Experiment set3IT007 for Herbaspirillum seropedicae SmR1
L-Rhamnose monohydrate carbon source
Group: carbon sourceMedia: NFbHP_noCarbon + L-Rhamnose monohydrate (5 g/L), pH=6.5
Culturing: HerbieS_ML4, flask, Aerobic, at 30 (C), shaken=120 rpm
Growth: about 5.4 generations
By: Thalita Tuleski on 19-May-16
Specific Phenotypes
For 8 genes in this experiment
For carbon source L-Rhamnose monohydrate in Herbaspirillum seropedicae SmR1
For carbon source L-Rhamnose monohydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| L-rhamnose utilization | 8 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose and glucuronate interconversions
- Fructose and mannose metabolism
- Galactose metabolism
- Inositol phosphate metabolism
- Pyruvate metabolism
- Biosynthesis of ansamycins
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-rhamnose degradation I | 5 | 4 | 3 |
| L-lactaldehyde degradation (aerobic) | 2 | 1 | 1 |
| methylglyoxal degradation V | 3 | 2 | 1 |
| superpathway of fucose and rhamnose degradation | 12 | 6 | 4 |
| methylglyoxal degradation IV | 3 | 1 | 1 |
| lactate biosynthesis (archaea) | 5 | 2 | 1 |
| superpathway of methylglyoxal degradation | 8 | 4 | 1 |
| L-rhamnose degradation II | 8 | 2 | 1 |