Experiment set3IT008 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -5.4 -6.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07005 -5.1 -1.8 4Fe-4S binding protein compare
MMP_RS01020 -4.9 -2.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01005 -4.4 -3.6 riboflavin synthase compare
MMP_RS06355 -4.3 -6.3 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06680 -3.7 -22.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06975 -3.7 -5.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06685 -3.6 -18.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06715 -3.4 -22.0 cache domain-containing protein compare
MMP_RS06720 -3.4 -15.4 response regulator transcription factor compare
MMP_RS06700 -3.4 -19.0 hypothetical protein compare
MMP_RS06345 -3.4 -19.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03015 -3.1 -13.4 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -3.0 -9.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS00300 -3.0 -2.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01985 -2.9 -15.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS06350 -2.9 -11.7 HesA/MoeB/ThiF family protein compare
MMP_RS03315 -2.9 -2.4 ferrous iron transport protein A compare
MMP_RS03600 -2.9 -5.4 triose-phosphate isomerase compare
MMP_RS02010 -2.8 -13.8 PHP domain-containing protein compare
MMP_RS06625 -2.8 -5.4 DNA primase compare
MMP_RS07605 -2.8 -9.2 diadenylate cyclase compare
MMP_RS07635 -2.8 -8.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06730 -2.7 -2.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS06705 -2.6 -13.6 formate/nitrite transporter family protein compare
MMP_RS07845 -2.6 -6.5 LL-diaminopimelate aminotransferase compare
MMP_RS02280 -2.6 -1.9 DUF211 domain-containing protein compare
MMP_RS08645 -2.6 -14.4 UPF0179 family protein compare
MMP_RS07445 -2.4 -9.1 helix-turn-helix domain-containing protein compare
MMP_RS01755 -2.4 -2.4 DUF2097 domain-containing protein compare
MMP_RS02900 -2.3 -1.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08745 -2.3 -7.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01980 -2.3 -18.0 trimeric intracellular cation channel family protein compare
MMP_RS07765 -2.3 -14.7 sodium:alanine symporter family protein compare
MMP_RS04585 -2.3 -11.7 AIR synthase related protein compare
MMP_RS02195 -2.2 -7.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08210 -2.2 -4.5 phosphatidylglycerophosphatase A compare
MMP_RS03960 -2.2 -2.4 hypothetical protein compare
MMP_RS07755 -2.2 -2.6 DUF555 domain-containing protein compare
MMP_RS05920 -2.2 -1.6 50S ribosomal protein L37e compare
MMP_RS06295 -2.1 -10.4 methanogenesis marker 14 protein compare
MMP_RS08300 -2.1 -2.7 metal-sulfur cluster assembly factor compare
MMP_RS01500 -2.1 -3.1 CBS domain-containing protein compare
MMP_RS05550 -2.1 -1.6 cation:proton antiporter compare
MMP_RS03475 -2.1 -1.5 hypothetical protein compare
MMP_RS06285 -2.1 -5.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS09020 -2.0 -4.0 hypothetical protein compare
MMP_RS04780 -2.0 -3.8 ribonuclease P compare
MMP_RS08635 -2.0 -3.1 UbiA family prenyltransferase compare
MMP_RS08820 -2.0 -7.3 hypothetical protein compare
MMP_RS03025 -2.0 -9.1 molybdenum cofactor guanylyltransferase compare
MMP_RS08105 -1.9 -12.0 6-carboxyhexanoate--CoA ligase compare
MMP_RS02165 -1.8 -10.1 tRNA-dihydrouridine synthase compare
MMP_RS05430 -1.8 -4.6 TIGR00288 family NYN domain-containing protein compare
MMP_RS00305 -1.8 -3.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS00040 -1.8 -6.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS08715 -1.8 -4.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01220 -1.8 -8.0 hypothetical protein compare
MMP_RS06270 -1.8 -5.8 TIGR00300 family protein compare
MMP_RS06475 -1.7 -6.7 FAD-dependent oxidoreductase compare
MMP_RS08720 -1.7 -2.5 4Fe-4S binding protein compare
MMP_RS01225 -1.7 -7.1 DUF5379 domain-containing protein compare
MMP_RS00685 -1.7 -6.6 2-phospho-L-lactate guanylyltransferase compare
MMP_RS03640 -1.7 -4.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03035 -1.7 -6.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06340 -1.7 -9.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00295 -1.7 -4.3 gamma carbonic anhydrase family protein compare
MMP_RS06315 -1.7 -2.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08320 -1.6 -9.0 molybdopterin molybdotransferase MoeA compare
MMP_RS02355 -1.6 -4.4 30S ribosomal protein S27ae compare
MMP_RS04500 -1.6 -12.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01610 -1.6 -4.7 hypothetical protein compare
MMP_RS06120 -1.6 -4.5 UPF0147 family protein compare
MMP_RS08435 -1.6 -3.7 Era-like GTP-binding protein compare
MMP_RS06370 -1.6 -5.0 biotin synthase BioB compare
MMP_RS08095 -1.6 -7.3 dethiobiotin synthase compare
MMP_RS05815 -1.6 -6.6 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08100 -1.6 -6.3 8-amino-7-oxononanoate synthase compare
MMP_RS01380 -1.6 -5.0 PHP domain-containing protein compare
MMP_RS00515 -1.5 -2.4 DUF655 domain-containing protein compare
MMP_RS01385 -1.5 -1.4 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00895 -1.5 -4.3 hypothetical protein compare
MMP_RS00695 -1.5 -1.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06930 -1.5 -9.9 MBL fold metallo-hydrolase compare
MMP_RS02135 -1.5 -5.0 DUF5612 domain-containing protein compare
MMP_RS07380 -1.5 -4.0 transcription elongation factor Spt5 compare
MMP_RS03445 -1.5 -2.1 methanogenesis marker 17 protein compare
MMP_RS02340 -1.4 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06200 -1.4 -9.6 M24 family metallopeptidase compare
MMP_RS04710 -1.4 -1.8 hypothetical protein compare
MMP_RS04685 -1.4 -4.1 DUF126 domain-containing protein compare
MMP_RS05540 -1.4 -4.3 hypothetical protein compare
MMP_RS04605 -1.4 -3.7 cobalt ECF transporter T component CbiQ compare
MMP_RS01800 -1.4 -5.8 TIGR00303 family protein compare
MMP_RS02345 -1.3 -4.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03435 -1.3 -2.3 ketol-acid reductoisomerase compare
MMP_RS06400 -1.3 -1.6 4Fe-4S binding protein compare
MMP_RS01265 -1.3 -2.7 hypothetical protein compare
MMP_RS08790 -1.3 -2.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS04955 -1.3 -3.6 DNA topoisomerase I compare
MMP_RS01325 -1.2 -3.1 dihydroneopterin aldolase family protein compare
MMP_RS03305 -1.2 -7.7 winged helix-turn-helix domain-containing protein compare
MMP_RS02800 -1.2 -4.6 nucleotidyltransferase domain-containing protein compare
MMP_RS06230 -1.2 -3.4 helix-turn-helix domain-containing protein compare
MMP_RS07685 -1.2 -7.9 TIGR01212 family radical SAM protein compare
MMP_RS00290 -1.2 -7.4 hypothetical protein compare
MMP_RS07600 -1.2 -3.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06885 -1.2 -3.2 50S ribosome-binding GTPase compare
MMP_RS02240 -1.2 -4.3 methanogenesis marker 7 protein compare
MMP_RS05510 -1.2 -4.8 Rrf2 family transcriptional regulator compare
MMP_RS07525 -1.1 -7.4 4Fe-4S binding protein compare
MMP_RS07645 -1.1 -6.5 aldehyde dehydrogenase family protein compare
MMP_RS03400 -1.1 -3.5 archease compare
MMP_RS00320 -1.1 -3.5 class I SAM-dependent methyltransferase compare
MMP_RS06925 -1.1 -3.4 ribonuclease VapC4 compare
MMP_RS07580 -1.1 -3.0 DUF356 domain-containing protein compare
MMP_RS04775 -1.1 -2.9 adenosylhomocysteinase compare
MMP_RS07775 -1.1 -4.7 alanine dehydrogenase compare
MMP_RS06895 -1.1 -2.2 selenocysteine-specific translation elongation factor compare
MMP_RS02885 -1.1 -9.4 molybdopterin biosynthesis protein compare
MMP_RS02875 -1.1 -7.8 chorismate pyruvate-lyase family protein compare
MMP_RS01830 -1.1 -2.4 tRNA-Val compare
MMP_RS01725 -1.1 -4.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS00110 -1.1 -4.4 hypothetical protein compare
MMP_RS00520 -1.1 -2.0 RNA polymerase Rpb4 family protein compare
MMP_RS07750 -1.1 -3.8 DUF357 domain-containing protein compare
MMP_RS05765 -1.0 -7.4 M42 family metallopeptidase compare
MMP_RS03155 -1.0 -5.9 precorrin-6A reductase compare
MMP_RS05555 -1.0 -2.0 DUF4040 domain-containing protein compare
MMP_RS07200 -1.0 -5.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07420 -1.0 -4.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05250 -1.0 -2.1 NFYB/HAP3 family transcription factor subunit compare
MMP_RS05060 -1.0 -8.3 AAA family ATPase compare
MMP_RS06980 -1.0 -6.2 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS06105 -0.9 -4.8 hydrogenase maturation peptidase HycI compare
MMP_RS07425 -0.9 -5.9 GTP-binding protein compare
MMP_RS00130 -0.9 -1.7 nickel-responsive transcriptional regulator NikR compare
MMP_RS06630 -0.9 -1.5 UPF0058 family protein compare
MMP_RS06020 -0.9 -3.5 archaeoflavoprotein AfpA compare
MMP_RS00720 -0.9 -5.3 metal-dependent hydrolase compare
MMP_RS06865 -0.9 -1.9 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS05845 -0.9 -2.4 tRNA-intron lyase compare
MMP_RS05345 -0.9 -4.6 hypothetical protein compare
MMP_RS00985 -0.9 -4.4 CDC48 family AAA ATPase compare
MMP_RS02190 -0.9 -1.5 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS00115 -0.9 -6.5 radical SAM protein compare
MMP_RS04615 -0.9 -1.5 PDGLE domain-containing protein compare
MMP_RS01840 -0.9 -6.3 TIGR00289 family protein compare
MMP_RS08690 -0.9 -5.4 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS01365 -0.8 -2.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS03095 -0.8 -5.5 diphthine synthase compare
MMP_RS06215 -0.8 -3.8 30S ribosomal protein S6e compare
MMP_RS05080 -0.8 -6.9 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS03700 -0.8 -5.0 sodium:proton antiporter compare
MMP_RS02170 -0.8 -3.9 CBS domain-containing protein compare
MMP_RS03250 -0.8 -2.2 MJ1244 family protein compare
MMP_RS05100 -0.8 -7.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS00035 -0.8 -6.4 DUF2098 family protein compare
MMP_RS05545 -0.8 -5.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00900 -0.8 -2.9 50S ribosomal protein L39e compare
MMP_RS03580 -0.8 -3.1 signal recognition particle-docking protein FtsY compare
MMP_RS05070 -0.8 -5.6 4Fe-4S dicluster domain-containing protein compare
MMP_RS01445 -0.8 -5.6 hypothetical protein compare
MMP_RS07730 -0.8 -2.0 pyruvate synthase subunit beta compare
MMP_RS03590 -0.8 -5.1 METTL5 family protein compare
MMP_RS05095 -0.8 -4.9 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01700 -0.8 -1.0 dihydroxy-acid dehydratase compare
MMP_RS05055 -0.8 -6.6 DUF166 domain-containing protein compare
MMP_RS07790 -0.8 -4.7 segregation/condensation protein A compare
MMP_RS05065 -0.7 -4.2 CooT family nickel-binding protein compare
MMP_RS02130 -0.7 -2.9 zinc metalloprotease HtpX compare
MMP_RS07390 -0.7 -2.3 cell division protein FtsZ compare
MMP_RS05925 -0.7 -3.3 small nuclear ribonucleoprotein compare
MMP_RS07350 -0.7 -1.5 preprotein translocase subunit Sec61beta compare
MMP_RS05090 -0.7 -5.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS02175 -0.7 -0.8 DUF1611 domain-containing protein compare
MMP_RS05075 -0.7 -5.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS01495 -0.7 -5.1 TraB/GumN family protein compare
MMP_RS07195 -0.7 -5.3 M20 family metallo-hydrolase compare
MMP_RS08785 -0.7 -1.5 RNA-protein complex protein Nop10 compare
MMP_RS00850 -0.7 -3.7 TIGR01177 family methyltransferase compare
MMP_RS08460 -0.6 -1.8 proteasome-activating nucleotidase compare
MMP_RS05425 -0.6 -2.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS03110 -0.6 -3.2 glycosyltransferase family 2 protein compare
MMP_RS04720 -0.6 -1.7 DedA family protein compare
MMP_RS03555 -0.6 -5.3 transcriptional regulator compare
MMP_RS07710 -0.6 -4.2 cell division protein FtsZ compare
MMP_RS01045 -0.6 -3.7 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS04620 -0.6 -4.2 cobalt transporter CbiM compare
MMP_RS08165 -0.6 -0.6 phosphoglycerate dehydrogenase compare
MMP_RS07735 -0.6 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08915 -0.6 -2.1 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS00060 -0.6 -1.4 3-dehydroquinate synthase II compare
MMP_RS07180 -0.6 -4.0 DEAD/DEAH box helicase compare
MMP_RS00620 -0.6 -4.2 4Fe-4S binding protein compare
MMP_RS08330 -0.6 -3.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS08440 -0.6 -3.0 cell division protein SepF compare
MMP_RS07575 -0.6 -2.4 RNA ligase partner protein compare
MMP_RS08840 -0.6 -4.8 class I SAM-dependent methyltransferase compare
MMP_RS07545 -0.6 -1.0 HTH domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms