Experiment set3IT005 for Caulobacter crescentus NA1000

Compare to:

PYE with Spectinomycin dihydrochloride pentahydrate 0.025 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02387 +4.0 31.6 glutathione reductase compare
CCNA_02030 +3.4 8.8 hypothetical protein compare
CCNA_03281 +3.3 26.2 AsnC-family transcriptional regulator compare
CCNA_01815 +3.2 22.6 nitrogen assimilation regulatory protein NtrC compare
CCNA_03824 +3.2 22.6 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_00389 +3.1 5.1 aminomethyltransferase family protein compare
CCNA_01059 +3.0 11.9 S-layer protein rsaA compare
CCNA_01964 +3.0 8.9 NADH dehydrogenase compare
CCNA_03858 +2.9 23.5 protein translocase subunit secB compare
CCNA_02448 +2.7 16.1 hypothetical protein compare
CCNA_02026 +2.7 13.2 hypothetical protein compare
CCNA_02037 +2.7 18.5 ATP-dependent endopeptidase Lon compare
CCNA_02028 +2.6 6.0 NTF2 superfamily protein compare
CCNA_00011 +2.6 9.7 chaperone protein DnaJ compare
CCNA_00264 +2.5 15.9 C4-dicarboxylate transport protein compare
CCNA_01242 +2.5 16.5 amino acid permease compare
CCNA_01751 +2.5 13.8 aminodeoxychorismate lyase compare
CCNA_03384 +2.5 7.2 LSU ribosomal protein L31P compare
CCNA_01780 +2.5 18.6 exopolyphosphatase compare
CCNA_02447 +2.4 14.1 PspA/IM30 family regulatory protein compare
CCNA_01453 +2.4 7.8 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_03129 +2.4 16.1 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01814 +2.4 15.6 nitrogen regulation protein ntrB compare
CCNA_02339 +2.3 14.0 methyltransferase compare
CCNA_01433 +2.3 7.5 integration host factor alpha-subunit compare
CCNA_02732 +2.3 5.6 hypothetical protein compare
CCNA_00846 +2.3 19.5 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02066 +2.3 11.2 phytoene/squalene synthase family protein compare
CCNA_01181 +2.3 12.4 hypothetical protein compare
CCNA_01624 +2.3 7.0 orotate phosphoribosyltransferase compare
CCNA_00013 +2.2 19.6 protein-PII uridylyltransferase compare
CCNA_03280 +2.2 18.9 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02127 +2.2 14.2 oxacillin resistance-associated protein fmtC compare
CCNA_02576 +2.1 15.8 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01295 +2.1 12.4 integral membrane protein compare
CCNA_01525 +2.1 11.4 flagellar biosynthesis repressor flbT compare
CCNA_01763 +2.1 13.6 multifunctional aminopeptidase compare
CCNA_02021 +2.1 6.7 hypothetical protein compare
CCNA_02591 +2.1 11.8 glutaredoxin compare
CCNA_02416 +2.1 12.0 DNA-binding protein HU compare
CCNA_01851 +2.0 16.0 quinol cytochrome oxidase polypeptide II compare
CCNA_02980 +2.0 13.9 tryptophan 2,3-dioxygenase compare
CCNA_03961 +2.0 7.7 hypothetical protein compare
CCNA_00505 +2.0 9.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01583 +2.0 3.6 phosphate-binding protein compare
CCNA_02025 +2.0 7.5 hypothetical protein compare
CCNA_01526 +2.0 8.5 flagellar biosynthesis regulatory protein flaF compare
CCNA_00562 +2.0 14.1 dihydroorotate dehydrogenase compare
CCNA_00527 +2.0 11.0 hypothetical protein compare
CCNA_01393 +2.0 13.7 soluble lytic murein transglycosylase compare
CCNA_03612 +2.0 12.1 HTH XRE-family transcriptional regulator compare
CCNA_01979 +1.9 9.5 LexA repressor compare
CCNA_01730 +1.9 11.1 amidophosphoribosyltransferase compare
CCNA_03062 +1.9 11.9 cell wall hydrolase family protein compare
CCNA_02243 +1.9 13.5 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01094 +1.9 4.4 hypothetical protein compare
CCNA_00756 +1.9 4.4 hypothetical protein compare
CCNA_02103 +1.9 11.6 hypothetical protein compare
CCNA_01801 +1.9 11.4 hypothetical protein compare
CCNA_03030 +1.9 11.5 cytochrome c2 compare
CCNA_00684 +1.9 10.5 anti-sigma factor, ChrR-family compare
CCNA_02151 +1.9 6.3 exodeoxyribonuclease VII small subunit compare
CCNA_00939 +1.9 7.8 MarR-family transcriptional regulator compare
CCNA_00104 +1.9 14.0 orotidine 5'-phosphate decarboxylase compare
CCNA_02526 +1.9 13.9 dihydroorotase compare
CCNA_01712 +1.9 15.8 CopY/TcrY family transcriptional repressor compare
CCNA_01593 +1.9 13.0 Xaa-pro aminopeptidase compare
CCNA_03524 +1.8 10.5 di-/tripeptide transporter compare
CCNA_02133 +1.8 7.9 glucokinase compare
CCNA_01931 +1.8 12.0 TetR-family transcriptional regulator compare
CCNA_01058 +1.8 12.1 helix-turn-helix transcriptional regulator compare
CCNA_01573 +1.8 10.2 ArsR-family transcriptional regulator compare
CCNA_01252 +1.8 14.1 soluble lytic murein transglycosylase compare
CCNA_01186 +1.8 7.2 hypothetical protein compare
CCNA_01063 +1.8 9.1 UDP-perosamine 4-acetyl transferase compare
CCNA_02619 +1.8 14.0 stomatin/prohibitin-related protein compare
CCNA_03951 +1.8 8.5 hypothetical protein compare
CCNA_01655 +1.8 10.1 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00769 +1.8 8.6 TetR family transcriptional regulator compare
CCNA_01840 +1.8 13.1 MerR-family transcriptional regulator compare
CCNA_00781 +1.8 13.3 two-component receiver protein CpdR compare
CCNA_02957 +1.8 9.3 ArsR-family transcriptional regulator compare
CCNA_01553 +1.7 8.8 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_00518 +1.7 9.9 LSU ribosomal protein L25P compare
CCNA_02419 +1.7 6.9 TonB1 protein compare
CCNA_03271 +1.7 12.3 methionine gamma-lyase compare
CCNA_02616 +1.7 11.5 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_03012 +1.7 9.0 peroxiredoxin compare
CCNA_02324 +1.7 10.5 heat shock protein 33 hsp33 compare
CCNA_01942 +1.7 9.5 Rrf2 family protein compare
CCNA_02525 +1.7 11.4 aspartate carbamoyltransferase compare
CCNA_01802 +1.7 4.8 hypothetical protein compare
CCNA_02575 +1.7 4.1 hypothetical protein compare
CCNA_R0037 +1.7 3.5 tRNA-Glu compare
CCNA_01848 +1.7 10.8 quinol cytochrome oxidase polypeptide IV compare
CCNA_00699 +1.7 8.6 LSU ribosomal protein L28P compare
CCNA_01521 +1.7 10.3 hypothetical protein compare
CCNA_01684 +1.7 9.4 phenylalanine-4-hydroxylase compare
CCNA_01722 +1.6 4.9 hypothetical protein compare
CCNA_00296 +1.6 8.5 phosphate regulon response regulator PhoB compare
CCNA_01804 +1.6 11.2 glutathione peroxidase compare
CCNA_02467 +1.6 9.2 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_00392 +1.6 11.8 dihydroorotase compare
CCNA_03989 +1.6 12.5 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02617 +1.6 12.3 histidinol-phosphate aminotransferase compare
CCNA_03325 +1.6 7.1 hypothetical protein compare
CCNA_01913 +1.6 9.8 MarR-family transcriptional regulator compare
CCNA_01603 +1.6 8.6 aspartate aminotransferase compare
CCNA_00895 +1.6 11.4 hypothetical protein compare
CCNA_00872 +1.6 6.3 glutaredoxin compare
CCNA_02941 +1.6 4.6 transcription elongation factor greA compare
CCNA_02414 +1.6 7.6 DadA-related amino acid oxidase compare
CCNA_00920 +1.6 5.9 hypothetical protein compare
CCNA_00999 +1.5 6.2 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_01008 +1.5 11.5 urocanate hydratase compare
CCNA_03123 +1.5 10.8 ArsR-family transcriptional regulator compare
CCNA_00447 +1.5 7.9 chemotaxis protein cheD compare
CCNA_02553 +1.5 12.2 ATP-dependent clp protease ATP-binding subunit ClpA compare
CCNA_03936 +1.5 7.3 hypothetical protein compare
CCNA_03214 +1.5 8.8 hypothetical protein compare
CCNA_00073 +1.5 12.7 HemY domain membrane protein compare
CCNA_R0048 +1.5 1.9 tRNA-Leu compare
CCNA_01690 +1.5 5.5 MAPEG family membrane protein compare
CCNA_02546 +1.5 10.6 GGDEF/response regulator protein PleD compare
CCNA_03043 +1.5 7.1 type IV pilin protein pilA compare
CCNA_01678 +1.5 8.6 arginine N-succinyltransferase, beta chain compare
CCNA_03289 +1.5 7.8 HicB-family RNA-binding protein compare
CCNA_00153 +1.5 5.2 adenine nucleotide exchange factor GrpE compare
CCNA_02289 +1.5 9.4 MarR/EmrR family transcriptional regulator compare
CCNA_03808 +1.5 11.0 organic solvent resistance transport system Ttg2C protein compare
CCNA_02004 +1.5 3.4 SOS-induced inhibitor of cell division SidA compare
CCNA_01622 +1.5 4.7 Rsh ppGpp hydrolase-synthetase compare
CCNA_02073 +1.4 5.4 cupin domain transcriptional regulator compare
CCNA_01849 +1.4 8.4 quinol cytochrome oxidase polypeptide III compare
CCNA_01619 +1.4 8.3 NYN domain protein compare
CCNA_01235 +1.4 7.9 AcrR-family transcriptional regulator compare
CCNA_02728 +1.4 8.2 hypothetical protein compare
CCNA_01775 +1.4 5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_01968 +1.4 3.1 pentapeptide repeats containing protein compare
CCNA_02328 +1.4 1.3 cell cycle regulatory protein GcrA compare
CCNA_02081 +1.4 5.1 Sec-independent protein translocase protein tatB compare
CCNA_03072 +1.4 5.6 TetR-family transcriptional regulator compare
CCNA_01742 +1.4 5.8 hypothetical protein compare
CCNA_00072 +1.4 9.9 hypothetical protein compare
CCNA_01728 +1.4 8.0 short chain dehydrogenase compare
CCNA_02910 +1.4 11.7 TonB-dependent receptor compare
CCNA_03479 +1.4 8.5 MarR-family transcriptional regulator compare
CCNA_02000 +1.4 2.9 SSU ribosomal protein S2P compare
CCNA_01528 +1.4 8.6 flagellin fljK compare
CCNA_02225 +1.4 8.9 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_03371 +1.4 6.2 bacterioferritin compare
CCNA_02171 +1.4 10.1 nucleoside permease nupC compare
CCNA_01541 +1.4 9.5 LysR-family transcriptional regulator compare
CCNA_03811 +1.4 9.5 LysR-family transcriptional regulator compare
CCNA_01774 +1.4 2.9 phosphoribosylglycinamide formyltransferase compare
CCNA_02132 +1.4 5.5 LacI-family transcriptional regulator compare
CCNA_00944 +1.4 7.9 flagellar hook length determination protein compare
CCNA_00521 +1.4 2.7 antitoxin protein compare
CCNA_00945 +1.4 9.3 chemotaxis protein MotD compare
CCNA_03689 +1.4 10.2 alanine dehydrogenase compare
CCNA_00998 +1.4 7.1 ROS/MUCR transcriptional regulator compare
CCNA_02552 +1.4 3.9 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_00834 +1.4 6.9 flagellin FljM compare
CCNA_00027 +1.4 2.8 2OG-Fe(II) oxygenase compare
CCNA_00471 +1.4 8.5 GDP-L-fucose synthase compare
CCNA_00947 +1.4 10.8 flagellar hook protein FlgE compare
CCNA_03514 +1.3 8.8 cytochrome c oxidase assembly protein ctaG compare
CCNA_00803 +1.3 6.6 chemotaxis protein cheW compare
CCNA_00682 +1.3 7.3 MarR-family transcriptional regulator compare
CCNA_03089 +1.3 7.6 hypothetical protein compare
CCNA_02805 +1.3 4.9 hypothetical protein compare
CCNA_02379 +1.3 7.4 hypothetical protein compare
CCNA_01679 +1.3 8.1 succinylglutamic semialdehyde dehydrogenase compare
CCNA_02199 +1.3 10.5 methyltransferase compare
CCNA_00459 +1.3 8.6 Na+/H+ antiporter nhaA compare
CCNA_01918 +1.3 7.2 cyclic di-GMP effector protein PopA compare
CCNA_00924 +1.3 6.4 MarR/EmrR family transcriptional regulator compare
CCNA_00930 +1.3 9.6 riboflavin synthase alpha chain compare
CCNA_02729 +1.3 10.5 oligopeptide transporter compare
CCNA_00028 +1.3 5.2 TonB-dependent receptor compare
CCNA_02330 +1.3 6.7 hypothetical protein compare
CCNA_03643 +1.3 1.8 succinate dehydrogenase membrane anchor subunit compare
CCNA_02567 +1.3 8.8 sensory transduction histidine kinase pleC compare
CCNA_03863 +1.3 4.2 hypothetical protein compare
CCNA_01813 +1.3 7.3 tRNA-dihydrouridine synthase compare
CCNA_03893 +1.3 3.5 hypothetical protein compare
CCNA_00726 +1.3 9.8 acyl-CoA dehydrogenase compare
CCNA_02341 +1.3 6.2 small heat shock protein compare
CCNA_02586 +1.3 7.4 phosphoribosylformylglycinamidine synthase II compare
CCNA_01847 +1.3 9.3 cytochrome c oxidase assembly protein Surf1 compare
CCNA_01339 +1.3 5.6 ArsR-family transcriptional regulator compare
CCNA_01065 +1.3 7.9 glycosyltransferase compare
CCNA_01060 +1.3 5.8 type I protein secretion ATP-binding protein RsaD compare
CCNA_03938 +1.3 4.3 hypothetical protein compare
CCNA_01739 +1.3 7.0 LSU ribosomal protein L9P compare
CCNA_01193 +1.3 10.1 amylosucrase compare
CCNA_01505 +1.3 3.8 hypothetical protein compare
CCNA_01731 +1.3 6.6 colicin V production protein CvpA compare
CCNA_00441 +1.3 6.6 chemotaxis receiver domain protein cheYI compare
CCNA_03215 +1.3 8.5 ARO8 family aminotransferase/HTH DNA-binding protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Caulobacter crescentus NA1000

For stress Spectinomycin dihydrochloride pentahydrate across organisms