Experiment set3IT007 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Erythromycin 7e-05 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS16555 +1.4 1.8 DNA translocase FtsK compare
BBR_RS13125 +1.1 2.2 ABC transporter permease compare
BBR_RS14000 +0.8 4.2 hypothetical protein compare
BBR_RS13830 +0.8 1.3 DUF4191 domain-containing protein compare
BBR_RS18130 +0.8 7.2 glucokinase compare
BBR_RS10755 +0.8 4.6 adenylosuccinate synthase compare
BBR_RS12310 +0.8 1.2 signal recognition particle protein compare
BBR_RS18695 +0.8 6.3 PRD domain-containing protein compare
BBR_RS11210 +0.7 6.6 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS16105 +0.7 3.8 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
BBR_RS18745 +0.7 0.9 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS18700 +0.7 6.0 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS12370 +0.7 0.9 cell division protein compare
BBR_RS18985 +0.7 6.5 4-alpha-glucanotransferase compare
BBR_RS11205 +0.7 2.1 HPr family phosphocarrier protein compare
BBR_RS12910 +0.6 5.8 galactokinase compare
BBR_RS14485 +0.6 4.2 DUF3000 domain-containing protein compare
BBR_RS12500 +0.6 0.9 sugar ABC transporter permease compare
BBR_RS15915 +0.6 0.7 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS13215 +0.6 0.8 hypothetical protein compare
BBR_RS16020 +0.6 1.2 hypothetical protein compare
BBR_RS18645 +0.6 4.9 DNA-binding response regulator compare
BBR_RS16810 +0.6 4.7 aldose 1-epimerase compare
BBR_RS13625 +0.6 2.3 transcription antitermination factor NusB compare
BBR_RS14985 +0.5 1.9 ATP-dependent DNA helicase PcrA compare
BBR_RS16150 +0.5 3.7 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS15665 +0.5 1.9 preprotein translocase subunit YajC compare
BBR_RS20840 +0.5 1.5 hypothetical protein compare
BBR_RS18120 +0.5 0.9 hypothetical protein compare
BBR_RS19640 +0.5 0.6 phosphoesterase compare
BBR_RS19905 +0.5 0.7 methionine--tRNA ligase compare
BBR_RS14880 +0.5 3.1 ATP-dependent helicase compare
BBR_RS20925 +0.5 1.1 amino acid permease compare
BBR_RS18485 +0.5 2.6 IS30 family transposase compare
BBR_RS20800 +0.5 1.1 hypothetical protein compare
BBR_RS13910 +0.5 0.5 arginine repressor compare
BBR_RS20475 +0.4 4.1 KH domain-containing protein compare
BBR_RS12720 +0.4 1.0 hypothetical protein compare
BBR_RS16675 +0.4 1.8 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS11500 +0.4 3.7 glycosyltransferase family 2 protein compare
BBR_RS14220 +0.4 2.7 phosphomannomutase compare
BBR_RS14490 +0.4 2.6 ribonuclease D compare
BBR_RS16170 +0.4 1.2 hypothetical protein compare
BBR_RS10750 +0.4 3.7 class II fructose-bisphosphate aldolase compare
BBR_RS16940 +0.4 1.4 hypothetical protein compare
BBR_RS17775 +0.4 2.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS20480 +0.4 0.4 membrane protein compare
BBR_RS17680 +0.4 1.6 hypothetical protein compare
BBR_RS16855 +0.4 1.2 NUDIX domain-containing protein compare
BBR_RS15055 +0.4 1.0 hypothetical protein compare
BBR_RS19390 +0.4 0.8 hypothetical protein compare
BBR_RS20955 +0.4 0.5 hypothetical protein compare
BBR_RS14575 +0.4 1.6 YraN family protein compare
BBR_RS13675 +0.4 2.7 glutaredoxin-like protein compare
BBR_RS18035 +0.4 1.2 oligoribonuclease compare
BBR_RS17440 +0.4 0.9 DUF3027 domain-containing protein compare
BBR_RS20085 +0.4 2.8 histidine phosphatase family protein compare
BBR_RS15930 +0.4 1.6 RNA polymerase sigma factor compare
BBR_RS20805 +0.4 2.1 hypothetical protein compare
BBR_RS15150 +0.4 2.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BBR_RS15685 +0.4 2.8 hypothetical protein compare
BBR_RS14370 +0.4 1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS12600 +0.3 1.8 serine acetyltransferase compare
BBR_RS20555 +0.3 0.8 hypothetical protein compare
BBR_RS18315 +0.3 1.8 hypothetical protein compare
BBR_RS17165 +0.3 2.5 tRNA dihydrouridine synthase DusB compare
BBR_RS20980 +0.3 0.9 hypothetical protein compare
BBR_RS12905 +0.3 0.9 galactose-1-phosphate uridylyltransferase compare
BBR_RS19370 +0.3 1.7 type I polyketide synthase compare
BBR_RS13720 +0.3 1.7 hypothetical protein compare
BBR_RS13325 +0.3 1.6 hypothetical protein compare
BBR_RS14945 +0.3 2.0 peptidase E compare
BBR_RS12775 +0.3 1.7 hypothetical protein compare
BBR_RS20060 +0.3 2.5 DUF624 domain-containing protein compare
BBR_RS16250 +0.3 1.3 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS18475 +0.3 3.0 DUF4981 domain-containing protein compare
BBR_RS15570 +0.3 2.0 branched-chain amino acid transport system II carrier protein compare
BBR_RS12840 +0.3 2.3 DUF4916 domain-containing protein compare
BBR_RS21155 +0.3 2.0 hypothetical protein compare
BBR_RS15865 +0.3 1.6 GNAT family N-acetyltransferase compare
BBR_RS13330 +0.3 1.6 hypothetical protein compare
BBR_RS14335 +0.3 1.3 hypothetical protein compare
BBR_RS16145 +0.3 1.7 hypothetical protein compare
BBR_RS15795 +0.3 1.1 phosphoribosyl-ATP diphosphatase compare
BBR_RS15675 +0.3 1.7 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS20695 +0.3 1.1 hypothetical protein compare
BBR_RS16100 +0.3 1.5 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein compare
BBR_RS18470 +0.3 2.3 MFS transporter compare
BBR_RS14965 +0.3 1.0 DUF2975 domain-containing protein compare
BBR_RS10770 +0.3 2.0 CrcB family protein compare
BBR_RS20430 +0.3 0.6 hypothetical protein compare
BBR_RS13455 +0.3 1.0 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS14620 +0.3 2.0 proline iminopeptidase compare
BBR_RS10765 +0.3 2.5 hypothetical protein compare
BBR_RS12295 +0.3 0.5 RNA-binding protein compare
BBR_RS14660 +0.3 0.7 transcriptional regulator compare
BBR_RS14500 +0.3 2.0 hypothetical protein compare
BBR_RS14535 +0.3 1.7 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS11395 +0.3 1.2 DNA-binding protein compare
BBR_RS21000 +0.3 0.9 hypothetical protein compare
BBR_RS21040 +0.3 0.8 transcription factor WhiB compare
BBR_RS17295 +0.3 1.0 RNA-binding protein compare
BBR_RS21100 +0.3 1.0 hypothetical protein compare
BBR_RS10640 +0.3 2.4 alpha/beta hydrolase compare
BBR_RS10565 +0.3 2.5 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS16400 +0.3 0.8 hypothetical protein compare
BBR_RS12880 +0.3 1.8 Crp/Fnr family transcriptional regulator compare
BBR_RS17940 +0.3 1.7 large conductance mechanosensitive channel protein MscL compare
BBR_RS15045 +0.3 1.7 histidine phosphatase family protein compare
BBR_RS15560 +0.2 1.7 aminotransferase class V-fold PLP-dependent enzyme compare
BBR_RS17290 +0.2 1.6 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS14130 +0.2 0.5 septum formation initiator family protein compare
BBR_RS19070 +0.2 0.3 50S ribosomal protein L33 compare
BBR_RS20065 +0.2 2.0 carbohydrate ABC transporter permease compare
BBR_RS18320 +0.2 1.3 hypothetical protein compare
BBR_RS14550 +0.2 1.7 hypothetical protein compare
BBR_RS13550 +0.2 1.5 DUF47 domain-containing protein compare
BBR_RS10900 +0.2 0.4 molecular chaperone DnaK compare
BBR_RS17085 +0.2 1.7 KR domain-containing protein compare
BBR_RS13590 +0.2 1.3 hypothetical protein compare
BBR_RS14710 +0.2 1.5 hypothetical protein compare
BBR_RS14020 +0.2 0.9 TrkA family potassium uptake protein compare
BBR_RS20105 +0.2 2.1 YhgE/Pip domain-containing protein compare
BBR_RS15015 +0.2 1.2 cytidine deaminase compare
BBR_RS13535 +0.2 1.4 MerR family DNA-binding transcriptional regulator compare
BBR_RS17380 +0.2 1.7 hypothetical protein compare
BBR_RS15525 +0.2 1.6 RNase adapter RapZ compare
BBR_RS14750 +0.2 1.4 serine/threonine protein kinase compare
BBR_RS16570 +0.2 1.5 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
BBR_RS12865 +0.2 2.0 S9 family peptidase compare
BBR_RS16360 +0.2 1.6 sugar ABC transporter substrate-binding protein compare
BBR_RS13730 +0.2 1.7 hypothetical protein compare
BBR_RS14665 +0.2 1.5 MATE family efflux transporter compare
BBR_RS20545 +0.2 1.4 hypothetical protein compare
BBR_RS13225 +0.2 1.5 MurR/RpiR family transcriptional regulator compare
BBR_RS21140 +0.2 1.3 hypothetical protein compare
BBR_RS20815 +0.2 1.2 potassium transporter Trk compare
BBR_RS15680 +0.2 1.4 succinate--CoA ligase subunit alpha compare
BBR_RS14105 +0.2 1.5 N-acetyltransferase compare
BBR_RS20890 +0.2 1.2 hypothetical protein compare
BBR_RS13220 +0.2 1.3 hypothetical protein compare
BBR_RS13965 +0.2 1.5 thiazole synthase compare
BBR_RS14740 +0.2 0.8 YccF domain-containing protein compare
BBR_RS17395 +0.2 1.7 DUF349 domain-containing protein compare
BBR_RS13005 +0.2 1.9 aminopeptidase N compare
BBR_RS20855 +0.2 0.8 hypothetical protein compare
BBR_RS17275 +0.2 1.4 nitroreductase compare
BBR_RS16710 +0.2 1.0 hypothetical protein compare
BBR_RS20635 +0.2 1.1 hypothetical protein compare
BBR_RS20960 +0.2 0.8 hypothetical protein compare
BBR_RS16015 +0.2 1.0 DUF2089 domain-containing protein compare
BBR_RS19865 +0.2 1.5 endo-1,4-beta-xylanase compare
BBR_RS17190 +0.2 0.9 transcriptional regulator compare
BBR_RS16090 +0.2 1.1 phosphoribosyl-AMP cyclohydrolase compare
BBR_RS18620 +0.2 1.1 DUF4125 domain-containing protein compare
BBR_RS16385 +0.2 1.1 hypothetical protein compare
BBR_RS20915 +0.2 0.9 hypothetical protein compare
BBR_RS15970 +0.2 1.0 hypothetical protein compare
BBR_RS12305 +0.2 1.2 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS15010 +0.2 1.0 glutamine amidotransferase compare
BBR_RS15755 +0.2 0.5 hypothetical protein compare
BBR_RS14570 +0.2 1.3 ATP-binding protein compare
BBR_RS13155 +0.2 1.4 S-ribosylhomocysteine lyase compare
BBR_RS18640 +0.2 1.5 PspC domain-containing protein compare
BBR_RS12270 +0.2 1.1 hypothetical protein compare
BBR_RS15590 +0.2 1.3 molecular chaperone DnaJ compare
BBR_RS16280 +0.2 1.4 solute binding protein of ABC transporter system compare
BBR_RS15355 +0.2 0.7 DUF3800 domain-containing protein compare
BBR_RS20160 +0.2 1.8 Solute-binding protein of ABC transporter system for sugars compare
BBR_RS15715 +0.2 1.2 Cof-type HAD-IIB family hydrolase compare
BBR_RS18560 +0.2 1.4 hypothetical protein compare
BBR_RS11180 +0.2 1.6 phosphatase PAP2 family protein compare
BBR_RS13210 +0.2 1.1 anion transporter compare
BBR_RS20845 +0.2 1.0 cupin compare
BBR_RS20010 +0.2 1.5 transposase compare
BBR_RS15565 +0.2 1.3 hypothetical protein compare
BBR_RS17840 +0.2 1.1 energy-coupling factor transporter transmembrane protein EcfT compare
BBR_RS14420 +0.2 0.9 ribosome silencing factor compare
BBR_RS12280 +0.2 1.5 aldo/keto reductase compare
BBR_RS12125 +0.2 1.1 transposase compare
BBR_RS14460 +0.2 1.4 amidohydrolase compare
BBR_RS17150 +0.2 0.9 YggT family protein compare
BBR_RS14425 +0.2 1.2 histidine phosphatase family protein compare
BBR_RS15505 +0.2 1.3 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS12645 +0.2 1.1 acyltransferase compare
BBR_RS21060 +0.2 0.9 hypothetical protein compare
BBR_RS12555 +0.2 1.0 protein-tyrosine-phosphatase compare
BBR_RS11550 +0.2 1.3 hypothetical protein compare
BBR_RS19800 +0.2 1.5 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS11510 +0.2 0.6 signal recognition particle-docking protein FtsY compare
BBR_RS18170 +0.2 0.5 dihydropteroate synthase compare
BBR_RS15840 +0.2 1.2 VanZ family protein compare
BBR_RS17220 +0.2 1.0 thiamine-binding protein compare
BBR_RS17900 +0.2 1.4 glutamate--cysteine ligase compare
BBR_RS12990 +0.2 1.3 4-hydroxy-tetrahydrodipicolinate reductase compare
BBR_RS13955 +0.2 1.3 argininosuccinate lyase compare
BBR_RS20095 +0.2 1.4 NADPH-dependent oxidoreductase compare
BBR_RS14815 +0.2 1.1 D-hexose-6-phosphate mutarotase compare
BBR_RS14780 +0.2 0.9 XRE family transcriptional regulator compare
BBR_RS18770 +0.2 1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Erythromycin across organisms