
Pf1N1B4_1057 -0.7 -1.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4429 -0.7 -1.3 No significant database matches compare
Pf1N1B4_4055 -0.7 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_260 -0.7 -1.9 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_2891 -0.7 -2.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_5695 -0.7 -1.9 Aldehyde dehydrogenase A (EC 1.2.1.22) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Bacitracin in Pseudomonas fluorescens FW300-N1B4

For stress Bacitracin across organisms