Experiment set3IT004 for Caulobacter crescentus NA1000

Compare to:

PYE with Tetracycline hydrochloride 0.0001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01059 +3.5 26.6 S-layer protein rsaA compare
CCNA_01712 +3.3 29.2 CopY/TcrY family transcriptional repressor compare
CCNA_01061 +3.2 13.2 type I secretion adaptor protein RsaE compare
CCNA_01060 +3.2 13.9 type I protein secretion ATP-binding protein RsaD compare
CCNA_00684 +3.1 23.4 anti-sigma factor, ChrR-family compare
CCNA_02030 +3.0 11.3 hypothetical protein compare
CCNA_01979 +3.0 19.7 LexA repressor compare
CCNA_03281 +3.0 24.5 AsnC-family transcriptional regulator compare
CCNA_00769 +3.0 12.2 TetR family transcriptional regulator compare
CCNA_00699 +2.9 17.8 LSU ribosomal protein L28P compare
CCNA_02387 +2.9 22.6 glutathione reductase compare
CCNA_02133 +2.9 14.2 glucokinase compare
CCNA_02103 +2.9 19.9 hypothetical protein compare
CCNA_03030 +2.8 17.3 cytochrome c2 compare
CCNA_03064 +2.8 16.2 PadR-family transcriptional regulator compare
CCNA_02026 +2.8 16.0 hypothetical protein compare
CCNA_03043 +2.8 9.2 type IV pilin protein pilA compare
CCNA_03858 +2.8 22.6 protein translocase subunit secB compare
CCNA_02957 +2.8 12.4 ArsR-family transcriptional regulator compare
CCNA_00161 +2.8 21.0 hypothetical protein compare
CCNA_02980 +2.6 17.3 tryptophan 2,3-dioxygenase compare
CCNA_01058 +2.6 16.3 helix-turn-helix transcriptional regulator compare
CCNA_01815 +2.6 18.5 nitrogen assimilation regulatory protein NtrC compare
CCNA_00162 +2.6 12.1 hypothetical protein compare
CCNA_03252 +2.6 18.8 CopY/TcrY-family transcriptional regulator compare
CCNA_02000 +2.6 6.5 SSU ribosomal protein S2P compare
CCNA_03012 +2.6 15.2 peroxiredoxin compare
CCNA_03287 +2.6 18.3 PadR-family transcriptional regulator compare
CCNA_01525 +2.6 13.1 flagellar biosynthesis repressor flbT compare
CCNA_02037 +2.5 19.0 ATP-dependent endopeptidase Lon compare
CCNA_00518 +2.5 13.1 LSU ribosomal protein L25P compare
CCNA_03612 +2.4 15.9 HTH XRE-family transcriptional regulator compare
CCNA_03961 +2.4 12.5 hypothetical protein compare
CCNA_01526 +2.4 9.7 flagellar biosynthesis regulatory protein flaF compare
CCNA_02644 +2.4 8.4 cell division protein FtsL compare
CCNA_03289 +2.4 19.6 HicB-family RNA-binding protein compare
CCNA_00962 +2.4 14.1 MarR-family transcriptional regulator compare
CCNA_02416 +2.4 14.1 DNA-binding protein HU compare
CCNA_01814 +2.4 17.0 nitrogen regulation protein ntrB compare
CCNA_03072 +2.4 8.7 TetR-family transcriptional regulator compare
CCNA_01840 +2.3 19.0 MerR-family transcriptional regulator compare
CCNA_01420 +2.3 12.5 NrdR family transcriptional regulator compare
CCNA_01094 +2.3 5.5 hypothetical protein compare
CCNA_00939 +2.3 8.5 MarR-family transcriptional regulator compare
CCNA_03271 +2.3 15.4 methionine gamma-lyase compare
CCNA_02328 +2.3 2.1 cell cycle regulatory protein GcrA compare
CCNA_02225 +2.3 13.0 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_03936 +2.2 5.6 hypothetical protein compare
CCNA_00999 +2.2 8.6 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_R0037 +2.2 9.4 tRNA-Glu compare
CCNA_01931 +2.2 13.8 TetR-family transcriptional regulator compare
CCNA_00924 +2.2 15.1 MarR/EmrR family transcriptional regulator compare
CCNA_03325 +2.2 9.4 hypothetical protein compare
CCNA_00011 +2.2 9.7 chaperone protein DnaJ compare
CCNA_01851 +2.2 16.7 quinol cytochrome oxidase polypeptide II compare
CCNA_01684 +2.2 12.1 phenylalanine-4-hydroxylase compare
CCNA_01751 +2.2 8.0 aminodeoxychorismate lyase compare
CCNA_02289 +2.2 17.6 MarR/EmrR family transcriptional regulator compare
CCNA_03479 +2.2 12.4 MarR-family transcriptional regulator compare
CCNA_03989 +2.2 16.5 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02732 +2.2 4.0 hypothetical protein compare
CCNA_01790 +2.2 8.4 protein translocase subunit secG compare
CCNA_00505 +2.2 10.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01942 +2.2 11.3 Rrf2 family protein compare
CCNA_01573 +2.2 10.8 ArsR-family transcriptional regulator compare
CCNA_00920 +2.1 7.8 hypothetical protein compare
CCNA_03643 +2.1 3.5 succinate dehydrogenase membrane anchor subunit compare
CCNA_01968 +2.1 9.7 pentapeptide repeats containing protein compare
CCNA_01553 +2.1 10.3 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_02646 +2.1 4.9 cell division protein MraZ compare
CCNA_01242 +2.1 15.2 amino acid permease compare
CCNA_02025 +2.1 6.5 hypothetical protein compare
CCNA_03805 +2.1 14.0 PadR-family transcriptional regulator compare
CCNA_00954 +2.1 14.5 AAA-family response regulator flbD compare
CCNA_03519 +2.1 10.1 PadR-family transcriptional regulator compare
CCNA_03129 +2.1 14.3 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_00527 +2.1 11.2 hypothetical protein compare
CCNA_02910 +2.0 16.5 TonB-dependent receptor compare
CCNA_02617 +2.0 15.6 histidinol-phosphate aminotransferase compare
CCNA_01181 +2.0 11.2 hypothetical protein compare
CCNA_03123 +2.0 13.8 ArsR-family transcriptional regulator compare
CCNA_00846 +2.0 17.2 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_03280 +2.0 17.6 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_00756 +2.0 4.3 hypothetical protein compare
CCNA_03689 +2.0 14.0 alanine dehydrogenase compare
CCNA_02448 +2.0 10.4 hypothetical protein compare
CCNA_02021 +2.0 8.1 hypothetical protein compare
CCNA_02132 +2.0 8.4 LacI-family transcriptional regulator compare
CCNA_01848 +2.0 13.4 quinol cytochrome oxidase polypeptide IV compare
CCNA_02339 +2.0 12.1 methyltransferase compare
CCNA_01801 +2.0 10.6 hypothetical protein compare
CCNA_01186 +2.0 8.0 hypothetical protein compare
CCNA_01959 +2.0 4.0 3-dehydroquinate dehydratase compare
CCNA_02075 +2.0 3.8 peptidoglycan binding endopeptidase DipM compare
CCNA_01913 +2.0 12.9 MarR-family transcriptional regulator compare
CCNA_02447 +1.9 10.6 PspA/IM30 family regulatory protein compare
CCNA_03108 +1.9 15.0 TonB-dependent outer membrane receptor compare
CCNA_02616 +1.9 12.6 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02028 +1.9 3.3 NTF2 superfamily protein compare
CCNA_01964 +1.9 4.7 NADH dehydrogenase compare
CCNA_02063 +1.9 8.8 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_00163 +1.9 11.7 exopolysaccharide transport family protein compare
CCNA_03951 +1.9 7.5 hypothetical protein compare
CCNA_01742 +1.9 7.6 hypothetical protein compare
CCNA_01361 +1.9 4.3 PepSY superfamily protein compare
CCNA_01453 +1.9 6.6 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_00521 +1.9 2.6 antitoxin protein compare
CCNA_00497 +1.9 11.1 putative rhamnosyl transferase compare
CCNA_00950 +1.9 13.7 flagellar M-ring protein FliF compare
CCNA_00375 +1.9 6.8 hypothetical protein compare
CCNA_01235 +1.9 9.9 AcrR-family transcriptional regulator compare
CCNA_01690 +1.9 6.5 MAPEG family membrane protein compare
CCNA_03464 +1.9 7.7 glycine cleavage system H protein compare
CCNA_02180 +1.9 3.8 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_02151 +1.9 7.0 exodeoxyribonuclease VII small subunit compare
CCNA_01375 +1.9 7.6 lactoylglutathione lyase compare
CCNA_03062 +1.9 11.0 cell wall hydrolase family protein compare
CCNA_03420 +1.9 9.2 hypothetical protein compare
CCNA_02591 +1.9 8.3 glutaredoxin compare
CCNA_03938 +1.8 5.3 hypothetical protein compare
CCNA_02619 +1.8 13.0 stomatin/prohibitin-related protein compare
CCNA_01804 +1.8 11.1 glutathione peroxidase compare
CCNA_01324 +1.8 6.8 LSU ribosomal protein L30P compare
CCNA_01393 +1.8 12.8 soluble lytic murein transglycosylase compare
CCNA_03863 +1.8 5.3 hypothetical protein compare
CCNA_00168 +1.8 12.8 polysaccharide export protein compare
CCNA_02576 +1.8 12.9 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_03498 +1.8 11.3 MarR-family transcriptional regulator compare
CCNA_00947 +1.8 13.8 flagellar hook protein FlgE compare
CCNA_02316 +1.8 10.6 hypothetical protein compare
CCNA_01008 +1.8 13.3 urocanate hydratase compare
CCNA_01722 +1.8 3.5 hypothetical protein compare
CCNA_00945 +1.8 9.4 chemotaxis protein MotD compare
CCNA_03832 +1.8 7.9 TetR-family transcriptional regulator compare
CCNA_01655 +1.8 9.6 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03379 +1.8 3.3 Cro/CI family transcriptional regulator compare
CCNA_01850 +1.8 14.1 quinol cytochrome oxidase polypeptide I compare
CCNA_00919 +1.8 6.2 hypothetical protein compare
CCNA_01295 +1.8 10.8 integral membrane protein compare
CCNA_01528 +1.7 10.3 flagellin fljK compare
CCNA_02836 +1.7 7.4 hypothetical protein compare
CCNA_02942 +1.7 6.6 nucleoside-diphosphate-sugar epimerase compare
CCNA_00895 +1.7 11.0 hypothetical protein compare
CCNA_00944 +1.7 9.1 flagellar hook length determination protein compare
CCNA_01541 +1.7 11.7 LysR-family transcriptional regulator compare
CCNA_03214 +1.7 10.0 hypothetical protein compare
CCNA_01063 +1.7 8.8 UDP-perosamine 4-acetyl transferase compare
CCNA_02042 +1.7 12.2 trigger factor chaperone compare
CCNA_00447 +1.7 9.1 chemotaxis protein cheD compare
CCNA_00726 +1.7 13.2 acyl-CoA dehydrogenase compare
CCNA_01679 +1.7 10.0 succinylglutamic semialdehyde dehydrogenase compare
CCNA_03089 +1.7 9.2 hypothetical protein compare
CCNA_02663 +1.7 3.1 DnaK suppressor protein DksA compare
CCNA_01057 +1.7 10.3 hypothetical protein compare
CCNA_00834 +1.7 7.3 flagellin FljM compare
CCNA_01849 +1.7 10.1 quinol cytochrome oxidase polypeptide III compare
CCNA_01677 +1.7 8.8 carboxypeptidase G2 precursor compare
CCNA_03372 +1.7 4.9 bacterioferritin-associated ferredoxin compare
CCNA_00781 +1.7 11.8 two-component receiver protein CpdR compare
CCNA_03514 +1.6 10.6 cytochrome c oxidase assembly protein ctaG compare
CCNA_01728 +1.6 8.7 short chain dehydrogenase compare
CCNA_02242 +1.6 8.8 PHB granule-associated protein, phasin2 compare
CCNA_02575 +1.6 4.0 hypothetical protein compare
CCNA_00354 +1.6 8.5 NlpC/P60 CHAP domain amidase protein compare
CCNA_00803 +1.6 6.8 chemotaxis protein cheW compare
CCNA_01619 +1.6 9.1 NYN domain protein compare
CCNA_03808 +1.6 11.2 organic solvent resistance transport system Ttg2C protein compare
CCNA_02134 +1.6 11.9 phosphogluconate dehydratase compare
CCNA_02567 +1.6 10.7 sensory transduction histidine kinase pleC compare
CCNA_01802 +1.6 4.7 hypothetical protein compare
CCNA_01199 +1.6 9.2 glucose-1-phosphate thymidylyltransferase compare
CCNA_02728 +1.6 9.3 hypothetical protein compare
CCNA_01193 +1.6 12.0 amylosucrase compare
CCNA_01339 +1.6 6.7 ArsR-family transcriptional regulator compare
CCNA_02287 +1.6 8.6 TetR-family transcriptional regulator compare
CCNA_03215 +1.6 10.8 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_02081 +1.6 5.8 Sec-independent protein translocase protein tatB compare
CCNA_01405 +1.6 5.5 GIY-YIG domain protein compare
CCNA_03959 +1.6 1.8 hypothetical protein compare
CCNA_01780 +1.6 11.3 exopolyphosphatase compare
CCNA_02004 +1.6 3.6 SOS-induced inhibitor of cell division SidA compare
CCNA_01433 +1.6 6.0 integration host factor alpha-subunit compare
CCNA_00441 +1.6 7.7 chemotaxis receiver domain protein cheYI compare
CCNA_00215 +1.6 9.4 SapC surface layer protein compare
CCNA_02330 +1.6 7.7 hypothetical protein compare
CCNA_00031 +1.6 8.4 toxin protein VapC compare
CCNA_01678 +1.6 8.6 arginine N-succinyltransferase, beta chain compare
CCNA_00675 +1.6 6.8 VapC-like PIN domain ribonuclease compare
CCNA_03515 +1.6 8.6 hypothetical protein compare
CCNA_02135 +1.6 7.3 6-phosphogluconolactonase compare
CCNA_01739 +1.6 8.3 LSU ribosomal protein L9P compare
CCNA_00149 +1.5 4.5 Cro/CI-family transcriptional regulator compare
CCNA_00207 +1.5 9.1 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
CCNA_03518 +1.5 11.7 cytochrome c oxidase polypeptide II coxB compare
CCNA_02073 +1.5 4.4 cupin domain transcriptional regulator compare
CCNA_00998 +1.5 7.4 ROS/MUCR transcriptional regulator compare
CCNA_01730 +1.5 9.3 amidophosphoribosyltransferase compare
CCNA_00164 +1.5 10.2 O-antigen polymerase compare
CCNA_03949 +1.5 7.4 hypothetical protein compare
CCNA_00670 +1.5 4.3 ABC-type polysaccharide/polyol phosphate transport system, ATPase component compare


Specific Phenotypes

For 2 genes in this experiment

For stress Tetracycline hydrochloride in Caulobacter crescentus NA1000

For stress Tetracycline hydrochloride across organisms