Experiment set3IT006 for Ralstonia sp. UNC404CL21Col

Compare to:

root sample 6; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS01450 -5.0 -3.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS21795 -4.4 -3.0 NUDIX domain-containing protein compare
ABZR87_RS05580 -4.2 -2.7 diaminopimelate epimerase compare
ABZR87_RS08695 -4.1 -7.4 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS02655 -4.0 -5.5 anti-sigma factor compare
ABZR87_RS17270 -3.9 -1.3 hypothetical protein compare
ABZR87_RS14115 -3.7 -3.5 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS08630 -3.7 -2.5 dihydroorotase compare
ABZR87_RS05990 -3.6 -2.0 AraC family transcriptional regulator compare
ABZR87_RS02640 -3.6 -7.7 diaminopimelate decarboxylase compare
ABZR87_RS20785 -3.5 -1.2 DUF2783 domain-containing protein compare
ABZR87_RS20680 -3.4 -2.7 SDR family oxidoreductase compare
ABZR87_RS20075 -3.3 -1.9 DUF2892 domain-containing protein compare
ABZR87_RS11330 -3.3 -2.8 transcriptional repressor LexA compare
ABZR87_RS03435 -3.3 -4.9 type II secretion system protein GspL compare
ABZR87_RS20370 -3.3 -1.1 ABC transporter ATP-binding protein compare
ABZR87_RS03410 -3.2 -4.4 type II secretion system major pseudopilin GspG compare
ABZR87_RS20440 -3.2 -1.1 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS13645 -3.1 -1.1 hypothetical protein compare
ABZR87_RS02160 -3.1 -3.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS01760 -3.1 -1.0 PP0621 family protein compare
ABZR87_RS11970 -3.1 -1.5 hypothetical protein compare
ABZR87_RS21950 -3.0 -5.6 hypothetical protein compare
ABZR87_RS22920 -3.0 -2.1 phosphogluconate dehydratase compare
ABZR87_RS00340 -3.0 -1.9 50S ribosomal protein L33 compare
ABZR87_RS14330 -2.9 -1.0 hypothetical protein compare
ABZR87_RS17595 -2.9 -1.4 hypothetical protein compare
ABZR87_RS22970 -2.9 -7.8 cystathionine gamma-synthase family protein compare
ABZR87_RS03420 -2.9 -1.0 type II secretion system minor pseudopilin GspI compare
ABZR87_RS14190 -2.9 -8.7 DUF2589 domain-containing protein compare
ABZR87_RS11980 -2.9 -1.0 cold-shock protein compare
ABZR87_RS13790 -2.9 -3.9 chorismate synthase compare
ABZR87_RS15275 -2.8 -1.3 hypothetical protein compare
ABZR87_RS02590 -2.8 -3.9 3-dehydroquinate synthase compare
ABZR87_RS02155 -2.8 -5.4 anthranilate phosphoribosyltransferase compare
ABZR87_RS07430 -2.8 -1.3 FmdB family zinc ribbon protein compare
ABZR87_RS22325 -2.8 -3.1 H-NS histone family protein compare
ABZR87_RS15065 -2.8 -2.8 TMEM165/GDT1 family protein compare
ABZR87_RS14500 -2.8 -8.0 tryptophan synthase subunit beta compare
ABZR87_RS09465 -2.8 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS08990 -2.7 -1.9 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS05200 -2.7 -11.3 homoserine O-acetyltransferase compare
ABZR87_RS14540 -2.7 -3.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS05100 -2.7 -1.8 RNA polymerase-binding protein DksA compare
ABZR87_RS10175 -2.6 -3.1 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS15715 -2.6 -4.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS16165 -2.6 -0.9 anti-sigma factor compare
ABZR87_RS02595 -2.6 -7.4 shikimate kinase compare
ABZR87_RS00625 -2.6 -1.2 hypothetical protein compare
ABZR87_RS01810 -2.6 -2.5 glutamate 5-kinase compare
ABZR87_RS12965 -2.6 -2.5 tail protein X compare
ABZR87_RS09625 -2.5 -6.3 CobD/CbiB family protein compare
ABZR87_RS10275 -2.5 -1.6 DUF5818 domain-containing protein compare
ABZR87_RS02140 -2.5 -10.4 anthranilate synthase component I compare
ABZR87_RS14490 -2.5 -3.8 tryptophan synthase subunit alpha compare
ABZR87_RS03865 -2.5 -6.8 GntR family transcriptional regulator compare
ABZR87_RS00325 -2.4 -1.7 peptidylprolyl isomerase compare
ABZR87_RS04785 -2.4 -5.7 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS09820 -2.4 -2.1 RidA family protein compare
ABZR87_RS00580 -2.4 -3.2 hypothetical protein compare
ABZR87_RS06350 -2.4 -4.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS07380 -2.4 -6.2 FAD/FMN-binding oxidoreductase compare
ABZR87_RS17310 -2.4 -4.6 PadR family transcriptional regulator compare
ABZR87_RS07360 -2.4 -5.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09445 -2.3 -5.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS20875 -2.3 -4.2 LysR family transcriptional regulator compare
ABZR87_RS16125 -2.3 -4.4 heme biosynthesis protein HemY compare
ABZR87_RS20880 -2.3 -5.3 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS14380 -2.2 -3.7 glutamate racemase compare
ABZR87_RS10170 -2.2 -3.0 RseA family anti-sigma factor compare
ABZR87_RS19975 -2.2 -2.5 thymidine phosphorylase family protein compare
ABZR87_RS08970 -2.1 -2.1 protein TolQ compare
ABZR87_RS15605 -2.1 -2.0 hypothetical protein compare
ABZR87_RS14505 -2.1 -2.8 phosphoribosylanthranilate isomerase compare
ABZR87_RS03425 -2.1 -5.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS01225 -2.1 -2.0 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS04270 -2.1 -2.9 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS02445 -2.1 -1.4 Sec-independent protein translocase protein TatB compare
ABZR87_RS10070 -2.1 -1.6 gephyrin-like molybdotransferase Glp compare
ABZR87_RS01110 -2.1 -5.6 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS03930 -2.1 -1.7 glycine cleavage system protein GcvH compare
ABZR87_RS18695 -2.1 -5.9 sugar-binding transcriptional regulator compare
ABZR87_RS23035 -2.1 -1.7 PIG-L family deacetylase compare
ABZR87_RS08640 -2.1 -3.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS03625 -2.1 -1.4 hypothetical protein compare
ABZR87_RS16735 -2.0 -9.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS03460 -2.0 -6.2 type II secretion system inner membrane protein GspF compare
ABZR87_RS19590 -2.0 -2.7 hypothetical protein compare
ABZR87_RS02570 -2.0 -11.5 glutamate synthase-related protein compare
ABZR87_RS12960 -2.0 -0.9 head completion/stabilization protein compare
ABZR87_RS12145 -1.9 -3.5 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS14535 -1.9 -2.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS09175 -1.9 -1.6 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
ABZR87_RS00185 -1.9 -2.3 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS14965 -1.9 -1.3 DUF3619 family protein compare
ABZR87_RS15485 -1.9 -3.2 glycosyltransferase family 2 protein compare
ABZR87_RS05305 -1.9 -6.2 TetR family transcriptional regulator compare
ABZR87_RS17980 -1.9 -4.6 CheR family methyltransferase compare
ABZR87_RS02565 -1.9 -3.4 glutamate synthase subunit beta compare
ABZR87_RS01035 -1.8 -3.1 histidine utilization repressor compare
ABZR87_RS16055 -1.8 -3.7 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS22690 -1.8 -2.2 XRE family transcriptional regulator compare
ABZR87_RS08610 -1.8 -3.8 YqgE/AlgH family protein compare
ABZR87_RS05695 -1.8 -3.0 2-dehydropantoate 2-reductase compare
ABZR87_RS22830 -1.8 -1.1 Crp/Fnr family transcriptional regulator compare
ABZR87_RS15535 -1.8 -3.7 tRNA glutamyl-Q(34) synthetase GluQRS compare
ABZR87_RS19095 -1.8 -5.4 gluconate:H+ symporter compare
ABZR87_RS00910 -1.8 -2.4 hypothetical protein compare
ABZR87_RS06710 -1.8 -8.9 glutathione synthase compare
ABZR87_RS13540 -1.8 -1.2 DUF1488 family protein compare
ABZR87_RS14530 -1.8 -2.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS03415 -1.8 -5.6 GspH/FimT family pseudopilin compare
ABZR87_RS00210 -1.8 -4.7 nitrite/sulfite reductase compare
ABZR87_RS00820 -1.8 -1.5 YajQ family cyclic di-GMP-binding protein compare
ABZR87_RS13495 -1.8 -2.9 exodeoxyribonuclease III compare
ABZR87_RS08950 -1.8 -2.3 transcriptional regulator NrdR compare
ABZR87_RS05645 -1.7 -1.7 SDR family oxidoreductase compare
ABZR87_RS06845 -1.7 -5.4 heme o synthase compare
ABZR87_RS13285 -1.7 -7.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS23415 -1.7 -1.7 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS11245 -1.7 -2.0 translational GTPase TypA compare
ABZR87_RS08795 -1.7 -1.2 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS13475 -1.7 -2.6 PAS domain S-box protein compare
ABZR87_RS23220 -1.7 -5.1 xylose ABC transporter ATP-binding protein compare
ABZR87_RS05060 -1.7 -2.0 DUF484 family protein compare
ABZR87_RS04975 -1.6 -1.1 peptide deformylase compare
ABZR87_RS01085 -1.6 -3.3 rhombosortase compare
ABZR87_RS01605 -1.6 -5.2 shikimate dehydrogenase compare
ABZR87_RS03850 -1.6 -2.0 ureidoglycolate lyase compare
ABZR87_RS03445 -1.6 -4.3 type II secretion system protein N compare
ABZR87_RS06705 -1.6 -6.6 glutamate--cysteine ligase compare
ABZR87_RS08715 -1.6 -9.6 ATP-grasp domain-containing protein compare
ABZR87_RS08235 -1.6 -0.8 hypothetical protein compare
ABZR87_RS21555 -1.6 -3.5 aspartate aminotransferase family protein compare
ABZR87_RS08985 -1.6 -4.5 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS22035 -1.6 -1.9 hypothetical protein compare
ABZR87_RS07055 -1.6 -5.3 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS03450 -1.6 -7.8 type II secretion system secretin GspD compare
ABZR87_RS03455 -1.6 -4.9 type II secretion system ATPase GspE compare
ABZR87_RS06810 -1.6 -4.6 cytochrome c oxidase assembly protein compare
ABZR87_RS20500 -1.6 -0.8 hypothetical protein compare
ABZR87_RS08710 -1.6 -8.3 sugar transferase compare
ABZR87_RS17565 -1.6 -2.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS10980 -1.6 -0.7 tRNA-Leu compare
ABZR87_RS02380 -1.6 -5.1 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS03705 -1.6 -0.7 DUF2892 domain-containing protein compare
ABZR87_RS14595 -1.6 -3.2 hypothetical protein compare
ABZR87_RS13770 -1.6 -4.7 CoA transferase subunit A compare
ABZR87_RS23265 -1.6 -1.8 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS20495 -1.5 -0.9 hypothetical protein compare
ABZR87_RS23095 -1.5 -0.7 MarR family transcriptional regulator compare
ABZR87_RS17525 -1.5 -6.6 helix-turn-helix domain-containing protein compare
ABZR87_RS10910 -1.5 -1.2 RodZ family helix-turn-helix domain-containing protein compare
ABZR87_RS16795 -1.5 -1.6 VOC family protein compare
ABZR87_RS05570 -1.5 -2.9 lysophospholipid acyltransferase family protein compare
ABZR87_RS04880 -1.5 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS13705 -1.5 -0.9 integration host factor subunit alpha compare
ABZR87_RS06715 -1.5 -2.4 PTS sugar transporter subunit IIA compare
ABZR87_RS20155 -1.5 -2.7 type VI secretion system-associated protein TagF compare
ABZR87_RS12665 -1.5 -1.0 ABC transporter ATP-binding protein compare
ABZR87_RS06825 -1.5 -1.0 twin transmembrane helix small protein compare
ABZR87_RS16860 -1.5 -1.5 response regulator compare
ABZR87_RS17730 -1.5 -3.3 GntR family transcriptional regulator compare
ABZR87_RS10700 -1.5 -4.1 C40 family peptidase compare
ABZR87_RS14970 -1.5 -2.6 DUF3106 domain-containing protein compare
ABZR87_RS03440 -1.5 -3.7 type II secretion system protein GspM compare
ABZR87_RS19035 -1.5 -2.5 response regulator compare
ABZR87_RS17505 -1.4 -2.6 (2Fe-2S)-binding protein compare
ABZR87_RS01610 -1.4 -5.8 energy transducer TonB compare
ABZR87_RS06910 -1.4 -2.6 ANTAR domain-containing protein compare
ABZR87_RS15505 -1.4 -0.7 DNA polymerase III subunit alpha compare
ABZR87_RS07510 -1.4 -1.7 LysR family transcriptional regulator compare
ABZR87_RS01855 -1.4 -5.4 A24 family peptidase compare
ABZR87_RS10925 -1.4 -3.0 tetratricopeptide repeat protein compare
ABZR87_RS02550 -1.4 -1.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS15320 -1.4 -1.1 DUF969 domain-containing protein compare
ABZR87_RS11730 -1.4 -1.5 M55 family metallopeptidase compare
ABZR87_RS10395 -1.4 -3.8 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS11125 -1.4 -2.9 cell division protein ZapE compare
ABZR87_RS00200 -1.4 -2.8 phosphoadenylyl-sulfate reductase compare
ABZR87_RS08665 -1.4 -4.2 GNAT family N-acetyltransferase compare
ABZR87_RS06060 -1.4 -2.9 ABC transporter permease compare
ABZR87_RS10950 -1.4 -6.1 FtsH protease activity modulator HflK compare
ABZR87_RS05495 -1.4 -0.8 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS23225 -1.4 -2.7 sugar ABC transporter permease compare
ABZR87_RS21300 -1.4 -2.3 hypothetical protein compare
ABZR87_RS12345 -1.4 -0.7 dethiobiotin synthase compare
ABZR87_RS06270 -1.4 -3.3 enoyl-CoA hydratase/isomerase family protein compare
ABZR87_RS17085 -1.4 -1.6 hypothetical protein compare
ABZR87_RS10195 -1.4 -1.3 signal peptidase I compare
ABZR87_RS06030 -1.4 -0.7 AraC family transcriptional regulator compare
ABZR87_RS00220 -1.4 -5.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS22915 -1.4 -5.5 glucose-6-phosphate dehydrogenase compare
ABZR87_RS13250 -1.4 -1.4 phosphoserine phosphatase SerB compare
ABZR87_RS07215 -1.4 -0.8 hotdog family protein compare
ABZR87_RS02575 -1.4 -6.0 transposase compare
ABZR87_RS15680 -1.4 -4.2 DNA polymerase I compare
ABZR87_RS07675 -1.3 -4.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS16140 -1.3 -6.5 phosphoenolpyruvate carboxylase compare
ABZR87_RS07320 -1.3 -4.0 gluconokinase compare


Specific Phenotypes

For 1 genes in this experiment