Experiment set3IT003 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sodium Chlorite 1 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_1628 +1.6 11.6 MFS permease conserved
Pf1N1B4_3413 +1.5 2.6 Transcriptional regulator, LysR family compare
Pf1N1B4_3849 +1.4 5.7 Transcriptional regulator, GntR family compare
Pf1N1B4_5014 +1.4 2.8 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_2021 +1.3 3.3 hypothetical protein compare
Pf1N1B4_733 +1.2 2.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5604 +1.1 3.0 Permeases of the major facilitator superfamily compare
Pf1N1B4_1691 +1.1 2.2 hypothetical protein compare
Pf1N1B4_3656 +1.1 1.4 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_4123 +1.1 2.2 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_267 +1.1 2.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_2339 +1.0 1.9 COG1872 compare
Pf1N1B4_4366 +1.0 2.5 hypothetical protein compare
Pf1N1B4_259 +1.0 3.2 Glutathione peroxidase family protein compare
Pf1N1B4_4523 +1.0 1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4806 +1.0 2.8 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_751 +0.9 1.3 hypothetical protein compare
Pf1N1B4_2177 +0.9 1.3 FIG00953342: hypothetical protein compare
Pf1N1B4_5331 +0.9 2.3 hypothetical protein compare
Pf1N1B4_5591 +0.8 2.1 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_139 +0.8 2.1 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_1446 +0.8 2.8 Predicted hydroxymethylpyrimidine transporter CytX compare
Pf1N1B4_441 +0.8 2.3 hypothetical protein compare
Pf1N1B4_74 +0.8 2.1 hypothetical protein compare
Pf1N1B4_2791 +0.8 2.0 Putative inner membrane protein (Fragment) compare
Pf1N1B4_649 +0.8 2.5 Small-conductance mechanosensitive channel compare
Pf1N1B4_4149 +0.8 2.6 Probable lipoprotein signal peptide compare
Pf1N1B4_4436 +0.8 1.6 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_114 +0.8 1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_4096 +0.8 2.6 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_629 +0.8 1.9 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_3767 +0.7 2.7 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf1N1B4_3722 +0.7 1.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2695 +0.7 1.9 Rare lipoprotein A precursor compare
Pf1N1B4_4511 +0.7 2.0 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) compare
Pf1N1B4_3742 +0.7 1.5 Oxidoreductase, zinc-binding compare
Pf1N1B4_2534 +0.7 2.0 DnaJ-like protein DjlA compare
Pf1N1B4_5255 +0.7 2.1 hypothetical protein compare
Pf1N1B4_814 +0.7 1.7 Transcriptional regulator, PadR family compare
Pf1N1B4_237 +0.7 2.1 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_5522 +0.7 3.3 hypothetical protein compare
Pf1N1B4_5884 +0.7 1.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_2154 +0.7 2.1 hypothetical protein compare
Pf1N1B4_5797 +0.7 1.7 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_5187 +0.7 1.3 5S RNA compare
Pf1N1B4_3538 +0.7 1.6 Transcriptional regulator, AraC family compare
Pf1N1B4_4755 +0.7 2.0 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_4594 +0.7 1.7 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_140 +0.7 2.2 PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV) compare
Pf1N1B4_4866 +0.7 1.3 hypothetical protein compare
Pf1N1B4_4715 +0.7 1.3 Transcriptional regulator compare
Pf1N1B4_1785 +0.7 2.3 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_3693 +0.7 3.4 Pirin compare
Pf1N1B4_5533 +0.7 2.3 cobS protein, putative compare
Pf1N1B4_2102 +0.7 1.5 hypothetical protein compare
Pf1N1B4_4982 +0.7 1.5 Transcriptional regulator, AraC family compare
Pf1N1B4_1958 +0.7 1.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4837 +0.7 1.9 hypothetical protein compare
Pf1N1B4_3612 +0.7 2.1 Flagellar hook-length control protein FliK compare
Pf1N1B4_2054 +0.7 2.5 FIG00964469: hypothetical protein compare
Pf1N1B4_5057 +0.7 2.4 mandelate racemase family protein Pfl_3283 compare
Pf1N1B4_2314 +0.7 1.6 FIG028932: hypothetical protein compare
Pf1N1B4_4828 +0.7 1.8 hypothetical protein compare
Pf1N1B4_2980 +0.7 2.1 Acetylornithine aminotransferase (EC 2.6.1.11) compare
Pf1N1B4_2453 +0.7 1.4 hypothetical protein compare
Pf1N1B4_183 +0.7 2.5 Major facilitator family transporter compare
Pf1N1B4_63 +0.7 1.6 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_4778 +0.7 2.3 NADH pyrophosphatase (EC 3.6.1.22) compare
Pf1N1B4_3928 +0.7 2.1 FIG00955661: hypothetical protein compare
Pf1N1B4_2820 +0.7 2.2 FIG00953647: hypothetical protein compare
Pf1N1B4_673 +0.6 2.2 MoxR-like ATPases compare
Pf1N1B4_5722 +0.6 1.6 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_611 +0.6 1.9 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_90 +0.6 2.6 Putative outer membrane lipoprotein compare
Pf1N1B4_625 +0.6 2.7 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_3525 +0.6 1.6 hydrolase, alpha/beta fold family compare
Pf1N1B4_2412 +0.6 2.3 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_5674 +0.6 1.8 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_2776 +0.6 1.2 Transcriptional regulator, GntR family compare
Pf1N1B4_5365 +0.6 2.0 hypothetical protein compare
Pf1N1B4_4522 +0.6 1.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf1N1B4_4603 +0.6 1.4 hypothetical protein compare
Pf1N1B4_932 +0.6 0.9 FIG00963370: hypothetical protein compare
Pf1N1B4_5030 +0.6 2.8 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_2195 +0.6 1.5 Small-conductance mechanosensitive channel compare
Pf1N1B4_241 +0.6 1.6 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_4527 +0.6 1.5 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_2983 +0.6 2.1 hypothetical protein compare
Pf1N1B4_3396 +0.6 1.6 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_5283 +0.6 1.4 hypothetical protein compare
Pf1N1B4_3526 +0.6 2.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_3588 +0.6 1.6 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_3403 +0.6 1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_4473 +0.6 1.4 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2954 +0.6 2.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1094 +0.6 1.6 FIG005080: Possible exported protein compare
Pf1N1B4_3263 +0.6 2.5 FIG126011: Hypothetical protein compare
Pf1N1B4_3517 +0.6 1.4 hypothetical protein compare
Pf1N1B4_2214 +0.6 1.8 Transcriptional regulator, GntR family compare
Pf1N1B4_1348 +0.6 1.4 Urease accessory protein UreD compare
Pf1N1B4_1389 +0.6 1.6 Lysine decarboxylase family compare
Pf1N1B4_3998 +0.6 1.8 putative exported protein compare
Pf1N1B4_2724 +0.6 3.2 Transcriptional regulator, AsnC family compare
Pf1N1B4_5416 +0.6 2.7 hypothetical protein compare
Pf1N1B4_1356 +0.6 2.7 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Pf1N1B4_446 +0.6 2.1 Thymidylate kinase (EC 2.7.4.9) compare
Pf1N1B4_3448 +0.6 1.8 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf1N1B4_3766 +0.6 2.8 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_1087 +0.6 2.8 FOG: TPR repeat compare
Pf1N1B4_1353 +0.6 2.1 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_2307 +0.6 2.1 LSU m5C1962 methyltransferase RlmI compare
Pf1N1B4_1386 +0.6 2.3 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) compare
Pf1N1B4_5266 +0.6 1.1 hypothetical protein compare
Pf1N1B4_5397 +0.6 3.9 hypothetical protein compare
Pf1N1B4_4328 +0.6 2.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_2924 +0.6 1.8 FIG00955589: hypothetical protein compare
Pf1N1B4_817 +0.6 1.5 FIG00955104: hypothetical protein compare
Pf1N1B4_1636 +0.6 1.0 FIG00954739: hypothetical protein compare
Pf1N1B4_3130 +0.6 1.7 Bacteriophage protein GP46 compare
Pf1N1B4_3509 +0.6 2.8 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) compare
Pf1N1B4_2360 +0.6 1.3 hypothetical protein compare
Pf1N1B4_2807 +0.5 1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_4790 +0.5 2.1 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
Pf1N1B4_4551 +0.5 1.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_5407 +0.5 1.1 hypothetical protein compare
Pf1N1B4_3794 +0.5 1.7 hypothetical protein compare
Pf1N1B4_4604 +0.5 1.1 FMN reductase, NADPH-dependent compare
Pf1N1B4_1256 +0.5 1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_108 +0.5 1.4 FIG00954456: hypothetical protein compare
Pf1N1B4_984 +0.5 1.8 Alginate biosynthesis protein Alg44 compare
Pf1N1B4_5978 +0.5 2.3 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) compare
Pf1N1B4_2112 +0.5 4.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_4685 +0.5 2.1 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) compare
Pf1N1B4_4350 +0.5 2.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf1N1B4_904 +0.5 1.0 DNA-binding protein HU-beta compare
Pf1N1B4_4455 +0.5 1.4 FIG00953528: hypothetical protein compare
Pf1N1B4_3630 +0.5 2.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4974 +0.5 1.6 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_5133 +0.5 1.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_1756 +0.5 1.3 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_2369 +0.5 2.0 Malonate transporter, MadM subunit compare
Pf1N1B4_4445 +0.5 1.9 acetyltransferase, GNAT family compare
Pf1N1B4_1388 +0.5 1.6 Azurin compare
Pf1N1B4_2944 +0.5 1.6 FIG00955938: hypothetical protein compare
Pf1N1B4_3872 +0.5 3.3 Putative analog of CcoH, COG3198 compare
Pf1N1B4_176 +0.5 2.0 Acetylpolyamine aminohydrolase compare
Pf1N1B4_5306 +0.5 1.3 hypothetical protein compare
Pf1N1B4_2400 +0.5 1.2 FIG00955006: hypothetical protein compare
Pf1N1B4_4247 +0.5 1.8 D-aminopeptidase (EC 3.4.11.19) compare
Pf1N1B4_3461 +0.5 1.0 hypothetical protein compare
Pf1N1B4_4959 +0.5 2.4 Protein containing domains DUF403 compare
Pf1N1B4_1590 +0.5 2.3 Histidine utilization repressor compare
Pf1N1B4_1837 +0.5 0.7 Osmotically inducible protein C compare
Pf1N1B4_358 +0.5 2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_3637 +0.5 1.6 FlhB domain protein compare
Pf1N1B4_1833 +0.5 2.0 FIG00953718: hypothetical protein compare
Pf1N1B4_4669 +0.5 1.1 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_1887 +0.5 1.3 probable exported protein YPO0432 compare
Pf1N1B4_4682 +0.5 2.2 Glycogen debranching enzyme (EC 3.2.1.-) compare
Pf1N1B4_4964 +0.5 1.5 Tricarboxylate transport protein TctB compare
Pf1N1B4_4554 +0.5 1.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_5640 +0.5 1.5 Transcriptional regulator, IclR family compare
Pf1N1B4_1609 +0.5 1.4 FIG00953806: hypothetical protein compare
Pf1N1B4_3148 +0.5 2.0 FIG074102: hypothetical protein compare
Pf1N1B4_4180 +0.5 1.8 Phosphoribosyl transferase domain protein compare
Pf1N1B4_4928 +0.5 2.3 Ferredoxin reductase compare
Pf1N1B4_1487 +0.5 2.9 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter compare
Pf1N1B4_4688 +0.5 2.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_110 +0.5 2.1 Queuosine biosynthesis QueD, PTPS-I compare
Pf1N1B4_5243 +0.5 1.3 hypothetical protein compare
Pf1N1B4_3135 +0.5 1.8 Prophage tail fiber protein compare
Pf1N1B4_97 +0.5 2.7 Selenide,water dikinase (EC 2.7.9.3) compare
Pf1N1B4_5769 +0.5 1.1 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_2950 +0.5 2.8 Methyl-accepting chemotaxis protein compare
Pf1N1B4_3977 +0.5 1.8 RNA polymerase sigma-54 factor RpoN compare
Pf1N1B4_13 +0.5 1.5 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2537 +0.5 1.7 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf1N1B4_4260 +0.5 1.8 FIG00965772: hypothetical protein compare
Pf1N1B4_1541 +0.5 2.3 Type IV pilus biogenesis protein PilO compare
Pf1N1B4_1246 +0.5 1.1 FIG00954047: hypothetical protein compare
Pf1N1B4_3260 +0.5 1.4 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_5090 +0.5 1.5 glycosyl transferase, family 2 compare
Pf1N1B4_1975 +0.5 1.1 Transcriptional regulator, AsnC family compare
Pf1N1B4_3972 +0.5 1.5 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_4698 +0.5 2.2 rfbN protein compare
Pf1N1B4_3023 +0.5 1.0 hypothetical protein compare
Pf1N1B4_4169 +0.5 1.6 Hydrolases of the alpha/beta superfamily compare
Pf1N1B4_1632 +0.5 2.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_4047 +0.5 2.2 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf1N1B4_3435 +0.5 1.0 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_1625 +0.5 1.7 FIG00956267: hypothetical protein compare
Pf1N1B4_4402 +0.5 1.6 SoxH protein, homolog compare
Pf1N1B4_4903 +0.5 1.4 ABC-type protease exporter, outer membrane component PrtF/AprF compare
Pf1N1B4_54 +0.5 2.1 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Pf1N1B4_5061 +0.5 1.8 Valyl-tRNA synthetase compare
Pf1N1B4_702 +0.5 1.9 Transcriptional regulator PobR, AraC family compare
Pf1N1B4_2544 +0.5 3.0 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf1N1B4_5280 +0.5 2.7 Nucleoid-associated protein compare
Pf1N1B4_2370 +0.5 1.6 Malonate utilization transcriptional regulator compare
Pf1N1B4_823 +0.5 1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium Chlorite in Pseudomonas fluorescens FW300-N1B4

For stress Sodium Chlorite across organisms