Experiment set3IT007 for Rhodospirillum rubrum S1H

Compare to:

Hexanoic acid 21 mM; anaerobic

200 most important genes:

  gene name fitness t score description  
Rru_A0752 -6.1 -1.4 hypothetical protein (NCBI) compare
Rru_B0005 -6.0 -0.8 Glycosyl transferase (NCBI) compare
Rru_A1735 -5.8 -0.8 hypothetical protein (NCBI) compare
Rru_A3626 -5.8 -1.5 Glucose inhibited division protein (NCBI) compare
Rru_A0599 -5.5 -1.2 Phosphate ABC transporter, permease protein PstC (NCBI) compare
Rru_A3800 -5.5 -1.2 hypothetical protein (NCBI) compare
Rru_A3149 -5.4 -0.7 Protein of unknown function DUF214 (NCBI) compare
Rru_A0296 -5.4 -1.4 hypothetical protein (NCBI) compare
Rru_A0668 -5.4 -2.4 Cobalamin-5-phosphate synthase CobS (NCBI) compare
Rru_A0615 -5.1 -2.2 photosynthetic complex assembly protein (NCBI) compare
Rru_A1837 -5.0 -2.3 Porphobilinogen synthase (NCBI) compare
Rru_A3558 -4.7 -1.2 Protein of unknown function UPF0005 (NCBI) compare
Rru_A1767 -4.6 -1.3 peptidase M23B (NCBI) compare
Rru_A3369 -4.3 -1.1 hypothetical protein (NCBI) compare
Rru_A3266 -4.3 -11.2 Homoserine O-acetyltransferase (NCBI) compare
Rru_A3704 -4.2 -6.8 Periplasmic solute binding protein (NCBI) compare
Rru_A3276 -4.1 -4.0 Ornithine carbamoyltransferase (NCBI) compare
Rru_A2421 -4.1 -5.8 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A1064 -4.0 -1.4 Plasmid maintenance system killer (NCBI) compare
Rru_A2983 -4.0 -0.7 Polyprenyl synthetase (NCBI) compare
Rru_A2771 -4.0 -4.7 Histidinol dehydrogenase (NCBI) compare
Rru_A1105 -4.0 -6.3 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A1189 -3.9 -12.5 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A2772 -3.9 -1.9 ATP phosphoribosyltransferase (NCBI) compare
Rru_A3162 -3.9 -12.5 Prephenate dehydratase (NCBI) compare
Rru_A0397 -3.9 -6.1 Argininosuccinate lyase (NCBI) compare
Rru_A0574 -3.8 -1.6 Carboxylyase-related protein (NCBI) compare
Rru_A1239 -3.8 -1.0 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A3751 -3.7 -9.0 Argininosuccinate synthase (NCBI) compare
Rru_A2847 -3.7 -0.7 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A2886 -3.7 -21.2 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A1865 -3.7 -6.2 Dihydrodipicolinate synthase subfamily (NCBI) compare
Rru_A2869 -3.6 -0.7 Exopolysaccharide synthesis, ExoD (NCBI) compare
Rru_A2981 -3.5 -4.2 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A0232 -3.4 -5.3 hypothetical protein (NCBI) compare
Rru_A1691 -3.3 -7.9 Spermine synthase (NCBI) compare
Rru_A2370 -3.2 -1.7 GCN5-related N-acetyltransferase (NCBI) compare
Rru_A3594 -3.2 -3.2 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A3748 -3.2 -3.4 hypothetical protein (NCBI) compare
Rru_A2524 -3.1 -11.2 Peptidase U32 (NCBI) compare
Rru_A1530 -3.1 -12.0 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A3277 -3.1 -4.2 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A3202 -3.0 -8.5 DNA topoisomerase (NCBI) compare
Rru_A1955 -3.0 -1.4 Phosphoribosyltransferase (NCBI) compare
Rru_A1191 -3.0 -8.3 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A0494 -3.0 -4.8 Squalene/phytoene synthase (NCBI) compare
Rru_A1804 -3.0 -2.1 N-acetyltransferase (NCBI) compare
Rru_A3267 -3.0 -5.0 Methionine biosynthesis MetW (NCBI) compare
Rru_A2525 -2.9 -9.2 Peptidase U32 (NCBI) compare
Rru_A3275 -2.9 -1.8 Hsp33 protein (NCBI) compare
Rru_A1190 -2.9 -1.3 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A3195 -2.9 -2.7 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A1786 -2.8 -15.0 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A3502 -2.8 -0.5 hypothetical protein (NCBI) compare
Rru_A0485 -2.8 -6.2 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A0467 -2.8 -11.7 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A0394 -2.8 -2.1 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A3264 -2.8 -7.0 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A2975 -2.8 -9.9 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A3341 -2.7 -1.9 Acetylglutamate kinase (NCBI) compare
Rru_A1620 -2.7 -0.6 hypothetical protein (NCBI) compare
Rru_A0554 -2.7 -2.9 Rh-like protein/ammonium transporter (NCBI) compare
Rru_A1827 -2.7 -9.2 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A2440 -2.7 -2.6 NADH:ubiquinone oxidoreductase 17.2 kD subunit (NCBI) compare
Rru_A2902 -2.7 -0.6 hypothetical protein (NCBI) compare
Rru_A1890 -2.7 -1.8 hypothetical protein (NCBI) compare
Rru_A0469 -2.6 -9.7 Ketol-acid reductoisomerase (NCBI) compare
Rru_A3687 -2.6 -4.1 Cobalt transport protein (NCBI) compare
Rru_A3548 -2.6 -9.0 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A2100 -2.6 -4.0 Protein of unknown function DUF81 (NCBI) compare
Rru_A3322 -2.6 -2.7 Transcriptional Regulator, Crp/Fnr family (NCBI) compare
Rru_A1201 -2.6 -11.9 MaoC-like dehydratase (NCBI) compare
Rru_A0617 -2.6 -3.7 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A2183 -2.6 -8.1 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A3445 -2.6 -10.2 Phosphoenolpyruvate-protein phosphotransferase (NCBI) compare
Rru_A3167 -2.6 -3.8 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A2989 -2.5 -2.1 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A2935 -2.5 -5.1 PAS/PAC Sensor Hybrid Histidine Kinase (NCBI) compare
Rru_A3010 -2.5 -6.0 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2415 -2.5 -1.1 hypothetical protein (NCBI) compare
Rru_A3642 -2.5 -0.6 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A1896 -2.5 -7.2 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A0627 -2.4 -7.2 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A1179 -2.4 -0.8 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A3380 -2.4 -2.0 hypothetical protein (NCBI) compare
Rru_A0493 -2.4 -7.1 Phytoene desaturase (NCBI) compare
Rru_A0624 -2.4 -7.8 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A1536 -2.4 -4.0 UvrD/REP helicase (NCBI) compare
Rru_A1894 -2.4 -4.0 heavy metal translocating P-type ATPase (NCBI) compare
Rru_A2363 -2.4 -6.0 Endonuclease/exonuclease/phosphatase (NCBI) compare
Rru_A0468 -2.4 -3.6 Acetolactate synthase, small subunit (NCBI) compare
Rru_A2974 -2.4 -8.7 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A3528 -2.3 -1.9 hypothetical protein (NCBI) compare
Rru_A2181 -2.3 -10.8 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A0217 -2.3 -8.7 Citrate lyase (NCBI) compare
Rru_A0537 -2.3 -2.6 Protein of unknown function DUF955 (NCBI) compare
Rru_A1777 -2.3 -2.5 Beta-N-acetylhexosaminidase (NCBI) compare
Rru_A0618 -2.3 -7.9 PUCC protein (NCBI) compare
Rru_A3227 -2.3 -7.8 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A1897 -2.3 -3.2 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A1200 -2.3 -2.7 Citrate lyase (NCBI) compare
Rru_A0622 -2.3 -6.7 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A0334 -2.3 -2.5 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A3425 -2.3 -5.4 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A2346 -2.2 -1.1 hypothetical protein (NCBI) compare
Rru_A0683 -2.2 -0.4 3-deoxy-7-phosphoheptulonate synthase (NCBI) compare
Rru_A0621 -2.2 -10.4 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A2885 -2.2 -7.1 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A0159 -2.2 -1.9 Exodeoxyribonuclease VII (NCBI) compare
Rru_A0486 -2.2 -5.9 von Willebrand factor, type A (NCBI) compare
Rru_A0620 -2.2 -4.9 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A1640 -2.2 -2.4 Multiple resistance and pH regulation protein F (NCBI) compare
Rru_A2038 -2.2 -6.3 Glutamate-ammonia-ligase adenylyltransferase (NCBI) compare
Rru_A0922 -2.2 -1.0 Protein of unknown function DUF1044 (NCBI) compare
Rru_A1086 -2.1 -2.3 hypothetical protein (RefSeq) compare
Rru_A0894 -2.1 -1.6 stress protein (NCBI) compare
Rru_A0155 -2.1 -1.8 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A2275 -2.1 -1.6 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A3533 -2.1 -4.1 hypothetical protein (NCBI) compare
Rru_A2901 -2.1 -1.1 Histidine triad (HIT) protein (NCBI) compare
Rru_A2979 -2.1 -5.1 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A2497 -2.1 -4.0 Peptide chain release factor 3 (NCBI) compare
Rru_A0616 -2.1 -5.3 photosynthetic complex assembly protein (NCBI) compare
Rru_A0619 -2.0 -1.1 Magnesium protoporphyrin O-methyltransferase (NCBI) compare
Rru_A3428 -2.0 -7.7 Tryptophan synthase (NCBI) compare
Rru_A3427 -2.0 -11.6 Tryptophan synthase, beta chain (NCBI) compare
Rru_A2978 -2.0 -5.9 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A1019 -2.0 -3.3 FAD dependent oxidoreductase (NCBI) compare
Rru_A3009 -2.0 -2.4 Aminotransferase class-III (NCBI) compare
Rru_A0671 -2.0 -3.2 cobalamin synthesis CobW protein (NCBI) compare
Rru_A2398 -1.9 -10.1 Pyruvate-ferredoxin (flavodoxin) oxidoreductase (NCBI) compare
Rru_A2936 -1.9 -8.7 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A3079 -1.9 -4.1 3-hydroxybutyryl-CoA dehydrogenase (NCBI) compare
Rru_A3393 -1.9 -2.7 Penicillin-binding protein 1A (NCBI) compare
Rru_A1895 -1.9 -1.3 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A2008 -1.9 -10.7 Thiamine biosynthesis protein ThiC (NCBI) compare
Rru_A3377 -1.9 -1.2 Alpha/beta hydrolase fold (NCBI) compare
Rru_A0224 -1.9 -2.5 Protein of unknown function DUF160 (NCBI) compare
Rru_A2029 -1.9 -0.6 Serine O-acetyltransferase (NCBI) compare
Rru_A3766 -1.9 -2.8 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A3328 -1.8 -3.6 OmpA/MotB (NCBI) compare
Rru_A3173 -1.8 -4.7 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A3165 -1.8 -4.1 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A2167 -1.8 -5.3 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A0369 -1.7 -3.0 ATPase associated with various cellular activities, AAA_3 (NCBI) compare
Rru_A2400 -1.7 -7.2 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A0892 -1.7 -3.1 stress protein (NCBI) compare
Rru_A0614 -1.7 -4.8 hypothetical protein (NCBI) compare
Rru_A0629 -1.7 -3.7 Geranylgeranyl reductase (NCBI) compare
Rru_A0435 -1.7 -8.8 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A2411 -1.7 -5.4 Aminotransferase, class I and II (NCBI) compare
Rru_A2986 -1.7 -3.1 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A1309 -1.7 -4.6 acetoacetyl-CoA reductase (NCBI) compare
Rru_A2018 -1.7 -0.6 hypothetical protein (NCBI) compare
Rru_A1048 -1.7 -1.6 Protein of unknown function DUF465 (NCBI) compare
Rru_A1310 -1.7 -4.3 Acetyl-CoA C-acyltransferase (NCBI) compare
Rru_A2264 -1.6 -1.8 ferredoxin (NCBI) compare
Rru_A1898 -1.6 -1.4 SOS-response transcriptional repressor, LexA (NCBI) compare
Rru_A3397 -1.6 -1.3 hypothetical protein (NCBI) compare
Rru_A3549 -1.6 -5.3 Cobyric acid synthase CobQ (NCBI) compare
Rru_A2391 -1.6 -1.0 hypothetical protein (NCBI) compare
Rru_A0643 -1.6 -2.7 Protein of unknown function DUF152 (NCBI) compare
Rru_A3547 -1.6 -2.3 hypothetical protein (NCBI) compare
Rru_A1334 -1.6 -2.0 Ribose 5-phosphate isomerase B (NCBI) compare
Rru_A0496 -1.6 -1.9 Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI) compare
Rru_A3596 -1.6 -3.0 Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (NCBI) compare
Rru_A2049 -1.6 -4.2 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A0454 -1.6 -1.6 Leucyl aminopeptidase (NCBI) compare
Rru_A1692 -1.5 -2.4 S-adenosylmethionine decarboxylase related (NCBI) compare
Rru_A3190 -1.5 -1.6 Aspartate carbamoyltransferase (NCBI) compare
Rru_A3633 -1.5 -1.3 Thiamine monophosphate synthase (NCBI) compare
Rru_A1439 -1.5 -1.0 Putative FecR (NCBI) compare
Rru_A0032 -1.5 -2.0 TPR repeat (NCBI) compare
Rru_A1928 -1.5 -6.5 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A0372 -1.5 -2.4 hypothetical protein (NCBI) compare
Rru_A2773 -1.5 -1.9 hypothetical protein (NCBI) compare
Rru_A2980 -1.5 -3.9 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A0613 -1.5 -2.6 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A3688 -1.5 -3.6 ABC transporter component (NCBI) compare
Rru_A2987 -1.5 -2.3 hypothetical protein (NCBI) compare
Rru_A3139 -1.5 -3.5 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A0207 -1.5 -2.4 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A0753 -1.5 -4.7 Chaperone clpB (NCBI) compare
Rru_A3550 -1.5 -2.3 Cobyric acid synthase CobQ (NCBI) compare
Rru_A2267 -1.5 -4.9 Electron transfer flavoprotein beta-subunit (NCBI) compare
Rru_A3359 -1.4 -3.8 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A0515 -1.4 -1.6 HAD-superfamily subfamily IIA hydrolase (NCBI) compare
Rru_A1788 -1.4 -0.8 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A3157 -1.4 -2.5 hypothetical protein (NCBI) compare
Rru_A1669 -1.4 -1.9 Transcriptional Regulator, MerR family (NCBI) compare
Rru_A3539 -1.4 -4.4 GlnB (protein PII) uridylyltransferase, GlnD (NCBI) compare
Rru_A1441 -1.4 -1.1 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A2042 -1.4 -2.8 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) compare
Rru_A3797 -1.4 -2.7 2-polyprenylphenol 6-hydroxylase (NCBI) compare
Rru_A1218 -1.4 -1.3 phage shock protein A, PspA (NCBI) compare
Rru_B0049 -1.4 -0.4 dTDP-4-dehydrorhamnose reductase (NCBI) compare
Rru_A0561 -1.4 -3.8 Cytochrome bd ubiquinol oxidase, subunit II (NCBI) compare
Rru_A3368 -1.4 -1.7 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A1318 -1.3 -3.0 hypothetical protein (NCBI) compare
Rru_A1454 -1.3 -0.9 Phage Tail Collar (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in carbon source experiments

For carbon source Hexanoic acid across organisms