Experiment set3IT005 for Ralstonia sp. UNC404CL21Col

Compare to:

root sample 5; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS11330 -5.0 -3.1 transcriptional repressor LexA compare
ABZR87_RS21795 -4.8 -3.3 NUDIX domain-containing protein compare
ABZR87_RS21950 -4.4 -5.8 hypothetical protein compare
ABZR87_RS13250 -4.3 -2.6 phosphoserine phosphatase SerB compare
ABZR87_RS08695 -4.2 -10.1 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS12960 -4.0 -1.3 head completion/stabilization protein compare
ABZR87_RS22035 -3.9 -4.1 hypothetical protein compare
ABZR87_RS21375 -3.8 -1.7 DUF6566 family protein compare
ABZR87_RS02155 -3.7 -5.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS06350 -3.6 -8.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS00340 -3.6 -2.2 50S ribosomal protein L33 compare
ABZR87_RS03850 -3.5 -5.5 ureidoglycolate lyase compare
ABZR87_RS08630 -3.5 -4.8 dihydroorotase compare
ABZR87_RS19485 -3.5 -1.5 H-NS histone family protein compare
ABZR87_RS12345 -3.5 -1.1 dethiobiotin synthase compare
ABZR87_RS14500 -3.4 -9.1 tryptophan synthase subunit beta compare
ABZR87_RS13645 -3.4 -1.1 hypothetical protein compare
ABZR87_RS09450 -3.4 -5.7 prephenate dehydratase compare
ABZR87_RS02565 -3.4 -3.3 glutamate synthase subunit beta compare
ABZR87_RS02590 -3.3 -3.9 3-dehydroquinate synthase compare
ABZR87_RS02595 -3.3 -8.2 shikimate kinase compare
ABZR87_RS02655 -3.2 -7.4 anti-sigma factor compare
ABZR87_RS05205 -3.2 -4.3 methionine biosynthesis protein MetW compare
ABZR87_RS03420 -3.2 -1.0 type II secretion system minor pseudopilin GspI compare
ABZR87_RS21940 -3.1 -1.0 hypothetical protein compare
ABZR87_RS02160 -3.1 -3.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS05200 -3.1 -12.1 homoserine O-acetyltransferase compare
ABZR87_RS08990 -3.1 -2.1 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS07290 -3.1 -2.2 DUF6691 family protein compare
ABZR87_RS07360 -3.1 -5.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09465 -3.1 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS05100 -3.1 -2.1 RNA polymerase-binding protein DksA compare
ABZR87_RS02140 -3.1 -11.8 anthranilate synthase component I compare
ABZR87_RS22970 -3.0 -8.5 cystathionine gamma-synthase family protein compare
ABZR87_RS14380 -3.0 -4.6 glutamate racemase compare
ABZR87_RS15715 -2.9 -5.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS14535 -2.9 -2.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS22920 -2.8 -3.4 phosphogluconate dehydratase compare
ABZR87_RS07380 -2.8 -7.0 FAD/FMN-binding oxidoreductase compare
ABZR87_RS17310 -2.8 -5.0 PadR family transcriptional regulator compare
ABZR87_RS02640 -2.8 -9.0 diaminopimelate decarboxylase compare
ABZR87_RS14540 -2.7 -4.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS08645 -2.7 -0.8 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS16125 -2.6 -5.3 heme biosynthesis protein HemY compare
ABZR87_RS01225 -2.6 -2.5 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS01085 -2.6 -3.3 rhombosortase compare
ABZR87_RS00865 -2.6 -1.1 VTT domain-containing protein compare
ABZR87_RS21150 -2.5 -2.7 branched-chain amino acid ABC transporter permease compare
ABZR87_RS17980 -2.5 -6.4 CheR family methyltransferase compare
ABZR87_RS05965 -2.5 -1.4 hemerythrin domain-containing protein compare
ABZR87_RS06710 -2.5 -11.7 glutathione synthase compare
ABZR87_RS01810 -2.5 -2.4 glutamate 5-kinase compare
ABZR87_RS00295 -2.5 -2.6 ABC transporter ATP-binding protein compare
ABZR87_RS18000 -2.5 -2.4 protein phosphatase CheZ compare
ABZR87_RS18695 -2.5 -5.7 sugar-binding transcriptional regulator compare
ABZR87_RS11675 -2.5 -2.7 disulfide bond formation protein B compare
ABZR87_RS10900 -2.5 -4.4 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS14190 -2.4 -9.8 DUF2589 domain-containing protein compare
ABZR87_RS01110 -2.4 -7.1 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS14185 -2.4 -2.3 lysozyme compare
ABZR87_RS14115 -2.4 -1.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS03930 -2.3 -1.8 glycine cleavage system protein GcvH compare
ABZR87_RS06705 -2.3 -7.5 glutamate--cysteine ligase compare
ABZR87_RS13790 -2.3 -5.9 chorismate synthase compare
ABZR87_RS13285 -2.3 -8.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS20875 -2.3 -4.0 LysR family transcriptional regulator compare
ABZR87_RS14490 -2.3 -5.2 tryptophan synthase subunit alpha compare
ABZR87_RS09460 -2.3 -3.8 prephenate dehydrogenase compare
ABZR87_RS10195 -2.3 -1.6 signal peptidase I compare
ABZR87_RS20955 -2.2 -2.1 MarR family transcriptional regulator compare
ABZR87_RS02570 -2.2 -12.9 glutamate synthase-related protein compare
ABZR87_RS14530 -2.2 -3.4 3-isopropylmalate dehydrogenase compare
ABZR87_RS02380 -2.2 -6.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS13475 -2.2 -2.6 PAS domain S-box protein compare
ABZR87_RS09445 -2.2 -6.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02145 -2.2 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS19010 -2.2 -2.1 acyloxyacyl hydrolase compare
ABZR87_RS22520 -2.2 -1.6 ABATE domain-containing protein compare
ABZR87_RS12650 -2.1 -4.8 peptidylprolyl isomerase compare
ABZR87_RS11730 -2.1 -2.0 M55 family metallopeptidase compare
ABZR87_RS05305 -2.1 -6.7 TetR family transcriptional regulator compare
ABZR87_RS01450 -2.1 -2.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS12945 -2.1 -3.7 GPO family capsid scaffolding protein compare
ABZR87_RS02375 -2.0 -4.9 cytochrome c1 compare
ABZR87_RS00435 -2.0 -1.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS04785 -2.0 -6.9 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS23175 -2.0 -2.0 ABC transporter ATP-binding protein compare
ABZR87_RS08985 -2.0 -5.3 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS22690 -2.0 -2.1 XRE family transcriptional regulator compare
ABZR87_RS03410 -2.0 -5.4 type II secretion system major pseudopilin GspG compare
ABZR87_RS10955 -1.9 -5.1 protease modulator HflC compare
ABZR87_RS08970 -1.9 -3.9 protein TolQ compare
ABZR87_RS20250 -1.9 -1.4 type VI secretion system lipoprotein TssJ compare
ABZR87_RS08155 -1.9 -3.0 methyl-accepting chemotaxis protein compare
ABZR87_RS13705 -1.9 -1.0 integration host factor subunit alpha compare
ABZR87_RS12150 -1.9 -1.9 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS00305 -1.9 -9.3 ABC transporter ATP-binding protein compare
ABZR87_RS02440 -1.9 -3.2 twin-arginine translocase subunit TatC compare
ABZR87_RS20785 -1.9 -0.8 DUF2783 domain-containing protein compare
ABZR87_RS11160 -1.9 -3.1 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR87_RS13400 -1.9 -0.8 hypothetical protein compare
ABZR87_RS10980 -1.9 -0.8 tRNA-Leu compare
ABZR87_RS15065 -1.9 -2.6 TMEM165/GDT1 family protein compare
ABZR87_RS02550 -1.9 -2.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS02385 -1.9 -3.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS03430 -1.8 -7.6 type II secretion system minor pseudopilin GspK compare
ABZR87_RS20880 -1.8 -5.0 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS11440 -1.8 -4.7 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS00205 -1.8 -2.0 DUF934 domain-containing protein compare
ABZR87_RS16270 -1.8 -0.8 cold-shock protein compare
ABZR87_RS10615 -1.8 -2.9 RNA methyltransferase compare
ABZR87_RS19070 -1.8 -2.5 MFS transporter compare
ABZR87_RS19295 -1.8 -2.5 hypothetical protein compare
ABZR87_RS21570 -1.8 -3.2 FAD-binding oxidoreductase compare
ABZR87_RS04565 -1.8 -1.4 PaaI family thioesterase compare
ABZR87_RS03425 -1.7 -4.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS22915 -1.7 -7.0 glucose-6-phosphate dehydrogenase compare
ABZR87_RS20730 -1.7 -0.8 hypothetical protein compare
ABZR87_RS14965 -1.7 -2.1 DUF3619 family protein compare
ABZR87_RS06845 -1.7 -5.6 heme o synthase compare
ABZR87_RS15605 -1.7 -1.7 hypothetical protein compare
ABZR87_RS14970 -1.7 -2.8 DUF3106 domain-containing protein compare
ABZR87_RS14135 -1.7 -2.9 transcription elongation factor GreA compare
ABZR87_RS23095 -1.7 -0.8 MarR family transcriptional regulator compare
ABZR87_RS02445 -1.7 -2.0 Sec-independent protein translocase protein TatB compare
ABZR87_RS07430 -1.7 -0.9 FmdB family zinc ribbon protein compare
ABZR87_RS03865 -1.7 -5.1 GntR family transcriptional regulator compare
ABZR87_RS00300 -1.7 -5.6 ABC transporter ATP-binding protein compare
ABZR87_RS11460 -1.7 -2.8 gephyrin-like molybdotransferase Glp compare
ABZR87_RS12145 -1.7 -3.0 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS10200 -1.7 -3.3 DUF4845 domain-containing protein compare
ABZR87_RS14505 -1.7 -2.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS02220 -1.7 -4.6 redox-regulated ATPase YchF compare
ABZR87_RS16055 -1.6 -4.4 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS12780 -1.6 -0.7 HU family DNA-binding protein compare
ABZR87_RS07005 -1.6 -1.1 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS15145 -1.6 -1.5 hypothetical protein compare
ABZR87_RS08640 -1.6 -2.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS09515 -1.6 -1.1 cysteine synthase CysM compare
ABZR87_RS11245 -1.6 -2.7 translational GTPase TypA compare
ABZR87_RS16730 -1.6 -3.6 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS03415 -1.6 -5.3 GspH/FimT family pseudopilin compare
ABZR87_RS05570 -1.6 -3.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS03440 -1.6 -3.6 type II secretion system protein GspM compare
ABZR87_RS13145 -1.6 -1.7 hypothetical protein compare
ABZR87_RS01610 -1.6 -5.0 energy transducer TonB compare
ABZR87_RS02680 -1.6 -5.1 c-type cytochrome compare
ABZR87_RS14235 -1.6 -4.3 formyltetrahydrofolate deformylase compare
ABZR87_RS15955 -1.6 -1.5 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS14510 -1.6 -1.9 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS07675 -1.6 -5.6 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS20440 -1.6 -0.7 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS00220 -1.6 -5.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS04880 -1.6 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS16170 -1.6 -1.1 argininosuccinate lyase compare
ABZR87_RS11060 -1.6 -3.1 hypothetical protein compare
ABZR87_RS09655 -1.6 -3.9 ribosome biogenesis factor YjgA compare
ABZR87_RS00210 -1.5 -5.1 nitrite/sulfite reductase compare
ABZR87_RS09855 -1.5 -3.7 tetratricopeptide repeat protein compare
ABZR87_RS23360 -1.5 -1.2 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS19590 -1.5 -2.1 hypothetical protein compare
ABZR87_RS23220 -1.5 -4.7 xylose ABC transporter ATP-binding protein compare
ABZR87_RS09895 -1.5 -0.8 DUF1841 family protein compare
ABZR87_RS17985 -1.5 -4.1 chemoreceptor glutamine deamidase CheD compare
ABZR87_RS20300 -1.5 -1.5 hypothetical protein compare
ABZR87_RS17395 -1.5 -1.6 GNAT family protein compare
ABZR87_RS03435 -1.5 -3.6 type II secretion system protein GspL compare
ABZR87_RS03460 -1.5 -5.3 type II secretion system inner membrane protein GspF compare
ABZR87_RS11165 -1.5 -4.9 cytochrome c oxidase accessory protein CcoG compare
ABZR87_RS04595 -1.5 -1.1 hypothetical protein compare
ABZR87_RS10190 -1.4 -2.6 translation elongation factor 4 compare
ABZR87_RS00315 -1.4 -6.2 branched-chain amino acid ABC transporter substrate-binding protein compare
ABZR87_RS07055 -1.4 -4.9 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS02605 -1.4 -4.7 pilus assembly protein PilP compare
ABZR87_RS12785 -1.4 -1.0 endopeptidase La compare
ABZR87_RS13315 -1.4 -4.1 RluA family pseudouridine synthase compare
ABZR87_RS22645 -1.4 -1.2 hypothetical protein compare
ABZR87_RS14360 -1.4 -5.8 acetate--CoA ligase compare
ABZR87_RS01855 -1.4 -6.2 A24 family peptidase compare
ABZR87_RS14005 -1.4 -2.2 MerR family transcriptional regulator compare
ABZR87_RS02555 -1.4 -2.1 ABC transporter ATP-binding protein compare
ABZR87_RS03045 -1.4 -3.2 DUF2160 domain-containing protein compare
ABZR87_RS06770 -1.4 -3.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS20400 -1.4 -3.3 cysteine dioxygenase compare
ABZR87_RS12660 -1.4 -2.0 ABC transporter permease compare
ABZR87_RS07510 -1.4 -2.1 LysR family transcriptional regulator compare
ABZR87_RS23225 -1.4 -3.2 sugar ABC transporter permease compare
ABZR87_RS06270 -1.4 -3.3 enoyl-CoA hydratase/isomerase family protein compare
ABZR87_RS02610 -1.4 -5.8 type 4a pilus biogenesis protein PilO compare
ABZR87_RS21415 -1.4 -2.4 OmpA family protein compare
ABZR87_RS07345 -1.4 -3.1 hypothetical protein compare
ABZR87_RS12165 -1.4 -6.3 ABC-F family ATPase compare
ABZR87_RS03455 -1.4 -4.7 type II secretion system ATPase GspE compare
ABZR87_RS23495 -1.4 -2.0 hypothetical protein compare
ABZR87_RS17315 -1.4 -2.7 MarR family transcriptional regulator compare
ABZR87_RS01275 -1.3 -2.7 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS14595 -1.3 -2.8 hypothetical protein compare
ABZR87_RS09625 -1.3 -3.9 CobD/CbiB family protein compare
ABZR87_RS06715 -1.3 -1.7 PTS sugar transporter subunit IIA compare
ABZR87_RS17990 -1.3 -3.3 chemotaxis response regulator protein-glutamate methylesterase compare


Specific Phenotypes

For 1 genes in this experiment