Experiment set3IT004 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Benzethonium chloride 0.0125 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_3817 -3.6 -4.8 FIG008443: hypothetical protein compare
Pf1N1B4_1441 -3.5 -13.1 Putative esterase, FIGfam005057 compare
Pf1N1B4_2885 -3.4 -6.1 Paraquat-inducible protein A compare
Pf1N1B4_2886 -3.1 -11.6 Paraquat-inducible protein B compare
Pf1N1B4_3833 -3.1 -9.2 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1307 -3.1 -2.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3816 -3.1 -6.1 FIG139976: hypothetical protein compare
Pf1N1B4_1641 -3.1 -11.9 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_974 -3.0 -4.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_289 -3.0 -13.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_2856 -2.9 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3093 -2.8 -2.0 Outer membrane protein H precursor compare
Pf1N1B4_825 -2.8 -3.7 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf1N1B4_4592 -2.8 -3.0 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_3143 -2.8 -4.1 RecA protein compare
Pf1N1B4_1619 -2.7 -9.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_419 -2.7 -2.6 Transcriptional regulator, TetR family compare
Pf1N1B4_1469 -2.7 -15.7 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_2917 -2.6 -9.2 FIG140336: TPR domain protein compare
Pf1N1B4_1617 -2.6 -7.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3362 -2.6 -4.0 Multidrug resistance protein B compare
Pf1N1B4_3667 -2.6 -7.2 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_3668 -2.6 -8.4 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_3246 -2.5 -4.7 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_188 -2.5 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4882 -2.5 -6.2 Transcriptional regulator MexT compare
Pf1N1B4_1544 -2.5 -7.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2609 -2.5 -12.7 Catalase (EC 1.11.1.6) compare
Pf1N1B4_2682 -2.5 -2.3 Antiholin-like protein LrgA compare
Pf1N1B4_1403 -2.4 -7.2 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_3831 -2.4 -7.8 CmpX compare
Pf1N1B4_3446 -2.4 -2.5 Putative GTPases (G3E family) compare
Pf1N1B4_389 -2.3 -6.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5991 -2.3 -3.1 Transcriptional regulator, AraC family compare
Pf1N1B4_291 -2.3 -5.2 Major outer membrane lipoprotein I compare
Pf1N1B4_3166 -2.3 -11.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3815 -2.3 -4.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf1N1B4_1462 -2.3 -11.8 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_2026 -2.3 -3.9 Transcriptional regulator compare
Pf1N1B4_3713 -2.2 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_2106 -2.2 -3.6 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_348 -2.2 -4.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_1614 -2.2 -3.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_5013 -2.2 -2.2 Cointegrate resolution protein T compare
Pf1N1B4_5383 -2.2 -7.2 hypothetical protein compare
Pf1N1B4_1142 -2.1 -8.5 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB compare
Pf1N1B4_1234 -2.1 -4.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_388 -2.1 -5.1 OmpA family protein compare
Pf1N1B4_4962 -2.1 -3.1 C4-dicarboxylate transport protein compare
Pf1N1B4_4587 -2.0 -2.5 probable dioxygenase compare
Pf1N1B4_1468 -2.0 -10.5 InaA protein compare
Pf1N1B4_1294 -2.0 -2.7 VgrG protein compare
Pf1N1B4_4759 -2.0 -1.9 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_327 -2.0 -2.5 hypothetical protein compare
Pf1N1B4_350 -1.9 -6.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3147 -1.9 -7.0 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf1N1B4_240 -1.9 -2.6 Transcriptional regulators compare
Pf1N1B4_3830 -1.9 -2.6 CrfX protein compare
Pf1N1B4_1008 -1.9 -1.8 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_2695 -1.9 -2.5 Rare lipoprotein A precursor compare
Pf1N1B4_1906 -1.8 -4.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3909 -1.8 -1.7 Cell division inhibitor-related protein compare
Pf1N1B4_1105 -1.8 -2.6 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_967 -1.7 -2.1 hypothetical protein compare
Pf1N1B4_58 -1.7 -5.6 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4695 -1.7 -3.7 hypothetical protein compare
Pf1N1B4_3325 -1.7 -1.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_2377 -1.7 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2486 -1.7 -2.2 hypothetical protein compare
Pf1N1B4_3795 -1.7 -2.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_2491 -1.7 -3.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_4176 -1.7 -2.2 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_2791 -1.6 -2.2 Putative inner membrane protein (Fragment) compare
Pf1N1B4_69 -1.6 -2.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4403 -1.6 -2.2 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_2884 -1.6 -3.8 Paraquat-inducible protein A compare
Pf1N1B4_2959 -1.6 -5.0 FIG067310: hypothetical protein compare
Pf1N1B4_1958 -1.6 -1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3112 -1.6 -4.2 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4699 -1.6 -2.1 Multidrug translocase MdfA compare
Pf1N1B4_1667 -1.6 -3.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_4139 -1.6 -1.7 Transcriptional regulator, MerR family compare
Pf1N1B4_2490 -1.6 -5.9 Biotin synthesis protein BioC compare
Pf1N1B4_1827 -1.6 -3.9 FIG00953482: hypothetical protein compare
Pf1N1B4_4419 -1.6 -1.9 Organosulfonate utilization protein SsuF compare
Pf1N1B4_1 -1.6 -1.6 Colicin V production protein compare
Pf1N1B4_5071 -1.5 -1.7 FIG00959535: hypothetical protein compare
Pf1N1B4_3785 -1.5 -1.6 FOG: Ankyrin repeat compare
Pf1N1B4_3917 -1.5 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2488 -1.5 -6.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1870 -1.5 -3.2 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_3466 -1.5 -2.1 FIG00955605: hypothetical protein compare
Pf1N1B4_5386 -1.5 -2.5 hypothetical protein compare
Pf1N1B4_5709 -1.5 -2.5 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_1328 -1.5 -2.3 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2489 -1.5 -3.8 Biotin synthesis protein BioH compare
Pf1N1B4_3129 -1.5 -1.5 Prophage baseplate assembly protein V compare
Pf1N1B4_2739 -1.5 -1.8 acetyltransferase, GNAT family compare
Pf1N1B4_1118 -1.5 -2.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3361 -1.4 -8.2 Outer membrane receptor proteins, likely involved in siderophore uptake @ TonB-dependent siderophore receptor compare
Pf1N1B4_1268 -1.4 -3.5 Transcriptional regulator, AraC family compare
Pf1N1B4_3559 -1.4 -8.9 Aromatic amino acid transport protein AroP compare
Pf1N1B4_5109 -1.4 -1.6 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_1730 -1.4 -2.3 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_710 -1.4 -2.6 Transporter, LysE family compare
Pf1N1B4_5695 -1.4 -2.7 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_717 -1.4 -5.0 Iron-regulated protein A precursor compare
Pf1N1B4_5736 -1.4 -3.2 Nitrate/nitrite transporter compare
Pf1N1B4_2100 -1.4 -4.7 EF hand domain protein compare
Pf1N1B4_2487 -1.4 -6.7 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_88 -1.4 -2.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf1N1B4_2209 -1.4 -5.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_335 -1.4 -7.1 Glycosyltransferase compare
Pf1N1B4_3828 -1.4 -5.8 Ribonuclease E inhibitor RraA compare
Pf1N1B4_5446 -1.4 -1.2 hypothetical protein compare
Pf1N1B4_1334 -1.3 -1.3 FIG00955840: hypothetical protein compare
Pf1N1B4_868 -1.3 -5.0 tRNA:Cm32/Um32 methyltransferase compare
Pf1N1B4_336 -1.3 -8.7 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_324 -1.3 -1.1 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_4108 -1.3 -2.3 Hydrolase, alpha/beta fold family compare
Pf1N1B4_4669 -1.3 -1.7 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_4485 -1.3 -1.9 membrane protein, putative compare
Pf1N1B4_1527 -1.3 -2.9 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_623 -1.3 -1.2 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_996 -1.3 -2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_3729 -1.3 -1.9 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2247 -1.3 -3.0 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_1511 -1.3 -1.0 FIG027190: Putative transmembrane protein compare
Pf1N1B4_6037 -1.3 -2.3 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_4472 -1.3 -2.0 Transcriptional regulator, ArsR family compare
Pf1N1B4_1636 -1.3 -1.3 FIG00954739: hypothetical protein compare
Pf1N1B4_3499 -1.3 -1.5 hypothetical protein compare
Pf1N1B4_4960 -1.3 -1.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_2975 -1.3 -1.8 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_5967 -1.3 -3.3 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Pf1N1B4_6045 -1.3 -1.5 CigR (Putative inner membrane protein) compare
Pf1N1B4_3927 -1.3 -1.1 hypothetical protein compare
Pf1N1B4_3396 -1.3 -1.3 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_4275 -1.3 -3.3 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_5813 -1.3 -1.8 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_1837 -1.3 -1.4 Osmotically inducible protein C compare
Pf1N1B4_1784 -1.3 -3.5 hypothetical protein compare
Pf1N1B4_5629 -1.3 -3.9 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_718 -1.3 -4.5 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_3625 -1.3 -2.7 Flagellar synthesis regulator FleN compare
Pf1N1B4_1916 -1.3 -1.1 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_3445 -1.2 -2.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_372 -1.2 -1.7 UDP-galactose-lipid carrier transferase (EC 2.-.-.-) compare
Pf1N1B4_2734 -1.2 -1.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_1889 -1.2 -8.3 Fused spore maturation proteins A and B compare
Pf1N1B4_1608 -1.2 -1.9 FIG00956533: hypothetical protein compare
Pf1N1B4_2322 -1.2 -1.5 FIG015547: peptidase, M16 family compare
Pf1N1B4_5239 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_1886 -1.2 -3.4 FIG00956005: hypothetical protein compare
Pf1N1B4_4667 -1.2 -2.5 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_1874 -1.2 -2.2 FIG00953549: hypothetical protein compare
Pf1N1B4_3818 -1.2 -1.5 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_5575 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_128 -1.2 -2.6 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_716 -1.2 -2.5 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_1514 -1.2 -2.2 FIG022199: FAD-binding protein compare
Pf1N1B4_769 -1.2 -4.7 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3670 -1.2 -3.2 probable glucosyl transferase compare
Pf1N1B4_1893 -1.2 -3.0 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf1N1B4_1406 -1.2 -4.0 Methyl-accepting chemotaxis protein compare
Pf1N1B4_758 -1.2 -2.6 Bacterioferritin compare
Pf1N1B4_883 -1.2 -1.1 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_1847 -1.2 -2.8 hypothetical protein compare
Pf1N1B4_4418 -1.2 -3.1 hypothetical protein compare
Pf1N1B4_5507 -1.2 -1.3 hypothetical protein compare
Pf1N1B4_3518 -1.2 -2.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3241 -1.2 -1.4 hypothetical protein compare
Pf1N1B4_1888 -1.2 -3.3 Glutamate-aspartate carrier protein compare
Pf1N1B4_1975 -1.2 -1.8 Transcriptional regulator, AsnC family compare
Pf1N1B4_673 -1.2 -2.1 MoxR-like ATPases compare
Pf1N1B4_5505 -1.2 -2.5 hypothetical protein compare
Pf1N1B4_4110 -1.2 -2.3 hypothetical protein compare
Pf1N1B4_4089 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_2925 -1.2 -2.2 hypothetical protein compare
Pf1N1B4_431 -1.2 -3.6 hypothetical protein compare
Pf1N1B4_1887 -1.2 -2.3 probable exported protein YPO0432 compare
Pf1N1B4_5829 -1.2 -1.5 FIG005107: hypothetical protein compare
Pf1N1B4_4851 -1.1 -1.4 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_3858 -1.1 -3.4 FIG00954563: hypothetical protein compare
Pf1N1B4_5442 -1.1 -3.8 hypothetical protein compare
Pf1N1B4_762 -1.1 -4.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3907 -1.1 -1.6 FIG00953287: hypothetical protein compare
Pf1N1B4_337 -1.1 -2.5 O-antigen export system permease protein RfbD compare
Pf1N1B4_4833 -1.1 -1.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2413 -1.1 -2.0 Permeases of the major facilitator superfamily compare
Pf1N1B4_1057 -1.1 -1.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2284 -1.1 -3.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4368 -1.1 -2.5 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2432 -1.1 -1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_290 -1.1 -8.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2085 -1.1 -1.8 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_1236 -1.1 -4.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1221 -1.1 -3.8 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase compare
Pf1N1B4_4783 -1.1 -2.4 Transcriptional regulator, AraC family compare
Pf1N1B4_407 -1.1 -1.1 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare


Specific Phenotypes

For 7 genes in this experiment

For stress Benzethonium chloride in Pseudomonas fluorescens FW300-N1B4

For stress Benzethonium chloride across organisms