Experiment set3IT004 for Ralstonia sp. UNC404CL21Col

Compare to:

root sample 4; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -5.0 -3.5 NUDIX domain-containing protein compare
ABZR87_RS08695 -4.7 -5.6 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS01450 -4.4 -4.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS08630 -4.1 -2.8 dihydroorotase compare
ABZR87_RS09875 -4.0 -3.9 GNAT family protein compare
ABZR87_RS21950 -3.4 -5.4 hypothetical protein compare
ABZR87_RS13645 -3.3 -1.5 hypothetical protein compare
ABZR87_RS22920 -3.3 -3.2 phosphogluconate dehydratase compare
ABZR87_RS14500 -3.3 -9.8 tryptophan synthase subunit beta compare
ABZR87_RS21940 -3.2 -1.4 hypothetical protein compare
ABZR87_RS19010 -3.2 -2.2 acyloxyacyl hydrolase compare
ABZR87_RS02640 -3.1 -9.8 diaminopimelate decarboxylase compare
ABZR87_RS01690 -3.1 -1.3 collagen-like triple helix repeat-containing protein compare
ABZR87_RS14535 -3.1 -3.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14115 -3.0 -3.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS15715 -3.0 -5.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS08915 -2.9 -2.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS14540 -2.9 -4.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02655 -2.9 -7.9 anti-sigma factor compare
ABZR87_RS02590 -2.8 -6.5 3-dehydroquinate synthase compare
ABZR87_RS14490 -2.7 -5.3 tryptophan synthase subunit alpha compare
ABZR87_RS22910 -2.7 -2.4 6-phosphogluconolactonase compare
ABZR87_RS13790 -2.7 -5.9 chorismate synthase compare
ABZR87_RS03865 -2.6 -8.7 GntR family transcriptional regulator compare
ABZR87_RS08645 -2.6 -1.1 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS15065 -2.5 -3.3 TMEM165/GDT1 family protein compare
ABZR87_RS07380 -2.5 -8.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02595 -2.5 -8.5 shikimate kinase compare
ABZR87_RS14505 -2.4 -3.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS12970 -2.4 -3.7 putative holin compare
ABZR87_RS16860 -2.4 -1.2 response regulator compare
ABZR87_RS02145 -2.4 -2.3 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS09465 -2.3 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS08990 -2.3 -3.6 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS05645 -2.3 -2.3 SDR family oxidoreductase compare
ABZR87_RS05100 -2.3 -3.2 RNA polymerase-binding protein DksA compare
ABZR87_RS06350 -2.3 -8.3 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS06715 -2.3 -3.5 PTS sugar transporter subunit IIA compare
ABZR87_RS05305 -2.2 -7.6 TetR family transcriptional regulator compare
ABZR87_RS08970 -2.2 -3.7 protein TolQ compare
ABZR87_RS22325 -2.2 -3.5 H-NS histone family protein compare
ABZR87_RS08980 -2.2 -2.6 cell envelope integrity protein TolA compare
ABZR87_RS13250 -2.2 -2.5 phosphoserine phosphatase SerB compare
ABZR87_RS00625 -2.2 -1.6 hypothetical protein compare
ABZR87_RS03930 -2.2 -1.8 glycine cleavage system protein GcvH compare
ABZR87_RS11735 -2.1 -1.3 chitin-binding domain-containing protein compare
ABZR87_RS02155 -2.1 -5.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS02565 -2.1 -4.0 glutamate synthase subunit beta compare
ABZR87_RS08985 -2.1 -5.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS11755 -2.0 -1.8 arsenate reductase compare
ABZR87_RS00435 -2.0 -1.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS03850 -2.0 -5.0 ureidoglycolate lyase compare
ABZR87_RS14190 -2.0 -7.2 DUF2589 domain-containing protein compare
ABZR87_RS09445 -2.0 -6.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS13705 -2.0 -1.4 integration host factor subunit alpha compare
ABZR87_RS11245 -2.0 -3.0 translational GTPase TypA compare
ABZR87_RS05200 -1.9 -10.4 homoserine O-acetyltransferase compare
ABZR87_RS02380 -1.9 -6.6 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS00865 -1.9 -1.4 VTT domain-containing protein compare
ABZR87_RS02140 -1.9 -10.4 anthranilate synthase component I compare
ABZR87_RS20875 -1.9 -4.8 LysR family transcriptional regulator compare
ABZR87_RS04270 -1.9 -3.4 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS02485 -1.9 -1.1 MarC family protein compare
ABZR87_RS08795 -1.9 -1.8 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS02570 -1.8 -12.2 glutamate synthase-related protein compare
ABZR87_RS10170 -1.8 -3.3 RseA family anti-sigma factor compare
ABZR87_RS12965 -1.8 -3.8 tail protein X compare
ABZR87_RS10980 -1.8 -1.1 tRNA-Leu compare
ABZR87_RS06825 -1.8 -1.5 twin transmembrane helix small protein compare
ABZR87_RS07005 -1.8 -1.2 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS16055 -1.8 -4.6 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS02160 -1.8 -2.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS11330 -1.8 -2.9 transcriptional repressor LexA compare
ABZR87_RS22970 -1.7 -7.0 cystathionine gamma-synthase family protein compare
ABZR87_RS20680 -1.7 -2.4 SDR family oxidoreductase compare
ABZR87_RS14530 -1.7 -4.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS08070 -1.7 -1.5 pyruvate kinase compare
ABZR87_RS14965 -1.7 -2.3 DUF3619 family protein compare
ABZR87_RS09515 -1.7 -1.2 cysteine synthase CysM compare
ABZR87_RS12955 -1.7 -4.7 terminase endonuclease subunit compare
ABZR87_RS16080 -1.7 -1.7 P-II family nitrogen regulator compare
ABZR87_RS14890 -1.7 -1.0 preprotein translocase subunit SecG compare
ABZR87_RS13540 -1.7 -1.9 DUF1488 family protein compare
ABZR87_RS02545 -1.7 -2.8 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS07360 -1.7 -6.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09450 -1.6 -4.9 prephenate dehydratase compare
ABZR87_RS08380 -1.6 -2.4 RidA family protein compare
ABZR87_RS09895 -1.6 -1.1 DUF1841 family protein compare
ABZR87_RS13285 -1.6 -7.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS02445 -1.6 -2.2 Sec-independent protein translocase protein TatB compare
ABZR87_RS08505 -1.6 -1.9 CpaE family protein compare
ABZR87_RS01745 -1.6 -2.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS18165 -1.6 -1.4 hypothetical protein compare
ABZR87_RS07050 -1.6 -1.1 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08875 -1.6 -2.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABZR87_RS16170 -1.5 -1.1 argininosuccinate lyase compare
ABZR87_RS23470 -1.5 -1.9 malonate decarboxylase holo-ACP synthase compare
ABZR87_RS17310 -1.5 -4.0 PadR family transcriptional regulator compare
ABZR87_RS20880 -1.5 -5.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS12960 -1.5 -1.1 head completion/stabilization protein compare
ABZR87_RS01645 -1.5 -3.0 type II 3-dehydroquinate dehydratase compare
ABZR87_RS07215 -1.5 -1.6 hotdog family protein compare
ABZR87_RS21565 -1.4 -4.0 cupin domain-containing protein compare
ABZR87_RS16960 -1.4 -1.0 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS10175 -1.4 -3.4 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS00205 -1.4 -1.3 DUF934 domain-containing protein compare
ABZR87_RS11015 -1.4 -2.5 amino-acid N-acetyltransferase compare
ABZR87_RS15240 -1.4 -1.6 YicC/YloC family endoribonuclease compare
ABZR87_RS08665 -1.4 -4.8 GNAT family N-acetyltransferase compare
ABZR87_RS12950 -1.4 -4.6 phage major capsid protein, P2 family compare
ABZR87_RS19305 -1.4 -1.3 SctK family type III secretion system sorting platform protein compare
ABZR87_RS00220 -1.4 -6.4 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00385 -1.4 -1.1 response regulator transcription factor compare
ABZR87_RS06710 -1.4 -8.7 glutathione synthase compare
ABZR87_RS13475 -1.4 -3.4 PAS domain S-box protein compare
ABZR87_RS11150 -1.4 -3.8 cytochrome-c oxidase, cbb3-type subunit II compare
ABZR87_RS00295 -1.4 -2.9 ABC transporter ATP-binding protein compare
ABZR87_RS23225 -1.3 -3.9 sugar ABC transporter permease compare
ABZR87_RS06705 -1.3 -6.8 glutamate--cysteine ligase compare
ABZR87_RS11980 -1.3 -0.8 cold-shock protein compare
ABZR87_RS02550 -1.3 -2.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS03925 -1.3 -3.9 glycine cleavage system aminomethyltransferase GcvT compare
ABZR87_RS22035 -1.3 -1.9 hypothetical protein compare
ABZR87_RS13290 -1.3 -3.3 3-ketoacyl-ACP reductase compare
ABZR87_RS06400 -1.3 -3.7 response regulator transcription factor compare
ABZR87_RS04865 -1.3 -1.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02440 -1.3 -3.8 twin-arginine translocase subunit TatC compare
ABZR87_RS13770 -1.3 -5.5 CoA transferase subunit A compare
ABZR87_RS13205 -1.3 -1.4 hypothetical protein compare
ABZR87_RS09585 -1.3 -2.2 hypothetical protein compare
ABZR87_RS11440 -1.3 -4.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS14235 -1.2 -3.7 formyltetrahydrofolate deformylase compare
ABZR87_RS05990 -1.2 -2.0 AraC family transcriptional regulator compare
ABZR87_RS18695 -1.2 -5.2 sugar-binding transcriptional regulator compare
ABZR87_RS02375 -1.2 -4.6 cytochrome c1 compare
ABZR87_RS13300 -1.2 -2.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS09000 -1.2 -4.1 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS12785 -1.2 -1.9 endopeptidase La compare
ABZR87_RS21285 -1.2 -1.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07355 -1.2 -3.8 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS05495 -1.2 -1.0 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS10900 -1.2 -3.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS14675 -1.2 -0.7 glyoxalase compare
ABZR87_RS02680 -1.2 -5.2 c-type cytochrome compare
ABZR87_RS17270 -1.2 -1.0 hypothetical protein compare
ABZR87_RS11185 -1.2 -5.2 sulfite exporter TauE/SafE family protein compare
ABZR87_RS11010 -1.2 -1.4 oxidative damage protection protein compare
ABZR87_RS16795 -1.2 -2.2 VOC family protein compare
ABZR87_RS05060 -1.2 -2.2 DUF484 family protein compare
ABZR87_RS20555 -1.2 -3.0 helix-turn-helix transcriptional regulator compare
ABZR87_RS11160 -1.2 -3.1 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR87_RS21735 -1.2 -1.2 DUF2917 domain-containing protein compare
ABZR87_RS08640 -1.2 -3.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS06970 -1.1 -3.0 YfhL family 4Fe-4S dicluster ferredoxin compare
ABZR87_RS10700 -1.1 -3.1 C40 family peptidase compare
ABZR87_RS07320 -1.1 -3.6 gluconokinase compare
ABZR87_RS11180 -1.1 -2.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
ABZR87_RS01615 -1.1 -0.6 RNB domain-containing ribonuclease compare
ABZR87_RS04105 -1.1 -2.1 ATP synthase subunit I compare
ABZR87_RS14380 -1.1 -2.3 glutamate racemase compare
ABZR87_RS08205 -1.1 -1.0 hypothetical protein compare
ABZR87_RS02555 -1.1 -2.4 ABC transporter ATP-binding protein compare
ABZR87_RS17650 -1.1 -3.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01110 -1.1 -4.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS05570 -1.1 -3.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS12665 -1.1 -1.1 ABC transporter ATP-binding protein compare
ABZR87_RS00830 -1.1 -2.5 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS09955 -1.1 -3.8 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS16165 -1.1 -0.6 anti-sigma factor compare
ABZR87_RS06855 -1.1 -1.8 RNA polymerase sigma factor RpoH compare
ABZR87_RS04605 -1.0 -1.9 DUF2795 domain-containing protein compare
ABZR87_RS13445 -1.0 -2.4 phasin family protein compare
ABZR87_RS12145 -1.0 -2.4 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS01280 -1.0 -1.8 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS23390 -1.0 -3.8 anti-sigma factor compare
ABZR87_RS15320 -1.0 -1.5 DUF969 domain-containing protein compare
ABZR87_RS07035 -1.0 -2.5 RNase adapter RapZ compare
ABZR87_RS06840 -1.0 -3.6 COX15/CtaA family protein compare
ABZR87_RS17140 -1.0 -2.7 LysR family transcriptional regulator compare
ABZR87_RS20440 -1.0 -0.7 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS06770 -1.0 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS21280 -1.0 -2.4 nuclear transport factor 2 family protein compare
ABZR87_RS19675 -1.0 -0.8 cold-shock protein compare
ABZR87_RS10550 -1.0 -0.9 outer membrane protein assembly factor BamC compare
ABZR87_RS04940 -1.0 -1.5 PAS domain-containing sensor histidine kinase compare
ABZR87_RS05145 -1.0 -0.9 copper chaperone PCu(A)C compare
ABZR87_RS12975 -1.0 -2.1 phage holin family protein compare
ABZR87_RS03430 -1.0 -4.6 type II secretion system minor pseudopilin GspK compare
ABZR87_RS06405 -1.0 -0.8 hypothetical protein compare
ABZR87_RS09625 -1.0 -4.1 CobD/CbiB family protein compare
ABZR87_RS20160 -1.0 -1.8 OmpA family protein compare
ABZR87_RS15405 -0.9 -1.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS20075 -0.9 -1.1 DUF2892 domain-containing protein compare
ABZR87_RS07710 -0.9 -3.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS10950 -0.9 -4.4 FtsH protease activity modulator HflK compare
ABZR87_RS17570 -0.9 -1.6 hypothetical protein compare
ABZR87_RS04215 -0.9 -2.3 ABC transporter ATP-binding protein compare
ABZR87_RS13150 -0.9 -2.9 hypothetical protein compare
ABZR87_RS16130 -0.9 -2.3 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS12385 -0.9 -1.0 AraC family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment