Experiment set3IT005 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with benzoic acid 0.58 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1462 -2.6 -13.6 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_5224 -2.4 -4.1 tRNA-Arg-CCT compare
Pf1N1B4_2005 -2.4 -2.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1180 -2.3 -2.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_5991 -2.3 -2.6 Transcriptional regulator, AraC family compare
Pf1N1B4_769 -2.2 -6.8 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1105 -2.0 -2.9 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_275 -2.0 -2.9 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_644 -2.0 -2.3 Cold shock protein CspC compare
Pf1N1B4_3833 -2.0 -9.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_932 -1.9 -2.2 FIG00963370: hypothetical protein compare
Pf1N1B4_2047 -1.9 -4.7 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_1614 -1.9 -3.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_683 -1.8 -3.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_3111 -1.8 -2.3 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_5720 -1.7 -3.1 hypothetical protein compare
Pf1N1B4_3093 -1.7 -2.4 Outer membrane protein H precursor compare
Pf1N1B4_2885 -1.7 -6.3 Paraquat-inducible protein A compare
Pf1N1B4_710 -1.6 -3.6 Transporter, LysE family compare
Pf1N1B4_3168 -1.6 -3.4 AmpG permease compare
Pf1N1B4_1568 -1.6 -3.9 Twin-arginine translocation protein TatB compare
Pf1N1B4_5383 -1.6 -7.7 hypothetical protein compare
Pf1N1B4_1906 -1.5 -3.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2485 -1.4 -2.1 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_2874 -1.4 -1.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_4030 -1.4 -2.4 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_128 -1.4 -3.3 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_350 -1.4 -5.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_483 -1.4 -2.9 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_4612 -1.4 -2.4 FIG00954117: hypothetical protein compare
Pf1N1B4_1052 -1.4 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_1403 -1.4 -6.2 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_115 -1.4 -2.2 Membrane protein mosC compare
Pf1N1B4_4669 -1.4 -2.1 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_501 -1.3 -2.2 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_1469 -1.3 -10.3 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_1975 -1.3 -2.2 Transcriptional regulator, AsnC family compare
Pf1N1B4_3143 -1.3 -2.4 RecA protein compare
Pf1N1B4_1619 -1.3 -7.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_890 -1.3 -2.7 DNA recombination and repair protein RecO compare
Pf1N1B4_4029 -1.3 -2.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_5311 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_2695 -1.2 -2.1 Rare lipoprotein A precursor compare
Pf1N1B4_2004 -1.2 -2.1 putative membrane protein compare
Pf1N1B4_2106 -1.2 -2.5 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_4039 -1.2 -4.7 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1504 -1.2 -2.0 Acyl carrier protein compare
Pf1N1B4_4035 -1.2 -2.0 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_561 -1.2 -2.8 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_2853 -1.2 -1.9 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_612 -1.2 -2.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_2886 -1.2 -7.8 Paraquat-inducible protein B compare
Pf1N1B4_3685 -1.1 -3.4 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_337 -1.1 -3.8 O-antigen export system permease protein RfbD compare
Pf1N1B4_1472 -1.1 -1.5 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_5552 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_2917 -1.1 -6.1 FIG140336: TPR domain protein compare
Pf1N1B4_324 -1.1 -1.3 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_5791 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_525 -1.1 -2.6 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_5725 -1.1 -1.8 High-affinity iron permease compare
Pf1N1B4_2486 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_34 -1.1 -1.6 Xanthine permease compare
Pf1N1B4_3779 -1.1 -2.0 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_2609 -1.1 -7.6 Catalase (EC 1.11.1.6) compare
Pf1N1B4_3751 -1.1 -1.3 FIG00953060: hypothetical protein compare
Pf1N1B4_327 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_4028 -1.0 -2.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4253 -1.0 -1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_974 -1.0 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4587 -1.0 -1.8 probable dioxygenase compare
Pf1N1B4_2939 -1.0 -3.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2856 -1.0 -3.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_980 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_5779 -1.0 -1.4 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_1511 -1.0 -2.0 FIG027190: Putative transmembrane protein compare
Pf1N1B4_5663 -1.0 -2.0 Periplasmic sugar-binding domain protein compare
Pf1N1B4_2224 -1.0 -1.9 FIG00953390: hypothetical protein compare
Pf1N1B4_5659 -1.0 -6.5 NfuA Fe-S protein maturation compare
Pf1N1B4_5342 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_2959 -1.0 -3.3 FIG067310: hypothetical protein compare
Pf1N1B4_5682 -1.0 -1.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_4331 -1.0 -2.0 Transporter, LysE family compare
Pf1N1B4_182 -1.0 -2.2 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Pf1N1B4_448 -0.9 -1.0 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_2713 -0.9 -1.9 FIG00955339: hypothetical protein compare
Pf1N1B4_2884 -0.9 -3.6 Paraquat-inducible protein A compare
Pf1N1B4_3242 -0.9 -2.7 GCN5-related N-acetyltransferase compare
Pf1N1B4_2401 -0.9 -1.6 Lipoprotein, putative compare
Pf1N1B4_4462 -0.9 -1.7 LysR family transcriptional regulator YbhD compare
Pf1N1B4_4931 -0.9 -1.1 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_5385 -0.9 -2.8 hypothetical protein compare
Pf1N1B4_2247 -0.9 -2.0 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_4243 -0.9 -3.1 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_4533 -0.9 -1.9 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_544 -0.9 -1.9 Small-conductance mechanosensitive channel compare
Pf1N1B4_2114 -0.9 -3.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2209 -0.9 -5.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3356 -0.9 -1.3 Cyclic nucleotide-binding protein compare
Pf1N1B4_4100 -0.9 -2.1 probable transmembrane protein compare
Pf1N1B4_763 -0.9 -2.8 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_4494 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_675 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_348 -0.9 -2.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2339 -0.9 -1.4 COG1872 compare
Pf1N1B4_3454 -0.9 -3.3 Mg/Co/Ni transporter MgtE / CBS domain compare
Pf1N1B4_1667 -0.8 -2.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_4799 -0.8 -1.9 Multidrug resistance protein B compare
Pf1N1B4_1468 -0.8 -6.4 InaA protein compare
Pf1N1B4_3864 -0.8 -2.6 Recombination protein RecR compare
Pf1N1B4_4839 -0.8 -1.4 lipoprotein compare
Pf1N1B4_1234 -0.8 -2.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2867 -0.8 -2.8 Hemin ABC transporter, permease protein compare
Pf1N1B4_1486 -0.8 -2.1 VgrG protein compare
Pf1N1B4_3188 -0.8 -3.3 FIG00953202: hypothetical protein compare
Pf1N1B4_1675 -0.8 -1.7 Transcriptional regulator compare
Pf1N1B4_912 -0.8 -2.9 Toxin mRNA interferase YgiU compare
Pf1N1B4_602 -0.8 -2.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_5690 -0.8 -2.5 Putative TEGT family carrier/transport protein compare
Pf1N1B4_4051 -0.8 -2.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_3939 -0.8 -1.5 FIG00953489: hypothetical protein compare
Pf1N1B4_1626 -0.8 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5249 -0.8 -2.1 Outer membrane protein A precursor compare
Pf1N1B4_2036 -0.8 -2.5 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_4317 -0.8 -1.0 DNA/RNA non-specific endonuclease compare
Pf1N1B4_4833 -0.8 -1.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_197 -0.8 -1.6 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_3069 -0.8 -1.7 FIG00954614: hypothetical protein compare
Pf1N1B4_1936 -0.8 -3.4 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_5769 -0.8 -1.4 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_4089 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_3273 -0.8 -1.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_4516 -0.8 -1.8 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_3508 -0.8 -2.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_627 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_2847 -0.8 -3.1 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_3981 -0.8 -1.0 Predicted carboxypeptidase compare
Pf1N1B4_901 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_2392 -0.8 -2.4 Cytochrome c556 compare
Pf1N1B4_2352 -0.7 -3.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_4695 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_4957 -0.7 -1.5 Transcriptional regulator, TetR family compare
Pf1N1B4_2949 -0.7 -1.3 FIG00956396: hypothetical protein compare
Pf1N1B4_2489 -0.7 -2.3 Biotin synthesis protein BioH compare
Pf1N1B4_3627 -0.7 -1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_289 -0.7 -6.0 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_3468 -0.7 -1.4 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_3448 -0.7 -1.9 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf1N1B4_1307 -0.7 -1.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5112 -0.7 -1.9 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_5361 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_1475 -0.7 -3.1 FIG00962376: hypothetical protein compare
Pf1N1B4_3684 -0.7 -2.6 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_1300 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_419 -0.7 -1.5 Transcriptional regulator, TetR family compare
Pf1N1B4_5492 -0.7 -2.5 hypothetical protein compare
Pf1N1B4_5628 -0.7 -2.1 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_3446 -0.7 -1.3 Putative GTPases (G3E family) compare
Pf1N1B4_1683 -0.7 -1.1 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_3582 -0.7 -0.9 C-methyltransferase compare
Pf1N1B4_5334 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_876 -0.7 -1.9 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_1315 -0.7 -3.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_5370 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_5568 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_1048 -0.7 -2.7 Sulfate transporter, CysZ-type compare
Pf1N1B4_4570 -0.7 -1.8 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_2646 -0.7 -2.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1705 -0.7 -1.9 SAM-dependent methyltransferases compare
Pf1N1B4_5013 -0.7 -1.4 Cointegrate resolution protein T compare
Pf1N1B4_1724 -0.7 -2.0 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_2194 -0.7 -2.8 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf1N1B4_596 -0.7 -2.3 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_1679 -0.7 -1.1 Membrane-fusion protein compare
Pf1N1B4_1617 -0.7 -3.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_35 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_1756 -0.7 -1.8 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_4555 -0.7 -1.9 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_1142 -0.7 -3.8 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB compare
Pf1N1B4_1334 -0.7 -1.1 FIG00955840: hypothetical protein compare
Pf1N1B4_2612 -0.7 -2.0 Putative transport protein compare
Pf1N1B4_3634 -0.7 -2.1 CheW domain protein compare
Pf1N1B4_1540 -0.7 -1.6 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_4745 -0.7 -1.1 Transcriptional regulator, LysR family compare
Pf1N1B4_5881 -0.7 -2.0 AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system compare
Pf1N1B4_1570 -0.7 -1.9 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_198 -0.7 -1.4 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_2891 -0.7 -2.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_2269 -0.7 -1.1 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_2937 -0.7 -1.9 FIG00953775: hypothetical protein compare
Pf1N1B4_1707 -0.7 -1.8 Efflux membrane fusion protein, RND family compare
Pf1N1B4_4705 -0.7 -2.3 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf1N1B4_4964 -0.6 -1.7 Tricarboxylate transport protein TctB compare
Pf1N1B4_5746 -0.6 -1.9 FIG139552: Putative protease compare
Pf1N1B4_2416 -0.6 -3.3 Choline dehydrogenase (EC 1.1.99.1) compare
Pf1N1B4_1827 -0.6 -2.2 FIG00953482: hypothetical protein compare
Pf1N1B4_4929 -0.6 -1.6 Opine oxidase subunit B compare
Pf1N1B4_2172 -0.6 -2.0 Protein of unknown function DUF484 compare
Pf1N1B4_3744 -0.6 -2.2 ABC transporter, ATP-binding protein compare
Pf1N1B4_5556 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in stress experiments

For stress benzoic acid across organisms