Experiment set3IT006 for Pantoea sp. MT58

Compare to:

Defined media control, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -5.6 -3.8 Tol-Pal system protein TolB compare
IAI47_17185 -3.6 -9.3 RNA polymerase factor sigma-54 compare
IAI47_15635 -3.4 -4.6 RNA polymerase-binding protein DksA compare
IAI47_08085 -3.3 -9.2 helix-turn-helix domain-containing protein compare
IAI47_00780 -3.3 -6.4 6-phosphofructokinase compare
IAI47_09240 -3.1 -2.2 HTH-type transcriptional regulator CysB compare
IAI47_16015 -3.1 -8.1 3-isopropylmalate dehydratase small subunit compare
IAI47_03725 -3.1 -11.9 phosphoglycerate dehydrogenase compare
IAI47_00910 -3.0 -10.9 acetylglutamate kinase compare
IAI47_12865 -3.0 -13.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_05070 -3.0 -1.3 outer membrane protein assembly factor BamB compare
IAI47_07165 -2.9 -3.4 exodeoxyribonuclease I compare
IAI47_16350 -2.9 -11.0 phosphoserine phosphatase compare
IAI47_16005 -2.8 -14.8 3-isopropylmalate dehydrogenase compare
IAI47_17220 -2.8 -22.5 glutamate synthase large subunit compare
IAI47_17225 -2.8 -18.4 sulfite reductase subunit alpha compare
IAI47_09165 -2.8 -12.4 tryptophan synthase subunit alpha compare
IAI47_01035 -2.7 -17.6 dihydroxy-acid dehydratase compare
IAI47_14945 -2.7 -5.1 pyrroline-5-carboxylate reductase compare
IAI47_00905 -2.7 -12.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_09580 -2.7 -4.9 FNR family transcription factor compare
IAI47_01050 -2.7 -17.3 ketol-acid reductoisomerase compare
IAI47_07090 -2.7 -12.0 histidinol dehydrogenase compare
IAI47_17965 -2.7 -15.6 glucose-6-phosphate isomerase compare
IAI47_04120 -2.7 -19.3 GTP diphosphokinase compare
IAI47_07065 -2.6 -12.2 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_16210 -2.6 -12.3 homoserine kinase compare
IAI47_07070 -2.6 -8.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_09170 -2.6 -14.4 tryptophan synthase subunit beta compare
IAI47_00915 -2.6 -16.5 argininosuccinate synthase compare
IAI47_16010 -2.6 -16.2 3-isopropylmalate dehydratase large subunit compare
IAI47_18040 -2.6 -17.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_01030 -2.6 -15.2 branched-chain amino acid transaminase compare
IAI47_16830 -2.5 -15.6 ornithine carbamoyltransferase compare
IAI47_16115 -2.5 -18.5 carbamoyl-phosphate synthase large subunit compare
IAI47_18830 -2.5 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_00895 -2.5 -16.4 phosphoenolpyruvate carboxylase compare
IAI47_13900 -2.5 -16.1 asparagine synthase B compare
IAI47_03975 -2.5 -14.1 amino-acid N-acetyltransferase compare
IAI47_07075 -2.5 -11.6 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_16120 -2.5 -12.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_03860 -2.4 -13.7 diaminopimelate decarboxylase compare
IAI47_09175 -2.4 -12.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00920 -2.4 -14.1 argininosuccinate lyase compare
IAI47_10520 -2.4 -4.7 pyridoxamine 5'-phosphate oxidase compare
IAI47_01040 -2.4 -11.4 threonine ammonia-lyase, biosynthetic compare
IAI47_06235 -2.4 -9.1 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_07085 -2.4 -13.9 histidinol-phosphate transaminase compare
IAI47_00890 -2.4 -12.4 methylenetetrahydrofolate reductase compare
IAI47_00460 -2.4 -2.9 glutamate--ammonia ligase compare
IAI47_16205 -2.3 -9.2 threonine synthase compare
IAI47_16000 -2.3 -15.7 2-isopropylmalate synthase compare
IAI47_04895 -2.3 -5.3 pyridoxine 5'-phosphate synthase compare
IAI47_18015 -2.3 -13.1 homoserine O-succinyltransferase compare
IAI47_05440 -2.3 -14.2 cysteine synthase A compare
IAI47_09180 -2.3 -10.8 anthranilate phosphoribosyltransferase compare
IAI47_07060 -2.3 -12.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_16215 -2.2 -14.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_15115 -2.2 -11.9 glutamate-5-semialdehyde dehydrogenase compare
IAI47_13770 -2.2 -12.3 citrate synthase compare
IAI47_00600 -2.2 -12.1 orotate phosphoribosyltransferase compare
IAI47_12705 -2.2 -12.1 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_07080 -2.2 -11.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_13695 -2.2 -0.9 colicin uptake protein TolR compare
IAI47_12215 -2.2 -12.6 dihydroorotase compare
IAI47_15120 -2.2 -9.2 glutamate 5-kinase compare
IAI47_00515 -2.1 -3.2 DNA-directed RNA polymerase subunit omega compare
IAI47_00880 -2.1 -13.5 cystathionine gamma-synthase compare
IAI47_05155 -2.1 -14.5 polyphosphate kinase 1 compare
IAI47_09190 -2.1 -12.0 anthranilate synthase component 1 compare
IAI47_16870 -2.1 -8.1 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_16080 -2.1 -8.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_09275 -2.0 -9.4 orotidine-5'-phosphate decarboxylase compare
IAI47_13690 -2.0 -0.9 cell envelope integrity protein TolA compare
IAI47_07095 -2.0 -9.0 ATP phosphoribosyltransferase compare
IAI47_12885 -2.0 -9.4 pyruvate formate lyase 1-activating protein compare
IAI47_16860 -2.0 -12.9 aspartate carbamoyltransferase compare
IAI47_05275 -2.0 -6.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_06275 -1.9 -13.9 amidophosphoribosyltransferase compare
IAI47_09055 -1.9 -12.8 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_08445 -1.8 -1.8 Holliday junction branch migration protein RuvA compare
IAI47_05180 -1.8 -11.5 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_05425 -1.8 -6.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_12880 -1.8 -14.1 formate C-acetyltransferase compare
IAI47_04930 -1.8 -14.2 phosphoribosylformylglycinamidine synthase compare
IAI47_18055 -1.8 -7.6 DNA-binding protein HU-alpha compare
IAI47_14350 -1.8 -8.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_09010 -1.7 -8.0 formyltetrahydrofolate deformylase compare
IAI47_14075 -1.7 -3.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_04410 -1.6 -11.1 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_14730 -1.6 -2.1 exodeoxyribonuclease VII small subunit compare
IAI47_12915 -1.6 -9.0 leucine-responsive transcriptional regulator Lrp compare
IAI47_06320 -1.6 -7.7 phosphate acetyltransferase compare
IAI47_05420 -1.6 -1.2 PTS glucose transporter subunit IIA compare
IAI47_04160 -1.6 -9.5 phosphoadenylyl-sulfate reductase compare
IAI47_09040 -1.5 -2.0 NAD-dependent epimerase compare
IAI47_15970 -1.5 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_18045 -1.5 -9.7 phosphoribosylamine--glycine ligase compare
IAI47_09185 -1.5 -3.0 glutamine amidotransferase compare
IAI47_03820 -1.5 -4.1 site-specific tyrosine recombinase XerD compare
IAI47_11735 -1.5 -3.9 histidinol-phosphatase compare
IAI47_13700 -1.4 -3.4 Tol-Pal system protein TolQ compare
IAI47_03595 -1.3 -6.0 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_04835 -1.3 -6.3 ATP-dependent RNA helicase SrmB compare
IAI47_15540 -1.3 -6.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_00300 -1.3 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_13495 -1.2 -5.8 GTP 3',8-cyclase MoaA compare
IAI47_03855 -1.2 -6.6 LysR family transcriptional regulator compare
IAI47_02695 -1.2 -8.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_13145 -1.2 -6.9 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_03375 -1.2 -7.0 peptide chain release factor 3 compare
IAI47_17020 -1.2 -3.3 30S ribosome-binding factor RbfA compare
IAI47_07475 -1.2 -1.1 hypothetical protein compare
IAI47_00110 -1.2 -5.8 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_06325 -1.2 -4.8 acetate kinase compare
IAI47_03685 -1.2 -6.4 erythrose-4-phosphate dehydrogenase compare
IAI47_13745 -1.1 -3.5 2-oxoglutarate dehydrogenase E1 component compare
IAI47_06940 -1.1 -1.2 tyrosine-protein kinase Wzc compare
IAI47_01365 -1.1 -1.6 inorganic phosphate transporter PitA compare
IAI47_21235 -1.1 -2.8 hypothetical protein compare
IAI47_18410 -1.1 -2.9 diaminopimelate epimerase compare
IAI47_07550 -1.1 -1.7 tRNA-Asn compare
IAI47_09395 -1.1 -3.7 phage shock protein PspA compare
IAI47_08705 -1.1 -8.2 carboxy terminal-processing peptidase compare
IAI47_10840 -1.1 -3.9 pyruvate kinase PykF compare
IAI47_12175 -1.1 -2.7 anti-sigma-28 factor FlgM compare
IAI47_13475 -1.1 -3.8 molybdopterin synthase catalytic subunit MoaE compare
IAI47_18400 -1.0 -2.1 tyrosine recombinase XerC compare
IAI47_05435 -1.0 -3.8 hypothetical protein compare
IAI47_11310 -1.0 -2.9 redox-regulated ATPase YchF compare
IAI47_16095 -1.0 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_01180 -1.0 -2.0 prolyl oligopeptidase family serine peptidase compare
IAI47_12030 -1.0 -7.8 PTS glucose transporter subunit IIBC compare
IAI47_00455 -1.0 -6.0 nitrogen regulation protein NR(II) compare
IAI47_13140 -1.0 -6.1 molybdopterin molybdotransferase MoeA compare
IAI47_01025 -1.0 -5.4 acetolactate synthase 2 small subunit compare
IAI47_04155 -1.0 -7.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_18315 -0.9 -4.9 HTH-type transcriptional regulator MetR compare
IAI47_18530 -0.9 -2.2 thioredoxin TrxA compare
IAI47_17035 -0.9 -1.7 ribosome maturation factor RimP compare
IAI47_15990 -0.9 -8.2 acetolactate synthase 3 large subunit compare
IAI47_13480 -0.9 -3.0 molybdopterin synthase sulfur carrier subunit compare
IAI47_00900 -0.9 -7.3 acetylornithine deacetylase compare
IAI47_13885 -0.9 -1.7 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_09305 -0.9 -2.1 cyclic di-GMP phosphodiesterase compare
IAI47_21880 -0.9 -0.9 ParA family protein compare
IAI47_12570 -0.9 -1.3 tRNA-Ser compare
IAI47_12945 -0.9 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_00410 -0.9 -6.7 molybdenum cofactor guanylyltransferase MobA compare
IAI47_04870 -0.8 -3.6 elongation factor 4 compare
IAI47_11830 -0.8 -5.4 muramoyltetrapeptide carboxypeptidase compare
IAI47_18675 -0.8 -4.4 MarR family transcriptional regulator compare
IAI47_04190 -0.8 -4.9 adenylyl-sulfate kinase compare
IAI47_18310 -0.8 -6.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_00465 -0.8 -1.8 ribosome-dependent GTPase TypA compare
IAI47_04150 -0.8 -6.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_13485 -0.8 -3.3 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_21035 -0.8 -2.5 TetR/AcrR family transcriptional regulator compare
IAI47_09245 -0.8 -2.3 YmiA family putative membrane protein compare
IAI47_10935 -0.8 -4.3 vitamin B12 ABC transporter ATP-binding protein BtuD compare
IAI47_09855 -0.8 -2.7 DUF2384 domain-containing protein compare
IAI47_04265 -0.8 -5.1 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_09235 -0.7 -1.3 type I DNA topoisomerase compare
IAI47_17000 -0.7 -5.5 lipoprotein NlpI compare
IAI47_10320 -0.7 -1.0 Rrf2 family transcriptional regulator compare
IAI47_17560 -0.7 -0.7 ROK family transcriptional regulator compare
IAI47_00450 -0.7 -5.7 nitrogen regulation protein NR(I) compare
IAI47_14400 -0.7 -5.8 copper-exporting P-type ATPase CopA compare
IAI47_08305 -0.7 -4.2 chemotaxis protein CheW compare
IAI47_06055 -0.7 -3.1 tRNA-Arg compare
IAI47_04705 -0.7 -1.3 hypothetical protein compare
IAI47_02380 -0.7 -1.5 DNA-binding transcriptional regulator Fis compare
IAI47_15995 -0.7 -1.0 leu operon leader peptide compare
IAI47_15985 -0.7 -4.4 acetolactate synthase small subunit compare
IAI47_02040 -0.7 -3.2 peptidylprolyl isomerase compare
IAI47_16220 -0.7 -2.2 thr operon leader peptide compare
IAI47_07010 -0.7 -1.8 ABC transporter permease compare
IAI47_08135 -0.7 -4.8 flagellar export chaperone FliS compare
IAI47_16930 -0.7 -3.5 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_01020 -0.7 -5.3 acetolactate synthase 2 catalytic subunit compare
IAI47_04260 -0.7 -5.6 nitrate reductase subunit beta compare
IAI47_16925 -0.7 -5.8 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_10775 -0.7 -2.6 ribonuclease T compare
IAI47_10825 -0.6 -0.9 tRNA-Val compare
IAI47_04270 -0.6 -4.3 respiratory nitrate reductase subunit gamma compare
IAI47_00485 -0.6 -4.5 fatty acid biosynthesis protein FabY compare
IAI47_04255 -0.6 -5.7 nitrate reductase subunit alpha compare
IAI47_10890 -0.6 -5.5 FAD-binding oxidoreductase compare
IAI47_04425 -0.6 -3.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_04175 -0.6 -4.6 uroporphyrinogen-III C-methyltransferase compare
IAI47_12875 -0.6 -4.2 formate transporter FocA compare
IAI47_17005 -0.6 -3.5 polyribonucleotide nucleotidyltransferase compare
IAI47_10945 -0.6 -3.2 vitamin B12 ABC transporter permease BtuC compare
IAI47_08410 -0.6 -3.2 carboxy-S-adenosyl-L-methionine synthase CmoA compare
IAI47_00770 -0.6 -0.8 general stress protein compare
IAI47_06245 -0.6 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_11450 -0.6 -2.3 ankyrin repeat domain-containing protein compare
IAI47_06965 -0.6 -1.4 glycosyltransferase family 2 protein compare
IAI47_07175 -0.6 -4.5 FUSC family protein compare
IAI47_01475 -0.6 -3.6 MurR/RpiR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in no stress control experiments

For no stress control Sodium nitrate across organisms