Experiment set3IT003 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sodium Chlorite 1 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_327 -3.2 -3.1 hypothetical protein compare
Pf1N1B4_1116 -3.0 -11.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_1115 -2.9 -11.5 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_2874 -2.9 -2.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_717 -2.5 -8.0 Iron-regulated protein A precursor compare
Pf1N1B4_715 -2.5 -5.8 Iron-regulated protein A precursor compare
Pf1N1B4_3566 -2.4 -8.3 Phenylalanine-4-hydroxylase (EC 1.14.16.1) conserved
Pf1N1B4_828 -2.3 -6.1 Multicopper oxidase compare
Pf1N1B4_716 -2.3 -4.0 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_718 -2.2 -6.9 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_1457 -2.2 -9.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_1113 -2.1 -6.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1294 -2.1 -3.1 VgrG protein compare
Pf1N1B4_1863 -2.1 -9.7 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_1456 -2.1 -8.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_3091 -2.0 -4.6 Membrane-associated zinc metalloprotease compare
Pf1N1B4_1683 -1.9 -2.5 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_644 -1.9 -2.2 Cold shock protein CspC compare
Pf1N1B4_769 -1.9 -6.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_763 -1.9 -4.4 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_2917 -1.9 -8.4 FIG140336: TPR domain protein compare
Pf1N1B4_1511 -1.8 -2.9 FIG027190: Putative transmembrane protein compare
Pf1N1B4_2233 -1.8 -6.6 Ferric iron ABC transporter, permease protein conserved
Pf1N1B4_1619 -1.8 -9.2 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_1614 -1.8 -3.1 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_1335 -1.8 -6.7 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_762 -1.8 -6.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3549 -1.8 -2.8 YciL protein compare
Pf1N1B4_1263 -1.7 -3.0 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_3567 -1.7 -8.5 Phenylalanine hydroxylase transcriptional activator PhhR conserved
Pf1N1B4_1370 -1.7 -1.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_65 -1.7 -5.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_3143 -1.6 -3.5 RecA protein compare
Pf1N1B4_2071 -1.6 -2.6 Protein phosphatase ImpM compare
Pf1N1B4_3559 -1.6 -10.2 Aromatic amino acid transport protein AroP compare
Pf1N1B4_4566 -1.6 -3.0 Universal stress protein family 7 compare
Pf1N1B4_3582 -1.6 -2.0 C-methyltransferase compare
Pf1N1B4_5032 -1.6 -3.8 Hypothetical protein PA2244 (similar to DNA topoisomerase IB, but possibly involved in glycosyl-transfer) compare
Pf1N1B4_1569 -1.6 -9.4 Twin-arginine translocation protein TatC compare
Pf1N1B4_348 -1.5 -4.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_5720 -1.5 -2.5 hypothetical protein compare
Pf1N1B4_1057 -1.5 -2.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_5864 -1.5 -2.5 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_1544 -1.4 -6.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_106 -1.4 -3.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4636 -1.4 -2.3 TPR domain protein in aerotolerance operon compare
Pf1N1B4_3833 -1.4 -6.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1554 -1.4 -5.6 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_4029 -1.4 -3.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_567 -1.4 -2.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_1336 -1.4 -1.7 Putative multicopper oxidases compare
Pf1N1B4_1906 -1.3 -3.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4035 -1.3 -2.3 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2163 -1.3 -1.6 hypothetical protein compare
Pf1N1B4_1608 -1.3 -2.3 FIG00956533: hypothetical protein compare
Pf1N1B4_3350 -1.3 -2.1 FIG00954807: hypothetical protein compare
Pf1N1B4_656 -1.3 -5.9 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_4381 -1.3 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_5224 -1.3 -2.9 tRNA-Arg-CCT compare
Pf1N1B4_3911 -1.3 -3.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_3044 -1.3 -3.0 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf1N1B4_1307 -1.2 -2.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1042 -1.2 -3.0 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_483 -1.2 -2.7 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_4028 -1.2 -3.3 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4870 -1.2 -1.8 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_4799 -1.2 -2.6 Multidrug resistance protein B compare
Pf1N1B4_2105 -1.2 -2.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2232 -1.2 -3.0 Ferric iron ABC transporter, iron-binding protein compare
Pf1N1B4_3775 -1.2 -1.6 FIG00956876: hypothetical protein compare
Pf1N1B4_2173 -1.2 -2.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_606 -1.2 -1.9 Iron siderophore sensor protein compare
Pf1N1B4_1568 -1.2 -2.4 Twin-arginine translocation protein TatB compare
Pf1N1B4_3685 -1.2 -3.6 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_561 -1.1 -2.7 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_1114 -1.1 -3.7 ABC transporter, ATP-binding protein compare
Pf1N1B4_4039 -1.1 -4.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4040 -1.1 -2.4 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2856 -1.1 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2886 -1.1 -7.4 Paraquat-inducible protein B compare
Pf1N1B4_1403 -1.1 -5.1 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_175 -1.1 -1.9 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1891 -1.1 -1.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_262 -1.1 -8.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_5725 -1.1 -1.7 High-affinity iron permease compare
Pf1N1B4_3624 -1.1 -3.3 Flagellar biosynthesis protein FlhF compare
Pf1N1B4_4516 -1.0 -1.6 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_4041 -1.0 -2.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4731 -1.0 -2.7 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1566 -1.0 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2486 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_4509 -1.0 -2.0 Aldose 1-epimerase compare
Pf1N1B4_2442 -1.0 -2.6 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_1963 -1.0 -3.2 O-antigen export system permease protein RfbD compare
Pf1N1B4_3595 -1.0 -1.7 Flagellin protein FlaG compare
Pf1N1B4_3325 -1.0 -1.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_4569 -1.0 -2.2 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_5823 -1.0 -1.5 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_6041 -1.0 -1.8 Carbon storage regulator compare
Pf1N1B4_2352 -1.0 -4.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_835 -1.0 -2.1 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_4170 -1.0 -3.0 putative oxidoreductase compare
Pf1N1B4_5838 -1.0 -1.9 FIG00956589: hypothetical protein compare
Pf1N1B4_260 -1.0 -2.7 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_4352 -1.0 -2.3 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_493 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_5779 -1.0 -1.6 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_4257 -1.0 -2.0 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4999 -0.9 -1.8 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_3074 -0.9 -1.1 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_6013 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_1011 -0.9 -3.3 ribosomal subunit interface protein, putative compare
Pf1N1B4_128 -0.9 -2.0 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_3647 -0.9 -5.7 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_5675 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_2674 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_5152 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_4855 -0.9 -1.9 Response regulator compare
Pf1N1B4_2080 -0.9 -2.9 hypothetical protein compare
Pf1N1B4_2036 -0.9 -2.2 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_1118 -0.9 -1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5043 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_3975 -0.9 -1.5 Transcriptional regulator, IclR family compare
Pf1N1B4_1705 -0.9 -1.6 SAM-dependent methyltransferases compare
Pf1N1B4_1463 -0.9 -5.0 hypothetical protein compare
Pf1N1B4_275 -0.9 -1.8 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2761 -0.9 -3.3 putative Cytochrome bd2, subunit II compare
Pf1N1B4_1565 -0.9 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5542 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_4487 -0.9 -1.5 FIG00955631: hypothetical protein compare
Pf1N1B4_5560 -0.9 -0.8 hypothetical protein compare
Pf1N1B4_2526 -0.9 -6.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4590 -0.9 -2.2 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_3168 -0.9 -2.1 AmpG permease compare
Pf1N1B4_5925 -0.9 -5.3 hypothetical protein compare
Pf1N1B4_3005 -0.9 -5.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf1N1B4_2891 -0.9 -2.0 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_3855 -0.9 -2.2 Chromosome partition protein smc compare
Pf1N1B4_5709 -0.9 -2.2 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_2682 -0.9 -1.4 Antiholin-like protein LrgA compare
Pf1N1B4_3684 -0.8 -3.2 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_3906 -0.8 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3981 -0.8 -1.4 Predicted carboxypeptidase compare
Pf1N1B4_888 -0.8 -2.7 Transglycosylase, Slt family compare
Pf1N1B4_3447 -0.8 -3.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_4897 -0.8 -1.5 Transcriptional regulator, LysR family compare
Pf1N1B4_3541 -0.8 -2.0 FIG027190: Putative transmembrane protein compare
Pf1N1B4_4532 -0.8 -1.8 ClpB protein compare
Pf1N1B4_5724 -0.8 -1.7 High-affinity iron permease compare
Pf1N1B4_2447 -0.8 -2.7 GbcA Glycine betaine demethylase subunit A compare
Pf1N1B4_5652 -0.8 -1.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_359 -0.8 -1.7 GGDEF domain protein compare
Pf1N1B4_2283 -0.8 -1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4990 -0.8 -1.9 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_2005 -0.8 -1.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2707 -0.8 -1.7 Putative membrane protein compare
Pf1N1B4_364 -0.8 -2.6 Rhodanese domain protein UPF0176 compare
Pf1N1B4_3499 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_4802 -0.8 -1.4 polysaccharide deacetylase compare
Pf1N1B4_3498 -0.8 -1.7 FIG00953240: hypothetical protein compare
Pf1N1B4_3844 -0.8 -2.8 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) compare
Pf1N1B4_3467 -0.8 -1.4 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_399 -0.8 -1.6 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_3991 -0.8 -1.4 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_5991 -0.8 -1.7 Transcriptional regulator, AraC family compare
Pf1N1B4_5628 -0.8 -2.0 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_688 -0.8 -1.6 FIG00955483: hypothetical protein compare
Pf1N1B4_5690 -0.8 -2.5 Putative TEGT family carrier/transport protein compare
Pf1N1B4_765 -0.8 -1.8 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_5860 -0.8 -1.6 Two-component response regulator compare
Pf1N1B4_4419 -0.8 -1.2 Organosulfonate utilization protein SsuF compare
Pf1N1B4_1408 -0.8 -2.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_5071 -0.8 -1.9 FIG00959535: hypothetical protein compare
Pf1N1B4_5685 -0.8 -2.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_724 -0.8 -1.9 DNA-binding response regulator ColR compare
Pf1N1B4_1629 -0.8 -1.5 FIG00958480: hypothetical protein compare
Pf1N1B4_3508 -0.8 -2.1 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_3006 -0.8 -3.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_4533 -0.8 -1.7 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_4895 -0.8 -2.9 Putrescine ABC transporter, periplasmic putrescine-binding protein compare
Pf1N1B4_3547 -0.8 -1.1 DNA-binding response regulator compare
Pf1N1B4_1441 -0.8 -5.2 Putative esterase, FIGfam005057 compare
Pf1N1B4_1500 -0.8 -2.6 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_3980 -0.8 -1.7 Transcriptional regulator, HxlR family compare
Pf1N1B4_4759 -0.8 -0.9 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_2609 -0.8 -5.3 Catalase (EC 1.11.1.6) compare
Pf1N1B4_1540 -0.8 -2.0 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_1458 -0.8 -2.9 Probable transcription regulator Mig-14 compare
Pf1N1B4_3038 -0.8 -2.9 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4596 -0.7 -1.7 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf1N1B4_5926 -0.7 -4.8 hypothetical protein compare
Pf1N1B4_2114 -0.7 -2.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2247 -0.7 -1.8 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_4179 -0.7 -2.5 phosphoribosyltransferase compare
Pf1N1B4_4038 -0.7 -1.3 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1668 -0.7 -2.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2760 -0.7 -4.3 putative Cytochrome bd2, subunit I compare
Pf1N1B4_6030 -0.7 -2.2 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) compare
Pf1N1B4_1293 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_163 -0.7 -2.1 ADP-ribosylglycohydrolase compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium Chlorite in Pseudomonas fluorescens FW300-N1B4

For stress Sodium Chlorite across organisms