Experiment set3IT006 for Caulobacter crescentus NA1000

Compare to:

PYE with Spectinomycin dihydrochloride pentahydrate 0.08 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02387 +10.0 77.4 glutathione reductase compare
CCNA_00296 +5.2 34.9 phosphate regulon response regulator PhoB compare
CCNA_03824 +5.1 34.4 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_00389 +4.8 7.8 aminomethyltransferase family protein compare
CCNA_03384 +4.7 15.6 LSU ribosomal protein L31P compare
CCNA_00011 +4.4 9.0 chaperone protein DnaJ compare
CCNA_01964 +4.4 19.6 NADH dehydrogenase compare
CCNA_01583 +4.3 17.1 phosphate-binding protein compare
CCNA_00264 +4.1 26.5 C4-dicarboxylate transport protein compare
CCNA_02028 +3.8 3.8 NTF2 superfamily protein compare
CCNA_01751 +3.7 13.5 aminodeoxychorismate lyase compare
CCNA_02030 +3.4 6.0 hypothetical protein compare
CCNA_01780 +3.2 21.7 exopolyphosphatase compare
CCNA_03281 +3.0 24.9 AsnC-family transcriptional regulator compare
CCNA_02037 +3.0 20.1 ATP-dependent endopeptidase Lon compare
CCNA_02127 +2.9 16.5 oxacillin resistance-associated protein fmtC compare
CCNA_03129 +2.8 18.5 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01168 +2.8 2.8 3-ketoacyl-CoA thiolase compare
CCNA_02339 +2.7 16.3 methyltransferase compare
CCNA_01444 +2.6 12.5 poly(3-hydroxyalkanoate) polymerase compare
CCNA_01453 +2.5 9.6 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01815 +2.4 17.3 nitrogen assimilation regulatory protein NtrC compare
CCNA_02066 +2.4 12.7 phytoene/squalene synthase family protein compare
CCNA_03524 +2.4 14.1 di-/tripeptide transporter compare
CCNA_02576 +2.4 18.4 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_02151 +2.3 5.4 exodeoxyribonuclease VII small subunit compare
CCNA_01393 +2.2 16.4 soluble lytic murein transglycosylase compare
CCNA_01181 +2.2 13.5 hypothetical protein compare
CCNA_01553 +2.2 13.8 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_02026 +2.2 8.8 hypothetical protein compare
CCNA_02416 +2.2 14.6 DNA-binding protein HU compare
CCNA_02467 +2.2 12.6 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_02646 +2.2 5.5 cell division protein MraZ compare
CCNA_01525 +2.2 13.2 flagellar biosynthesis repressor flbT compare
CCNA_03453 +2.2 11.8 AcrR-family transcriptional regulator compare
CCNA_01252 +2.2 16.7 soluble lytic murein transglycosylase compare
CCNA_02243 +2.1 15.1 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_03030 +2.1 13.2 cytochrome c2 compare
CCNA_00846 +2.1 17.8 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_01593 +2.0 12.8 Xaa-pro aminopeptidase compare
CCNA_02133 +2.0 9.2 glucokinase compare
CCNA_00924 +2.0 2.3 MarR/EmrR family transcriptional regulator compare
CCNA_00892 +2.0 5.0 phosphoenolpyruvate-protein phosphotransferase PtsP compare
CCNA_02419 +2.0 7.1 TonB1 protein compare
CCNA_02447 +1.9 12.3 PspA/IM30 family regulatory protein compare
CCNA_00292 +1.9 5.3 phosphate transport system permease protein pstC compare
CCNA_00505 +1.9 11.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02021 +1.9 7.6 hypothetical protein compare
CCNA_01763 +1.9 12.7 multifunctional aminopeptidase compare
CCNA_01521 +1.9 12.4 hypothetical protein compare
CCNA_01712 +1.9 8.8 CopY/TcrY family transcriptional repressor compare
CCNA_01722 +1.9 4.7 hypothetical protein compare
CCNA_00013 +1.8 15.2 protein-PII uridylyltransferase compare
CCNA_01614 +1.8 2.8 hypothetical protein compare
CCNA_00255 +1.8 4.7 esterase compare
CCNA_02000 +1.8 4.2 SSU ribosomal protein S2P compare
CCNA_03612 +1.8 13.3 HTH XRE-family transcriptional regulator compare
CCNA_03858 +1.8 15.3 protein translocase subunit secB compare
CCNA_01730 +1.8 11.4 amidophosphoribosyltransferase compare
CCNA_03808 +1.8 13.3 organic solvent resistance transport system Ttg2C protein compare
CCNA_02250 +1.8 5.8 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_03961 +1.8 8.3 hypothetical protein compare
CCNA_02448 +1.8 12.2 hypothetical protein compare
CCNA_00684 +1.8 12.4 anti-sigma factor, ChrR-family compare
CCNA_01959 +1.8 4.7 3-dehydroquinate dehydratase compare
CCNA_02980 +1.8 13.5 tryptophan 2,3-dioxygenase compare
CCNA_00527 +1.8 12.2 hypothetical protein compare
CCNA_02171 +1.8 13.4 nucleoside permease nupC compare
CCNA_03955 +1.8 2.6 hypothetical protein compare
CCNA_00781 +1.8 13.9 two-component receiver protein CpdR compare
CCNA_01968 +1.8 6.3 pentapeptide repeats containing protein compare
CCNA_02732 +1.8 8.2 hypothetical protein compare
CCNA_03280 +1.8 16.1 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01655 +1.8 11.2 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03514 +1.7 11.6 cytochrome c oxidase assembly protein ctaG compare
CCNA_01728 +1.7 10.2 short chain dehydrogenase compare
CCNA_01801 +1.7 9.8 hypothetical protein compare
CCNA_01094 +1.7 4.7 hypothetical protein compare
CCNA_03062 +1.7 12.2 cell wall hydrolase family protein compare
CCNA_01814 +1.7 12.2 nitrogen regulation protein ntrB compare
CCNA_02025 +1.7 9.2 hypothetical protein compare
CCNA_02289 +1.7 14.1 MarR/EmrR family transcriptional regulator compare
CCNA_00027 +1.7 4.5 2OG-Fe(II) oxygenase compare
CCNA_01931 +1.7 12.5 TetR-family transcriptional regulator compare
CCNA_03807 +1.7 10.3 organic solvent resistance transport system Ttg2D protein compare
CCNA_01851 +1.7 14.2 quinol cytochrome oxidase polypeptide II compare
CCNA_03643 +1.7 2.6 succinate dehydrogenase membrane anchor subunit compare
CCNA_02619 +1.7 13.5 stomatin/prohibitin-related protein compare
CCNA_01242 +1.7 12.6 amino acid permease compare
CCNA_R0026 +1.7 2.2 tRNA-Gly compare
CCNA_00362 +1.7 6.2 zinc uptake regulation protein compare
CCNA_02103 +1.7 10.3 hypothetical protein compare
CCNA_01063 +1.7 9.3 UDP-perosamine 4-acetyl transferase compare
CCNA_02616 +1.6 11.2 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_00939 +1.6 7.6 MarR-family transcriptional regulator compare
CCNA_01526 +1.6 8.2 flagellar biosynthesis regulatory protein flaF compare
CCNA_01775 +1.6 6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_03951 +1.6 8.4 hypothetical protein compare
CCNA_01684 +1.6 9.8 phenylalanine-4-hydroxylase compare
CCNA_02552 +1.6 4.5 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_01186 +1.6 6.8 hypothetical protein compare
CCNA_02132 +1.6 5.9 LacI-family transcriptional regulator compare
CCNA_01058 +1.6 8.7 helix-turn-helix transcriptional regulator compare
CCNA_00073 +1.6 13.3 HemY domain membrane protein compare
CCNA_R0037 +1.6 6.6 tRNA-Glu compare
CCNA_01848 +1.6 11.8 quinol cytochrome oxidase polypeptide IV compare
CCNA_00756 +1.6 4.4 hypothetical protein compare
CCNA_01580 +1.6 8.5 M15 superfamily membrane peptidase compare
CCNA_01802 +1.6 7.1 hypothetical protein compare
CCNA_03271 +1.6 12.1 methionine gamma-lyase compare
CCNA_03936 +1.5 6.9 hypothetical protein compare
CCNA_01804 +1.5 11.1 glutathione peroxidase compare
CCNA_01059 +1.5 10.4 S-layer protein rsaA compare
CCNA_02617 +1.5 12.9 histidinol-phosphate aminotransferase compare
CCNA_01573 +1.5 8.7 ArsR-family transcriptional regulator compare
CCNA_02957 +1.5 5.4 ArsR-family transcriptional regulator compare
CCNA_01624 +1.5 4.1 orotate phosphoribosyltransferase compare
CCNA_01840 +1.5 12.2 MerR-family transcriptional regulator compare
CCNA_03806 +1.5 11.4 outer membrane lipoprotein compare
CCNA_01678 +1.5 9.1 arginine N-succinyltransferase, beta chain compare
CCNA_00471 +1.5 9.8 GDP-L-fucose synthase compare
CCNA_02942 +1.5 4.5 nucleoside-diphosphate-sugar epimerase compare
CCNA_02180 +1.5 2.9 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_00072 +1.5 10.7 hypothetical protein compare
CCNA_03214 +1.5 8.8 hypothetical protein compare
CCNA_03810 +1.5 9.7 organic solvent resistance transport system ATP-binding protein compare
CCNA_00291 +1.5 9.1 phosphate regulon sensor protein phoR compare
CCNA_02011 +1.5 3.5 methylmalonyl CoA epimerase compare
CCNA_00895 +1.5 7.1 hypothetical protein compare
CCNA_00998 +1.5 8.2 ROS/MUCR transcriptional regulator compare
CCNA_01235 +1.4 8.4 AcrR-family transcriptional regulator compare
CCNA_00207 +1.4 9.0 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
CCNA_00726 +1.4 10.3 acyl-CoA dehydrogenase compare
CCNA_02591 +1.4 4.9 glutaredoxin compare
CCNA_01913 +1.4 9.0 MarR-family transcriptional regulator compare
CCNA_01942 +1.4 8.5 Rrf2 family protein compare
CCNA_01826 +1.4 9.2 vitamin B12 receptor compare
CCNA_03012 +1.4 9.9 peroxiredoxin compare
CCNA_02077 +1.4 3.1 5'(3')-nucleotidase/polyphosphatase SurE compare
CCNA_03043 +1.4 8.1 type IV pilin protein pilA compare
CCNA_02728 +1.4 8.3 hypothetical protein compare
CCNA_00731 +1.4 7.9 DNA mismatch repair protein mutL compare
CCNA_00257 +1.4 6.1 adenosylhomocysteinase compare
CCNA_01690 +1.4 5.5 MAPEG family membrane protein compare
CCNA_03989 +1.4 11.5 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_00028 +1.4 5.8 TonB-dependent receptor compare
CCNA_01237 +1.4 1.1 hypothetical protein compare
CCNA_00354 +1.4 8.2 NlpC/P60 CHAP domain amidase protein compare
CCNA_02254 +1.4 5.3 isovaleryl-CoA dehydrogenase compare
CCNA_03371 +1.4 6.5 bacterioferritin compare
CCNA_00447 +1.4 7.6 chemotaxis protein cheD compare
CCNA_03325 +1.4 6.3 hypothetical protein compare
CCNA_00920 +1.3 4.3 hypothetical protein compare
CCNA_03464 +1.3 7.4 glycine cleavage system H protein compare
CCNA_00518 +1.3 8.7 LSU ribosomal protein L25P compare
CCNA_01447 +1.3 7.6 homoserine dehydrogenase compare
CCNA_01008 +1.3 10.6 urocanate hydratase compare
CCNA_01295 +1.3 7.4 integral membrane protein compare
CCNA_03893 +1.3 3.8 hypothetical protein compare
CCNA_00834 +1.3 7.5 flagellin FljM compare
CCNA_00803 +1.3 6.3 chemotaxis protein cheW compare
CCNA_01849 +1.3 9.2 quinol cytochrome oxidase polypeptide III compare
CCNA_00852 +1.3 5.7 TetR family transcriptional regulator compare
CCNA_02575 +1.3 4.6 hypothetical protein compare
CCNA_01995 +1.3 2.0 phosphatidate cytidylyltransferase compare
CCNA_03123 +1.3 9.3 ArsR-family transcriptional regulator compare
CCNA_02614 +1.3 8.1 fumarylacetoacetase superfamily protein compare
CCNA_00517 +1.3 2.0 peptidyl-tRNA hydrolase compare
CCNA_02729 +1.3 10.5 oligopeptide transporter compare
CCNA_03964 +1.3 3.2 hypothetical protein compare
CCNA_00847 +1.3 7.0 leucine-responsive regulatory protein compare
CCNA_02098 +1.3 8.8 molybdopterin-guanine dinucleotide biosynthesis protein A compare
CCNA_01603 +1.3 7.1 aspartate aminotransferase compare
CCNA_03718 +1.3 9.6 NADH-ubiquinone oxidoreductase subunit compare
CCNA_00206 +1.3 5.2 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A compare
CCNA_00506 +1.3 7.3 cytochrome b compare
CCNA_01371 +1.3 3.7 hypothetical protein compare
CCNA_01541 +1.3 8.5 LysR-family transcriptional regulator compare
CCNA_01979 +1.3 6.3 LexA repressor compare
CCNA_03809 +1.3 6.9 organic solvent resistance transport system permease compare
CCNA_00752 +1.3 8.7 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_01731 +1.3 6.6 colicin V production protein CvpA compare
CCNA_02546 +1.3 8.7 GGDEF/response regulator protein PleD compare
CCNA_02615 +1.3 6.4 homogentisate 1,2-dioxygenase compare
CCNA_02004 +1.3 2.9 SOS-induced inhibitor of cell division SidA compare
CCNA_01279 +1.3 5.7 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_02287 +1.3 7.9 TetR-family transcriptional regulator compare
CCNA_01438 +1.3 7.1 heme O monooxygenase compare
CCNA_02324 +1.3 8.0 heat shock protein 33 hsp33 compare
CCNA_01414 +1.3 8.9 3-hydroxyisobutyryl-CoA hydrolase compare
CCNA_01193 +1.3 8.8 amylosucrase compare
CCNA_01742 +1.3 5.4 hypothetical protein compare
CCNA_00805 +1.3 1.4 GTP-binding protein YihA compare
CCNA_01433 +1.3 4.5 integration host factor alpha-subunit compare
CCNA_01556 +1.2 1.9 LacI-family transcriptional regulator compare
CCNA_03479 +1.2 7.8 MarR-family transcriptional regulator compare
CCNA_01813 +1.2 7.4 tRNA-dihydrouridine synthase compare
CCNA_01011 +1.2 7.3 imidazolonepropionase compare
CCNA_02270 +1.2 4.5 MarR-family transcriptional regulator compare
CCNA_01629 +1.2 7.7 signal peptidase I compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Caulobacter crescentus NA1000

For stress Spectinomycin dihydrochloride pentahydrate across organisms