Experiment set3IT008 for Pantoea sp. MT58

Compare to:

Defined media control, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_00300 -3.9 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_16995 -3.5 -2.4 protein YrbN compare
IAI47_12865 -2.9 -14.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00460 -2.9 -2.7 glutamate--ammonia ligase compare
IAI47_15635 -2.8 -1.9 RNA polymerase-binding protein DksA compare
IAI47_05070 -2.8 -1.2 outer membrane protein assembly factor BamB compare
IAI47_06940 -2.7 -1.6 tyrosine-protein kinase Wzc compare
IAI47_16085 -2.6 -2.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_09170 -2.6 -13.7 tryptophan synthase subunit beta compare
IAI47_16205 -2.6 -8.1 threonine synthase compare
IAI47_09040 -2.5 -2.4 NAD-dependent epimerase compare
IAI47_17185 -2.5 -8.3 RNA polymerase factor sigma-54 compare
IAI47_03725 -2.4 -10.7 phosphoglycerate dehydrogenase compare
IAI47_09240 -2.4 -3.3 HTH-type transcriptional regulator CysB compare
IAI47_16005 -2.4 -12.2 3-isopropylmalate dehydrogenase compare
IAI47_17220 -2.4 -18.9 glutamate synthase large subunit compare
IAI47_08085 -2.4 -6.4 helix-turn-helix domain-containing protein compare
IAI47_01035 -2.4 -15.5 dihydroxy-acid dehydratase compare
IAI47_00910 -2.3 -10.0 acetylglutamate kinase compare
IAI47_00920 -2.3 -13.5 argininosuccinate lyase compare
IAI47_17225 -2.3 -14.7 sulfite reductase subunit alpha compare
IAI47_17965 -2.3 -12.9 glucose-6-phosphate isomerase compare
IAI47_07020 -2.3 -2.1 hypothetical protein compare
IAI47_01030 -2.2 -13.1 branched-chain amino acid transaminase compare
IAI47_07070 -2.2 -7.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_09180 -2.2 -10.7 anthranilate phosphoribosyltransferase compare
IAI47_00890 -2.2 -9.8 methylenetetrahydrofolate reductase compare
IAI47_00780 -2.2 -5.4 6-phosphofructokinase compare
IAI47_00895 -2.2 -14.9 phosphoenolpyruvate carboxylase compare
IAI47_09305 -2.1 -3.8 cyclic di-GMP phosphodiesterase compare
IAI47_05275 -2.1 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_00915 -2.1 -12.7 argininosuccinate synthase compare
IAI47_13685 -2.1 -1.8 Tol-Pal system protein TolB compare
IAI47_00905 -2.1 -9.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_01040 -2.1 -10.7 threonine ammonia-lyase, biosynthetic compare
IAI47_01050 -2.1 -13.9 ketol-acid reductoisomerase compare
IAI47_07085 -2.1 -12.1 histidinol-phosphate transaminase compare
IAI47_16210 -2.1 -10.8 homoserine kinase compare
IAI47_16000 -2.0 -13.1 2-isopropylmalate synthase compare
IAI47_09580 -2.0 -3.5 FNR family transcription factor compare
IAI47_03860 -2.0 -11.4 diaminopimelate decarboxylase compare
IAI47_06235 -2.0 -6.2 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_07075 -2.0 -9.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_09190 -2.0 -9.0 anthranilate synthase component 1 compare
IAI47_09165 -2.0 -8.9 tryptophan synthase subunit alpha compare
IAI47_12215 -2.0 -9.9 dihydroorotase compare
IAI47_09185 -2.0 -4.5 glutamine amidotransferase compare
IAI47_16830 -2.0 -10.3 ornithine carbamoyltransferase compare
IAI47_18015 -2.0 -11.8 homoserine O-succinyltransferase compare
IAI47_04120 -2.0 -14.3 GTP diphosphokinase compare
IAI47_16215 -2.0 -13.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_18040 -1.9 -12.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_11760 -1.9 -2.2 TonB-dependent siderophore receptor compare
IAI47_13770 -1.9 -10.1 citrate synthase compare
IAI47_07095 -1.9 -8.9 ATP phosphoribosyltransferase compare
IAI47_16115 -1.9 -14.2 carbamoyl-phosphate synthase large subunit compare
IAI47_09175 -1.9 -10.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_05155 -1.9 -13.2 polyphosphate kinase 1 compare
IAI47_16015 -1.9 -5.3 3-isopropylmalate dehydratase small subunit compare
IAI47_00880 -1.9 -11.4 cystathionine gamma-synthase compare
IAI47_13690 -1.9 -0.8 cell envelope integrity protein TolA compare
IAI47_15115 -1.9 -9.3 glutamate-5-semialdehyde dehydrogenase compare
IAI47_07060 -1.8 -9.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_08450 -1.8 -3.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_07165 -1.8 -2.9 exodeoxyribonuclease I compare
IAI47_16350 -1.8 -7.4 phosphoserine phosphatase compare
IAI47_13900 -1.8 -12.2 asparagine synthase B compare
IAI47_16080 -1.8 -6.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_16010 -1.8 -11.2 3-isopropylmalate dehydratase large subunit compare
IAI47_12885 -1.8 -7.7 pyruvate formate lyase 1-activating protein compare
IAI47_07065 -1.8 -8.4 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_08445 -1.7 -1.7 Holliday junction branch migration protein RuvA compare
IAI47_01365 -1.7 -1.6 inorganic phosphate transporter PitA compare
IAI47_16870 -1.7 -6.6 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_12175 -1.7 -3.4 anti-sigma-28 factor FlgM compare
IAI47_07090 -1.7 -9.2 histidinol dehydrogenase compare
IAI47_15120 -1.7 -7.0 glutamate 5-kinase compare
IAI47_03975 -1.7 -9.7 amino-acid N-acetyltransferase compare
IAI47_12705 -1.7 -9.3 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_09275 -1.7 -6.2 orotidine-5'-phosphate decarboxylase compare
IAI47_07080 -1.6 -7.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_16120 -1.6 -9.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_00600 -1.6 -8.3 orotate phosphoribosyltransferase compare
IAI47_14945 -1.6 -3.7 pyrroline-5-carboxylate reductase compare
IAI47_18400 -1.6 -2.5 tyrosine recombinase XerC compare
IAI47_04930 -1.5 -11.7 phosphoribosylformylglycinamidine synthase compare
IAI47_13700 -1.5 -3.8 Tol-Pal system protein TolQ compare
IAI47_12880 -1.5 -11.5 formate C-acetyltransferase compare
IAI47_05440 -1.5 -8.0 cysteine synthase A compare
IAI47_06275 -1.5 -10.8 amidophosphoribosyltransferase compare
IAI47_05180 -1.5 -9.3 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_16860 -1.5 -9.6 aspartate carbamoyltransferase compare
IAI47_18045 -1.5 -7.9 phosphoribosylamine--glycine ligase compare
IAI47_04160 -1.5 -7.9 phosphoadenylyl-sulfate reductase compare
IAI47_04835 -1.4 -6.9 ATP-dependent RNA helicase SrmB compare
IAI47_12920 -1.4 -3.8 thioredoxin-disulfide reductase compare
IAI47_12915 -1.4 -7.7 leucine-responsive transcriptional regulator Lrp compare
IAI47_09055 -1.4 -9.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_11310 -1.4 -3.7 redox-regulated ATPase YchF compare
IAI47_04895 -1.4 -4.1 pyridoxine 5'-phosphate synthase compare
IAI47_10840 -1.3 -4.4 pyruvate kinase PykF compare
IAI47_21880 -1.3 -1.1 ParA family protein compare
IAI47_09010 -1.3 -5.9 formyltetrahydrofolate deformylase compare
IAI47_04410 -1.3 -8.9 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_00515 -1.3 -1.9 DNA-directed RNA polymerase subunit omega compare
IAI47_00465 -1.3 -1.7 ribosome-dependent GTPase TypA compare
IAI47_14350 -1.2 -4.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_05425 -1.2 -3.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_15540 -1.2 -6.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_10925 -1.2 -3.5 EAL domain-containing protein compare
IAI47_03375 -1.2 -6.6 peptide chain release factor 3 compare
IAI47_00110 -1.1 -5.7 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_10520 -1.1 -2.9 pyridoxamine 5'-phosphate oxidase compare
IAI47_06320 -1.1 -4.8 phosphate acetyltransferase compare
IAI47_18315 -1.1 -4.7 HTH-type transcriptional regulator MetR compare
IAI47_03855 -1.1 -5.3 LysR family transcriptional regulator compare
IAI47_00455 -1.0 -6.3 nitrogen regulation protein NR(II) compare
IAI47_12370 -1.0 -2.7 acyl carrier protein compare
IAI47_03685 -1.0 -5.6 erythrose-4-phosphate dehydrogenase compare
IAI47_15985 -1.0 -5.4 acetolactate synthase small subunit compare
IAI47_03820 -0.9 -2.8 site-specific tyrosine recombinase XerD compare
IAI47_16925 -0.9 -7.4 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_09210 -0.9 -4.4 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_04705 -0.9 -1.2 hypothetical protein compare
IAI47_13485 -0.9 -3.4 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_02695 -0.9 -5.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_13885 -0.9 -1.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_00870 -0.9 -0.7 50S ribosomal protein L31 compare
IAI47_04870 -0.9 -3.3 elongation factor 4 compare
IAI47_04425 -0.9 -4.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_13840 -0.9 -2.6 replication initiation negative regulator SeqA compare
IAI47_05195 -0.9 -1.3 DnaA inactivator Hda compare
IAI47_21830 -0.8 -2.0 hypothetical protein compare
IAI47_08705 -0.8 -5.5 carboxy terminal-processing peptidase compare
IAI47_12945 -0.8 -5.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_03595 -0.8 -3.9 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_00445 -0.8 -5.2 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_06325 -0.8 -3.2 acetate kinase compare
IAI47_18055 -0.8 -2.6 DNA-binding protein HU-alpha compare
IAI47_13145 -0.8 -3.7 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_06245 -0.8 -2.3 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_04190 -0.7 -3.8 adenylyl-sulfate kinase compare
IAI47_14075 -0.7 -1.0 transcription antiterminator/RNA stability regulator CspE compare
IAI47_04270 -0.7 -4.7 respiratory nitrate reductase subunit gamma compare
IAI47_12645 -0.7 -1.9 porin OmpA compare
IAI47_12030 -0.7 -5.1 PTS glucose transporter subunit IIBC compare
IAI47_00410 -0.7 -5.6 molybdenum cofactor guanylyltransferase MobA compare
IAI47_01975 -0.7 -5.3 phosphoribulokinase compare
IAI47_02350 -0.7 -0.9 tRNA-Thr compare
IAI47_04155 -0.7 -5.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_16930 -0.7 -3.4 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_13480 -0.7 -1.3 molybdopterin synthase sulfur carrier subunit compare
IAI47_00925 -0.7 -2.9 hypothetical protein compare
IAI47_02515 -0.7 -2.6 transcriptional regulator ArgR compare
IAI47_18310 -0.7 -5.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_12300 -0.7 -1.5 hypothetical protein compare
IAI47_13140 -0.7 -4.1 molybdopterin molybdotransferase MoeA compare
IAI47_05435 -0.7 -2.2 hypothetical protein compare
IAI47_16190 -0.7 -2.3 molybdopterin adenylyltransferase compare
IAI47_01135 -0.7 -0.6 hypothetical protein compare
IAI47_17205 -0.7 -1.5 PTS phosphocarrier protein NPr compare
IAI47_01020 -0.7 -4.7 acetolactate synthase 2 catalytic subunit compare
IAI47_15970 -0.7 -1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_02585 -0.6 -1.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_15990 -0.6 -5.3 acetolactate synthase 3 large subunit compare
IAI47_13495 -0.6 -3.2 GTP 3',8-cyclase MoaA compare
IAI47_17035 -0.6 -1.2 ribosome maturation factor RimP compare
IAI47_18595 -0.6 -5.0 endoglucanase compare
IAI47_14555 -0.6 -2.0 hemolysin expression modulator Hha compare
IAI47_11500 -0.6 -2.0 type VI secretion system tip protein VgrG compare
IAI47_17005 -0.6 -2.8 polyribonucleotide nucleotidyltransferase compare
IAI47_05630 -0.6 -2.4 hypothetical protein compare
IAI47_01025 -0.6 -3.1 acetolactate synthase 2 small subunit compare
IAI47_17255 -0.6 -1.5 DUF1043 family protein compare
IAI47_18770 -0.6 -1.8 type I addiction module toxin, SymE family compare
IAI47_03585 -0.6 -2.4 XTP/dITP diphosphatase compare
IAI47_17895 -0.6 -3.3 diacylglycerol kinase compare
IAI47_01005 -0.6 -4.2 DUF413 domain-containing protein compare
IAI47_09235 -0.6 -1.1 type I DNA topoisomerase compare
IAI47_10890 -0.6 -4.8 FAD-binding oxidoreductase compare
IAI47_13050 -0.6 -1.6 YbjN domain-containing protein compare
IAI47_00900 -0.5 -4.1 acetylornithine deacetylase compare
IAI47_05325 -0.5 -1.3 DUF1471 domain-containing protein compare
IAI47_01740 -0.5 -1.5 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_09410 -0.5 -2.2 phage shock protein PspD compare
IAI47_11830 -0.5 -3.0 muramoyltetrapeptide carboxypeptidase compare
IAI47_18675 -0.5 -2.4 MarR family transcriptional regulator compare
IAI47_04260 -0.5 -4.0 nitrate reductase subunit beta compare
IAI47_02040 -0.5 -3.1 peptidylprolyl isomerase compare
IAI47_13950 -0.5 -0.4 PhoH family protein compare
IAI47_05320 -0.5 -3.9 nitrate/nitrite two-component system sensor histidine kinase NarQ compare
IAI47_09675 -0.5 -1.3 YoaK family small membrane protein compare
IAI47_12875 -0.5 -3.0 formate transporter FocA compare
IAI47_00940 -0.5 -3.0 HTH-type transcriptional repressor FabR compare
IAI47_20850 -0.5 -2.0 TetR/AcrR family transcriptional regulator compare
IAI47_08430 -0.5 -1.4 dihydroneopterin triphosphate diphosphatase compare
IAI47_01940 -0.5 -2.3 DUF2559 family protein compare
IAI47_14730 -0.5 -0.4 exodeoxyribonuclease VII small subunit compare
IAI47_11520 -0.5 -2.1 type VI secretion system tip protein VgrG compare
IAI47_02380 -0.5 -0.9 DNA-binding transcriptional regulator Fis compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in no stress control experiments

For no stress control Sodium nitrate across organisms