Experiment set3IT005 for Ralstonia sp. UNC404CL21Col

200 most detrimental genes:

gene	name	fitness	t score	description
ABZR87_RS01375		+10.9	68.3	two-component system hybrid sensor histidine kinase/response regulator PhcR
ABZR87_RS01430		+9.4	47.9	LysR family transcriptional regulator
ABZR87_RS01370		+7.8	18.3	ATP-binding protein
ABZR87_RS01215		+6.2	47.5	PilT/PilU family type 4a pilus ATPase
ABZR87_RS07020		+6.2	38.3	dynamin-like GTPase family protein
ABZR87_RS01365		+5.9	13.5	class I SAM-dependent methyltransferase PhcB
ABZR87_RS18850		+5.5	35.2	PAS domain-containing methyl-accepting chemotaxis protein
ABZR87_RS19495		+5.2	24.8	helix-turn-helix transcriptional regulator
ABZR87_RS09500		+5.0	17.2	D-glycero-beta-D-manno-heptose-7-phosphate kinase
ABZR87_RS03075		+4.9	36.5	AGE family epimerase/isomerase
ABZR87_RS08750		+4.6	20.2	lipopolysaccharide heptosyltransferase I
ABZR87_RS08040		+4.2	22.3	lipopolysaccharide heptosyltransferase II
ABZR87_RS19565		+3.9	9.9	DUF3613 domain-containing protein
ABZR87_RS07735		+3.9	11.7	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
ABZR87_RS01220		+3.7	23.1	type IV pilus twitching motility protein PilT
ABZR87_RS16180		+3.5	2.3	arginine/lysine/ornithine decarboxylase
ABZR87_RS19560		+3.4	17.5	lipoprotein
ABZR87_RS16080		+3.4	2.1	P-II family nitrogen regulator
ABZR87_RS13120		+3.3	7.3	helix-turn-helix transcriptional regulator
ABZR87_RS13130		+3.2	6.5	ogr/Delta-like zinc finger family protein
ABZR87_RS19530		+3.2	11.7	Flp pilus assembly protein CpaB
ABZR87_RS02480		+3.2	2.2	imidazole glycerol phosphate synthase subunit HisH
ABZR87_RS19540		+3.1	6.1	CpaE family protein
ABZR87_RS19555		+3.1	9.0	type II secretion system F family protein
ABZR87_RS05015		+3.1	2.1	penicillin-binding protein 2
ABZR87_RS05010		+3.0	2.1	rod shape-determining protein RodA
ABZR87_RS19100		+3.0	1.4	RidA family protein
ABZR87_RS00385		+3.0	5.4	response regulator transcription factor
ABZR87_RS19535		+2.9	12.2	type II and III secretion system protein family protein
ABZR87_RS05025		+2.8	1.9	rod shape-determining protein MreC
ABZR87_RS22285		+2.8	10.1	flagellar basal body rod protein FlgC
ABZR87_RS23380		+2.8	2.1	chemotaxis protein CheW
ABZR87_RS19550		+2.8	12.4	type II secretion system F family protein
ABZR87_RS17945		+2.7	20.4	flagellar motor stator protein MotA
ABZR87_RS22205		+2.7	10.6	flagellar biosynthetic protein FliO
ABZR87_RS19520		+2.7	15.2	prepilin peptidase
ABZR87_RS06495		+2.7	7.2	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase
ABZR87_RS17950		+2.7	15.3	flagellar motor protein MotB
ABZR87_RS19525		+2.6	9.8	TadE/TadG family type IV pilus assembly protein
ABZR87_RS22290		+2.6	13.6	flagellar basal body rod protein FlgB
ABZR87_RS22275		+2.6	17.3	flagellar hook protein FlgE
ABZR87_RS14955		+2.6	3.0	acetolactate synthase 3 catalytic subunit
ABZR87_RS22260		+2.6	8.4	flagellar basal body L-ring protein FlgH
ABZR87_RS22190		+2.5	7.3	flagellar basal body-associated protein FliL
ABZR87_RS18025		+2.5	20.0	flagellar biosynthesis protein FlhA
ABZR87_RS22265		+2.5	14.5	flagellar basal-body rod protein FlgG
ABZR87_RS22060		+2.5	4.8	flagellar export protein FliJ
ABZR87_RS19545		+2.5	7.9	CpaF family protein
ABZR87_RS22250		+2.5	14.6	flagellar assembly peptidoglycan hydrolase FlgJ
ABZR87_RS22270		+2.5	14.7	flagellar basal-body rod protein FlgF
ABZR87_RS19570		+2.5	15.2	TadG family pilus assembly protein
ABZR87_RS22195		+2.5	18.5	flagellar motor switch protein FliM
ABZR87_RS22080		+2.4	17.6	flagellar basal-body MS-ring/collar protein FliF
ABZR87_RS22210		+2.4	16.3	flagellar type III secretion system pore protein FliP
ABZR87_RS22295		+2.4	19.0	flagellar basal body P-ring formation chaperone FlgA
ABZR87_RS22065		+2.4	13.6	flagellar protein export ATPase FliI
ABZR87_RS22220		+2.4	13.0	flagellar biosynthetic protein FliR
ABZR87_RS18015		+2.3	13.6	flagellar biosynthesis protein FlhB
ABZR87_RS22055		+2.3	8.0	flagellar hook-length control protein FliK
ABZR87_RS22255		+2.3	10.4	flagellar basal body P-ring protein FlgI
ABZR87_RS21045		+2.2	1.8	cyclopropane-fatty-acyl-phospholipid synthase family protein
ABZR87_RS23250		+2.2	2.0	hypothetical protein
ABZR87_RS19005		+2.2	12.7	sensor domain-containing diguanylate cyclase
ABZR87_RS17930		+2.2	9.0	flagellar transcriptional regulator FlhD
ABZR87_RS21735		+2.2	4.2	DUF2917 domain-containing protein
ABZR87_RS22075		+2.2	7.8	flagellar motor switch protein FliG
ABZR87_RS09635		+2.1	1.4	ribosome small subunit-dependent GTPase A
ABZR87_RS14910		+2.1	4.2	polyribonucleotide nucleotidyltransferase
ABZR87_RS22280		+2.1	6.6	flagellar hook assembly protein FlgD
ABZR87_RS15250		+2.1	6.2	PP2C family serine/threonine-protein phosphatase
ABZR87_RS16515		+2.0	2.1	helix-turn-helix domain-containing protein
ABZR87_RS17440		+2.0	2.8	(2Fe-2S)-binding protein
ABZR87_RS13125		+2.0	5.4	hypothetical protein
ABZR87_RS06395		+2.0	8.7	response regulator
ABZR87_RS17935		+2.0	10.5	flagellar transcriptional regulator FlhC
ABZR87_RS19320		+2.0	2.5	hypothetical protein
ABZR87_RS22175		+1.9	11.7	flagellin
ABZR87_RS17755		+1.9	1.5	methionine ABC transporter permease
ABZR87_RS18530		+1.9	1.5	SDR family oxidoreductase
ABZR87_RS08580		+1.8	6.9	response regulator
ABZR87_RS22310		+1.8	8.1	response regulator transcription factor
ABZR87_RS22305		+1.7	5.3	flagella synthesis protein FlgN
ABZR87_RS14340		+1.7	7.6	methyl-accepting chemotaxis protein
ABZR87_RS05275		+1.7	5.7	winged helix-turn-helix domain-containing protein
ABZR87_RS17340		+1.7	1.8	MarR family transcriptional regulator
ABZR87_RS18620		+1.6	1.6	adenosylmethionine decarboxylase
ABZR87_RS15810		+1.6	4.9	hypothetical protein
ABZR87_RS22240		+1.6	8.9	flagellar hook-associated protein FlgL
ABZR87_RS14095		+1.6	2.7	phosphate ABC transporter permease PstC
ABZR87_RS22245		+1.6	11.0	flagellar hook-associated protein FlgK
ABZR87_RS21905		+1.6	3.8	hypothetical protein
ABZR87_RS13355		+1.6	3.7	hypothetical protein
ABZR87_RS00390		+1.6	8.4	hybrid sensor histidine kinase/response regulator
ABZR87_RS23235		+1.6	8.5	LacI family DNA-binding transcriptional regulator
ABZR87_RS07030		+1.5	2.1	LON peptidase substrate-binding domain-containing protein
ABZR87_RS20500		+1.5	1.7	hypothetical protein
ABZR87_RS00285		+1.5	1.0	acetylornithine transaminase
ABZR87_RS22335		+1.5	9.2	GGDEF and EAL domain-containing protein
ABZR87_RS18040		+1.5	8.7	RNA polymerase sigma factor FliA
ABZR87_RS06405		+1.5	1.2	hypothetical protein
ABZR87_RS08655		+1.5	2.3	glucose-1-phosphate thymidylyltransferase RfbA
ABZR87_RS12370		+1.5	1.7	hypothetical protein
ABZR87_RS16860		+1.4	1.6	response regulator
ABZR87_RS09130		+1.4	2.3	flavin reductase family protein
ABZR87_RS10240		+1.4	0.9	elongation factor P maturation arginine rhamnosyltransferase EarP
ABZR87_RS18030		+1.4	5.9	flagellar biosynthesis protein FlhF
ABZR87_RS05170		+1.4	0.9	acetylglutamate kinase
ABZR87_RS21485		+1.4	2.6	TolC family protein
ABZR87_RS16610		+1.4	1.8	hypothetical protein
ABZR87_RS07700		+1.4	0.9	peptidylprolyl isomerase
ABZR87_RS10870		+1.3	5.8	peptidoglycan DD-metalloendopeptidase family protein
ABZR87_RS07645		+1.3	3.2	Fis family transcriptional regulator
ABZR87_RS21710		+1.3	2.1	efflux RND transporter periplasmic adaptor subunit
ABZR87_RS23295		+1.3	1.2	hypothetical protein
ABZR87_RS21175		+1.3	1.6	acyl-CoA dehydrogenase family protein
ABZR87_RS02515		+1.3	2.2	BolA family protein
ABZR87_RS22415		+1.2	1.2	universal stress protein
ABZR87_RS06860		+1.2	9.5	diguanylate cyclase
ABZR87_RS11790		+1.2	1.6	cell division protein ZipA C-terminal FtsZ-binding domain-containing protein
ABZR87_RS12015		+1.2	5.6	zinc-binding alcohol dehydrogenase family protein
ABZR87_RS13030		+1.2	1.1	phage tail assembly chaperone
ABZR87_RS00075		+1.2	1.8	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
ABZR87_RS15440		+1.2	0.8	ribonuclease G
ABZR87_RS16760		+1.2	1.7	GGDEF domain-containing protein
ABZR87_RS14435		+1.2	1.9	hypothetical protein
ABZR87_RS00935		+1.2	5.1	polynucleotide adenylyltransferase PcnB
ABZR87_RS21060		+1.1	1.6	DUF1365 domain-containing protein
ABZR87_RS18560		+1.1	0.7	NmrA family NAD(P)-binding protein
ABZR87_RS18045		+1.1	1.7	MBL fold metallo-hydrolase
ABZR87_RS08800		+1.1	0.8	NADH:flavin oxidoreductase/NADH oxidase
ABZR87_RS07330		+1.1	2.9	hypothetical protein
ABZR87_RS16965		+1.1	1.7	DUF72 domain-containing protein
ABZR87_RS05430		+1.1	2.3	hypothetical protein
ABZR87_RS18145		+1.1	1.3	lytic transglycosylase domain-containing protein
ABZR87_RS14145		+1.1	1.7	leucine efflux protein LeuE
ABZR87_RS13760		+1.1	1.9	3-hydroxybutyrate dehydrogenase
ABZR87_RS02150		+1.1	1.2	lysozyme inhibitor LprI family protein
ABZR87_RS01760		+1.1	1.0	PP0621 family protein
ABZR87_RS09585		+1.1	2.7	hypothetical protein
ABZR87_RS18035		+1.1	2.3	flagellar synthesis regulator FleN
ABZR87_RS12385		+1.1	1.4	AraC family transcriptional regulator
ABZR87_RS11905		+1.1	1.9	M24 family metallopeptidase
ABZR87_RS16570		+1.1	2.5	VOC family protein
ABZR87_RS04040		+1.1	2.5	DUF3562 domain-containing protein
ABZR87_RS00485		+1.1	3.3	DUF192 domain-containing protein
ABZR87_RS12270		+1.0	2.7	CreA family protein
ABZR87_RS08055		+1.0	1.9	AzlD domain-containing protein
ABZR87_RS16985		+1.0	2.0	DJ-1/PfpI family protein
ABZR87_RS12680		+1.0	3.0	response regulator
ABZR87_RS15575		+1.0	1.2	hypothetical protein
ABZR87_RS15000		+1.0	4.7	TetR/AcrR family transcriptional regulator
ABZR87_RS19935		+1.0	2.7	hypothetical protein
ABZR87_RS18210		+1.0	2.2	aldose epimerase family protein
ABZR87_RS20365		+1.0	1.9	cytochrome c
ABZR87_RS21110		+1.0	1.7	GntR family transcriptional regulator
ABZR87_RS07705		+1.0	2.0	4-hydroxythreonine-4-phosphate dehydrogenase PdxA
ABZR87_RS19175		+1.0	1.3	AraC family transcriptional regulator
ABZR87_RS06415		+1.0	3.7	VOC family protein
ABZR87_RS19810		+1.0	2.3	ThiF family adenylyltransferase
ABZR87_RS21125		+1.0	2.0	YciI family protein
ABZR87_RS12315		+1.0	1.7	benzoate 1,2-dioxygenase small subunit
ABZR87_RS22395		+1.0	2.6	citrate:proton symporter
ABZR87_RS13560		+1.0	2.9	hypothetical protein
ABZR87_RS18860		+1.0	1.9	hypothetical protein
ABZR87_RS15480		+1.0	5.4	glycosyltransferase family 25 protein
ABZR87_RS16885		+1.0	1.5	hypothetical protein
ABZR87_RS01560		+1.0	2.0	ribonuclease domain-containing protein
ABZR87_RS02885		+1.0	1.6	class I SAM-dependent methyltransferase
ABZR87_RS06445		+1.0	3.4	IclR family transcriptional regulator
ABZR87_RS01500		+1.0	2.4	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein
ABZR87_RS15430		+1.0	1.9	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
ABZR87_RS20290		+1.0	1.5	DNA translocase FtsK 4TM domain-containing protein
ABZR87_RS20455		+1.0	2.9	TIGR03364 family FAD-dependent oxidoreductase
ABZR87_RS21300		+1.0	1.6	hypothetical protein
ABZR87_RS18555		+1.0	1.9	AraC family transcriptional regulator
ABZR87_RS12010		+1.0	3.1	D-mannonate oxidoreductase
ABZR87_RS10585		+1.0	2.4	LysR family transcriptional regulator
ABZR87_RS01380		+0.9	4.5	response regulator
ABZR87_RS13200		+0.9	1.6	DUF1800 family protein
ABZR87_RS05355		+0.9	2.5	VOC family protein
ABZR87_RS21365		+0.9	0.6	ligase-associated DNA damage response endonuclease PdeM
ABZR87_RS07240		+0.9	1.4	LolA-related protein
ABZR87_RS10120		+0.9	1.0	YceD family protein
ABZR87_RS17665		+0.9	1.3	PAS domain-containing protein
ABZR87_RS16605		+0.9	2.1	PhnD/SsuA/transferrin family substrate-binding protein
ABZR87_RS14335		+0.9	4.2	CocE/NonD family hydrolase
ABZR87_RS08520		+0.9	2.3	Flp pilus assembly protein CpaB
ABZR87_RS12800		+0.9	0.8	trigger factor
ABZR87_RS13335		+0.9	1.5	hypothetical protein
ABZR87_RS21580		+0.9	1.4	HAD-IA family hydrolase
ABZR87_RS19240		+0.9	1.9	molybdate ABC transporter permease subunit
ABZR87_RS12685		+0.9	2.4	sensor histidine kinase
ABZR87_RS12575		+0.9	1.4	acetyl-CoA C-acyltransferase
ABZR87_RS06345		+0.9	1.4	SDR family oxidoreductase
ABZR87_RS04695		+0.9	1.2	hypothetical protein
ABZR87_RS21215		+0.9	1.3	cysteine dioxygenase family protein
ABZR87_RS11320		+0.9	1.4	cupin domain-containing protein
ABZR87_RS23445		+0.9	1.4	malonate decarboxylase subunit delta
ABZR87_RS20055		+0.9	2.0	BON domain-containing protein
ABZR87_RS13050		+0.9	0.7	GpE family phage tail protein

Specific Phenotypes

For 1 genes in this experiment