Experiment set3IT005 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium Chloride stress

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS19265 +1.4 2.2 LysR family transcriptional regulator compare
HSERO_RS08530 +1.4 5.0 glycine/betaine ABC transporter permease compare
HSERO_RS07470 +1.3 1.8 ketosteroid isomerase compare
HSERO_RS04845 +1.2 4.0 ABC transporter compare
HSERO_RS08535 +1.2 3.1 glycine/betaine ABC transporter substrate-binding protein compare
HSERO_RS12690 +1.2 4.1 transcriptional regulator compare
HSERO_RS10765 +1.2 4.2 hypothetical protein compare
HSERO_RS22205 +1.1 3.2 L-rhamnose mutarotase compare
HSERO_RS18630 +1.1 1.5 hemerythrin compare
HSERO_RS04860 +1.1 1.7 sugar ABC transporter permease compare
HSERO_RS08105 +1.1 4.7 sodium:proton antiporter compare
HSERO_RS13885 +1.1 5.8 histidine kinase compare
HSERO_RS15055 +1.0 2.1 membrane protein compare
HSERO_RS11460 +1.0 2.0 universal stress protein compare
HSERO_RS06935 +1.0 2.1 RNA-binding protein compare
HSERO_RS14975 +1.0 4.2 flagellar motor protein MotA compare
HSERO_RS13890 +1.0 5.6 LuxR family transcriptional regulator compare
HSERO_RS10285 +1.0 4.1 flagellar hook-length control protein compare
HSERO_RS11855 +1.0 1.7 hypothetical protein compare
HSERO_RS21095 +1.0 5.2 UDP-glucose 4-epimerase compare
HSERO_RS14985 +1.0 7.2 transcriptional regulator compare
HSERO_RS19090 +1.0 2.5 C4-dicarboxylate ABC transporter compare
HSERO_RS10190 +1.0 4.9 flagellar basal body rod modification protein FlgD compare
HSERO_RS04875 +1.0 5.2 glycerol kinase compare
HSERO_RS14970 +1.0 3.4 flagellar motor protein MotB compare
HSERO_RS10200 +1.0 5.1 flagellar basal body rod protein FlgF compare
HSERO_RS17095 +0.9 1.6 antitoxin compare
HSERO_RS16825 +0.9 2.2 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS10205 +0.9 3.5 flagellar basal body rod protein FlgG compare
HSERO_RS17340 +0.9 5.8 potassium transporter compare
HSERO_RS10210 +0.9 2.6 flagellar L-ring protein FlgH compare
HSERO_RS10265 +0.9 2.1 flagellar biosynthesis protein FliO compare
HSERO_RS10160 +0.9 6.3 flagellar biosynthesis sigma factor compare
HSERO_RS21090 +0.9 4.4 dTDP-4-dehydrorhamnose reductase compare
HSERO_RS10175 +0.9 4.2 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10145 +0.9 6.4 flagellar biosynthesis protein FlhA compare
HSERO_RS10315 +0.9 2.7 flagellar hook-basal body protein FliE compare
HSERO_RS04850 +0.8 5.2 ABC transporter ATP-binding protein compare
HSERO_RS21735 +0.8 2.5 hypothetical protein compare
HSERO_RS10180 +0.8 1.7 flagellar biosynthesis protein FlgB compare
HSERO_RS15050 +0.8 2.2 hypothetical protein compare
HSERO_RS11665 +0.8 2.3 nitrate ABC transporter ATP-binding protein compare
HSERO_RS21615 +0.8 1.8 ABC transporter substrate-binding protein compare
HSERO_RS10140 +0.8 5.7 flagellar biosynthesis protein FlhB compare
HSERO_RS08045 +0.8 4.2 preprotein translocase subunit TatB compare
HSERO_RS10350 +0.8 1.8 flagellin compare
HSERO_RS02815 +0.8 2.6 HxlR family transcriptional regulator compare
HSERO_RS10150 +0.8 5.9 flagellar biosynthesis regulator FlhF compare
HSERO_RS03190 +0.8 1.9 glutathione S-transferase compare
HSERO_RS10195 +0.8 3.3 flagellar hook protein FlgE compare
HSERO_RS06070 +0.8 3.4 methyl-accepting chemotaxis protein compare
HSERO_RS07255 +0.8 1.7 glutaminase compare
HSERO_RS14260 +0.8 1.0 ferredoxin compare
HSERO_RS21590 +0.8 4.8 ATP-dependent DNA helicase Rep compare
HSERO_RS00450 +0.8 3.2 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS10230 +0.8 4.5 flagellar hook-filament junction protein compare
HSERO_RS17820 +0.8 4.8 Lipid A core--O-antigen ligase compare
HSERO_RS05505 +0.8 2.0 transcriptional regulator compare
HSERO_RS10250 +0.7 4.8 flagellar biosynthesis protein FliR compare
HSERO_RS14395 +0.7 1.8 oxygen-binding protein compare
HSERO_RS13340 +0.7 1.3 hypothetical protein compare
HSERO_RS10310 +0.7 5.1 flagellar M-ring protein FliF compare
HSERO_RS10275 +0.7 5.3 flagellar motor switch protein FliM compare
HSERO_RS10340 +0.7 2.1 flagellar biosynthesis protein FliS compare
HSERO_RS04855 +0.7 3.2 ABC transporter permease compare
HSERO_RS01170 +0.7 4.1 metal-dependent hydrolase compare
HSERO_RS10295 +0.7 5.0 ATP synthase compare
HSERO_RS03925 +0.7 1.5 hypothetical protein compare
HSERO_RS21110 +0.7 4.6 dTDP-glucose 4,6-dehydratase compare
HSERO_RS08630 +0.7 2.2 membrane protein compare
HSERO_RS02575 +0.7 2.0 diguanylate cyclase compare
HSERO_RS13150 +0.7 2.6 hypothetical protein compare
HSERO_RS04870 +0.7 5.0 glycerol ABC transporter, substrate-binding component (from data) compare
HSERO_RS08565 +0.7 5.3 RNA helicase compare
HSERO_RS17105 +0.7 1.7 DNA polymerase III subunit epsilon compare
HSERO_RS21100 +0.7 5.5 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS12820 +0.7 1.8 ABC transporter permease compare
HSERO_RS01160 +0.7 2.3 LysR family transcriptional regulator compare
HSERO_RS10290 +0.7 3.5 flagellar biosynthesis protein FliJ compare
HSERO_RS15625 +0.7 1.9 glycosyltransferase family 1 compare
HSERO_RS10185 +0.7 4.0 flagellar basal body rod protein FlgC compare
HSERO_RS02780 +0.7 1.1 hypothetical protein compare
HSERO_RS06045 +0.6 2.7 hypothetical protein compare
HSERO_RS19535 +0.6 0.7 nucleotide-binding protein compare
HSERO_RS10260 +0.6 3.7 flagellar biosynthesis protein FliP compare
HSERO_RS02535 +0.6 3.0 short-chain dehydrogenase compare
HSERO_RS09910 +0.6 1.2 integration host factor subunit alpha compare
HSERO_RS20490 +0.6 1.6 XRE family transcriptional regulator compare
HSERO_RS12925 +0.6 1.6 catabolite repression CreA protein compare
HSERO_RS01000 +0.6 1.7 hypothetical protein compare
HSERO_RS09335 +0.6 1.4 DNA-3-methyladenine glycosylase compare
HSERO_RS12475 +0.6 1.5 histidine kinase compare
HSERO_RS05990 +0.6 1.4 hypothetical protein compare
HSERO_RS16680 +0.6 1.3 GntR family transcriptional regulator compare
HSERO_RS10305 +0.6 4.7 flagellar motor switch protein FliG compare
HSERO_RS11160 +0.6 1.3 glutamine amidotransferase compare
HSERO_RS21875 +0.6 1.3 endoribonuclease L-PSP compare
HSERO_RS09420 +0.6 2.8 HAD family hydrolase compare
HSERO_RS12010 +0.6 2.1 hemerythrin compare
HSERO_RS04525 +0.6 2.3 lysozyme compare
HSERO_RS20795 +0.6 1.4 membrane protein compare
HSERO_RS19750 +0.6 1.5 hypothetical protein compare
HSERO_RS10970 +0.6 1.8 NfeD family protein compare
HSERO_RS06010 +0.6 2.5 transporter compare
HSERO_RS21085 +0.6 4.4 glycosyl transferase family 1 compare
HSERO_RS03120 +0.6 1.3 chemotaxis protein CheW compare
HSERO_RS10225 +0.6 3.8 flagellar hook protein FlgK compare
HSERO_RS15695 +0.6 2.1 sulfurtransferase compare
HSERO_RS18775 +0.6 2.2 phage killer protein compare
HSERO_RS15335 +0.6 1.5 hypothetical protein compare
HSERO_RS03420 +0.6 1.6 cytochrome B561 compare
HSERO_RS24015 +0.6 2.1 (2Fe-2S)-binding protein compare
HSERO_RS11980 +0.6 1.9 hypothetical protein compare
HSERO_RS13475 +0.6 2.1 C4-dicarboxylate ABC transporter compare
HSERO_RS00725 +0.6 2.6 LysR family transcriptional regulator compare
HSERO_RS16490 +0.6 4.2 FimV compare
HSERO_RS10255 +0.6 2.1 flagellar biosynthesis protein FliQ compare
HSERO_RS08285 +0.6 1.9 amino acid ABC transporter ATP-binding protein compare
HSERO_RS18220 +0.6 2.9 pilus assembly protein compare
HSERO_RS08775 +0.6 2.5 membrane protein compare
HSERO_RS13800 +0.6 1.7 glycosyl transferase family 1 compare
HSERO_RS21075 +0.6 3.6 asparagine synthase compare
HSERO_RS23525 +0.6 1.0 hypothetical protein compare
HSERO_RS06570 +0.6 1.4 endoribonuclease L-PSP compare
HSERO_RS05855 +0.6 2.8 flagellar motor protein MotA compare
HSERO_RS03510 +0.6 2.5 proline aminopeptidase P II compare
HSERO_RS11825 +0.6 2.0 hypothetical protein compare
HSERO_RS01915 +0.6 3.9 membrane protein compare
HSERO_RS10215 +0.5 2.5 flagellar P-ring protein FlgI compare
HSERO_RS05035 +0.5 2.7 glyoxalase compare
HSERO_RS19525 +0.5 1.4 PTS sugar transporter subunit IIA compare
HSERO_RS13610 +0.5 1.3 S-formylglutathione hydrolase compare
HSERO_RS11345 +0.5 0.8 hypothetical protein compare
HSERO_RS19610 +0.5 1.5 hypothetical protein compare
HSERO_RS11370 +0.5 1.6 hypothetical protein compare
HSERO_RS22725 +0.5 2.1 transcriptional regulator compare
HSERO_RS17565 +0.5 1.7 glutamate/aspartate ABC transporter permease GltJ compare
HSERO_RS18740 +0.5 0.9 hypothetical protein compare
HSERO_RS04155 +0.5 1.0 hypothetical protein compare
HSERO_RS19455 +0.5 1.9 3-ketoacyl-ACP reductase compare
HSERO_RS01835 +0.5 1.2 hypothetical protein compare
HSERO_RS06825 +0.5 2.4 transcriptional regulator compare
HSERO_RS12975 +0.5 0.7 phytoene synthase compare
HSERO_RS21135 +0.5 1.5 transcriptional regulator compare
HSERO_RS22395 +0.5 2.0 RNA polymerase sigma factor compare
HSERO_RS06690 +0.5 2.3 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
HSERO_RS16645 +0.5 3.3 ABC transporter permease compare
HSERO_RS18100 +0.5 2.4 hypothetical protein compare
HSERO_RS11880 +0.5 0.6 hypothetical protein compare
HSERO_RS04970 +0.5 1.1 dioxygenase compare
HSERO_RS10730 +0.5 1.8 hypothetical protein compare
HSERO_RS12995 +0.5 1.0 DNAase compare
HSERO_RS15095 +0.5 1.6 AraC family transcriptional regulator compare
HSERO_RS17570 +0.5 1.1 4-carboxymuconolactone decarboxylase compare
HSERO_RS17200 +0.5 2.1 hypothetical protein compare
HSERO_RS16650 +0.5 2.9 ABC transporter substrate-binding protein compare
HSERO_RS11115 +0.5 1.6 citrate transporter compare
HSERO_RS10095 +0.5 1.4 hypothetical protein compare
HSERO_RS01995 +0.5 2.0 peptidoglycan transglycosylase compare
HSERO_RS04005 +0.5 1.7 type III secretion protein compare
HSERO_RS15715 +0.5 2.5 hypothetical protein compare
HSERO_RS14000 +0.5 1.5 hypothetical protein compare
HSERO_RS02775 +0.5 0.9 hypothetical protein compare
HSERO_RS10120 +0.5 1.0 chemotaxis protein CheD compare
HSERO_RS11105 +0.5 0.8 beta-lactamase compare
HSERO_RS14955 +0.5 1.6 chemotaxis protein compare
HSERO_RS10850 +0.5 1.7 ABC transporter compare
HSERO_RS10355 +0.5 2.5 flagellin compare
HSERO_RS09425 +0.5 3.1 Rieske (2Fe-2S) protein compare
HSERO_RS05120 +0.5 2.2 deoxyribose-phosphate aldolase compare
HSERO_RS22965 +0.5 1.3 activator of HSP90 ATPase compare
HSERO_RS22890 +0.5 1.1 hypothetical protein compare
HSERO_RS15105 +0.5 1.8 hypothetical protein compare
HSERO_RS14135 +0.5 2.2 hypothetical protein compare
HSERO_RS04820 +0.5 2.5 C4-dicarboxylate ABC transporter compare
HSERO_RS19310 +0.5 2.1 membrane protein compare
HSERO_RS03805 +0.5 1.5 hypothetical protein compare
HSERO_RS06375 +0.5 2.4 acyl-CoA transferase/carnitine dehydratase compare
HSERO_RS17160 +0.5 1.0 hypothetical protein compare
HSERO_RS20695 +0.5 3.2 methyltransferase compare
HSERO_RS15730 +0.5 2.0 hypothetical protein compare
HSERO_RS20910 +0.5 1.2 hypothetical protein compare
HSERO_RS18295 +0.5 1.9 3'-RNA processing protein compare
HSERO_RS10685 +0.5 1.2 serine endopeptidase compare
HSERO_RS09940 +0.4 1.7 peptidylprolyl isomerase compare
HSERO_RS07490 +0.4 2.2 acyl-CoA dehydrogenase compare
HSERO_RS19910 +0.4 1.0 AraC family transcriptional regulator compare
HSERO_RS07570 +0.4 1.3 membrane protein compare
HSERO_RS06360 +0.4 1.6 transcription regulator protein compare
HSERO_RS06525 +0.4 2.1 3-oxoadipate enol-lactonase compare
HSERO_RS07625 +0.4 1.0 tryptophanyl-tRNA synthetase compare
HSERO_RS06630 +0.4 1.0 alpha/beta hydrolase compare
HSERO_RS18560 +0.4 1.9 hypothetical protein compare
HSERO_RS19140 +0.4 2.2 Rieske (2Fe-2S) protein compare
HSERO_RS22820 +0.4 2.0 ArsR family transcriptional regulator compare
HSERO_RS06735 +0.4 2.0 LysR family transcriptional regulator compare
HSERO_RS10555 +0.4 1.5 ribonuclease compare
HSERO_RS19200 +0.4 2.4 cell shape determination protein CcmA compare
HSERO_RS16800 +0.4 1.4 hypothetical protein compare
HSERO_RS21480 +0.4 1.1 transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium Chloride in Herbaspirillum seropedicae SmR1

For stress Sodium Chloride across organisms