Experiment set3IT002 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Puromycin dihydrochloride 0.006 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -5.4 -5.2 chromosomal replication initiator protein DnaA compare
BBR_RS12545 -3.9 -4.6 DUF4012 domain-containing protein compare
BBR_RS10620 -3.3 -5.5 phosphoprotein phosphatase compare
BBR_RS18745 -3.3 -2.3 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS19450 -2.9 -2.0 GTPase ObgE compare
BBR_RS15085 -2.8 -2.6 3-dehydroquinate synthase compare
BBR_RS19465 -2.8 -4.3 ribonuclease E/G compare
BBR_RS18180 -2.6 -11.5 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS11540 -2.5 -4.4 DUF1727 domain-containing protein compare
BBR_RS19760 -2.2 -2.6 polysaccharide ABC transporter ATPase compare
BBR_RS19435 -2.1 -2.8 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS13805 -2.1 -3.4 hypothetical protein compare
BBR_RS18565 -2.1 -2.0 CHAP domain-containing protein compare
BBR_RS13370 -2.1 -3.3 phosphoribosylamine--glycine ligase compare
BBR_RS12590 -2.0 -3.0 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS13035 -2.0 -1.3 ABC transporter permease compare
BBR_RS16490 -2.0 -5.2 polyprenyl synthase compare
BBR_RS11720 -2.0 -5.6 DUF2469 domain-containing protein compare
BBR_RS14215 -1.9 -2.8 peptidase compare
BBR_RS19190 -1.9 -7.0 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS13030 -1.8 -1.3 cell division ATP-binding protein FtsE compare
BBR_RS14190 -1.8 -7.7 transcriptional regulator compare
BBR_RS11675 -1.7 -2.0 hypothetical protein compare
BBR_RS14265 -1.7 -4.7 Solute-binding protein of ABC transporter system for metals compare
BBR_RS10940 -1.7 -11.3 DedA family protein compare
BBR_RS16135 -1.7 -3.0 peptide deformylase compare
BBR_RS19815 -1.7 -13.5 ABC transporter permease compare
BBR_RS19125 -1.7 -5.8 hypothetical protein compare
BBR_RS19120 -1.7 -7.8 helicase compare
BBR_RS18575 -1.7 -4.0 hypothetical protein compare
BBR_RS16220 -1.6 -1.6 DNA cytosine methyltransferase compare
BBR_RS14540 -1.6 -3.0 Na+/H+ antiporter NhaA compare
BBR_RS15520 -1.6 -3.3 shikimate 5-dehydrogenase compare
BBR_RS16955 -1.6 -2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS21015 -1.5 -1.5 hypothetical protein compare
BBR_RS20460 -1.5 -4.2 chromosome partitioning protein ParB compare
BBR_RS19820 -1.5 -12.1 ATP-binding protein of ABC transporter system compare
BBR_RS11590 -1.5 -1.2 30S ribosomal protein S18 compare
BBR_RS18050 -1.5 -2.5 threonylcarbamoyl-AMP synthase compare
BBR_RS13490 -1.5 -2.0 30S ribosomal protein S7 compare
BBR_RS17290 -1.4 -6.7 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS16625 -1.4 -4.1 DUF3710 domain-containing protein compare
BBR_RS16950 -1.4 -2.8 hypothetical protein compare
BBR_RS10580 -1.4 -4.0 septation inhibitor protein compare
BBR_RS18215 -1.4 -7.6 AI-2E family transporter compare
BBR_RS12045 -1.4 -4.5 hypothetical protein compare
BBR_RS16675 -1.4 -3.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS17505 -1.4 -8.4 VWA domain-containing protein compare
BBR_RS13070 -1.4 -1.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS17490 -1.4 -9.6 MoxR family ATPase compare
BBR_RS16425 -1.4 -2.0 DUF3071 domain-containing protein compare
BBR_RS14070 -1.4 -5.1 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS17155 -1.4 -1.5 cell division protein SepF compare
BBR_RS16540 -1.4 -6.2 XRE family transcriptional regulator compare
BBR_RS19540 -1.3 -1.3 homoserine dehydrogenase compare
BBR_RS20850 -1.3 -1.0 resolvase compare
BBR_RS14260 -1.3 -1.6 ABC transporter ATP-binding protein compare
BBR_RS15055 -1.2 -2.7 hypothetical protein compare
BBR_RS17495 -1.2 -7.3 DUF58 domain-containing protein compare
BBR_RS12605 -1.2 -3.2 glycosyltransferase family 2 protein compare
BBR_RS20465 -1.2 -5.2 chromosome partitioning protein compare
BBR_RS16275 -1.2 -1.9 leucine--tRNA ligase compare
BBR_RS13040 -1.2 -0.8 CHAP domain-containing protein compare
BBR_RS10625 -1.2 -2.1 FHA domain-containing protein compare
BBR_RS17640 -1.2 -1.9 DNA-directed RNA polymerase subunit omega compare
BBR_RS14625 -1.1 -5.1 pyrroline-5-carboxylate reductase compare
BBR_RS15090 -1.1 -1.2 type II 3-dehydroquinate dehydratase compare
BBR_RS14370 -1.1 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS19740 -1.1 -9.6 DUF2142 domain-containing protein compare
BBR_RS11770 -1.1 -3.5 chorismate mutase compare
BBR_RS16905 -1.1 -3.1 hypothetical protein compare
BBR_RS13455 -1.1 -2.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS17500 -1.1 -3.8 hypothetical protein compare
BBR_RS18735 -1.1 -5.8 hypothetical protein compare
BBR_RS18690 -1.1 -5.1 diacylglycerol kinase compare
BBR_RS10900 -1.0 -1.0 molecular chaperone DnaK compare
BBR_RS12900 -1.0 -1.5 DeoR/GlpR transcriptional regulator compare
BBR_RS10905 -1.0 -3.7 nucleotide exchange factor GrpE compare
BBR_RS14240 -1.0 -3.8 1,4-alpha-glucan branching protein GlgB compare
BBR_RS12305 -1.0 -4.9 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS17515 -0.9 -4.3 hypothetical protein compare
BBR_RS12905 -0.9 -1.6 galactose-1-phosphate uridylyltransferase compare
BBR_RS17510 -0.9 -4.9 VWA domain-containing protein compare
BBR_RS19160 -0.9 -1.3 phosphate ABC transporter permease subunit PstC compare
BBR_RS15455 -0.9 -1.5 orotate phosphoribosyltransferase compare
BBR_RS18045 -0.9 -1.2 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS20955 -0.9 -0.7 hypothetical protein compare
BBR_RS16640 -0.9 -2.2 ABC transporter permease compare
BBR_RS13960 -0.9 -1.8 thiamine biosynthesis protein ThiS compare
BBR_RS19395 -0.9 -1.8 hypothetical protein compare
BBR_RS15435 -0.8 -2.4 dihydroorotase compare
BBR_RS11175 -0.8 -6.3 penicillin-binding protein compare
BBR_RS16635 -0.8 -1.4 ABC transporter ATP-binding protein compare
BBR_RS16040 -0.8 -2.3 hypothetical protein compare
BBR_RS15450 -0.8 -2.8 dihydroorotate dehydrogenase compare
BBR_RS11595 -0.8 -2.4 50S ribosomal protein L9 compare
BBR_RS19535 -0.8 -6.7 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS14075 -0.8 -4.4 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS16985 -0.8 -2.5 transcriptional repressor LexA compare
BBR_RS20920 -0.8 -3.3 hypothetical protein compare
BBR_RS14280 -0.8 -2.2 dephospho-CoA kinase compare
BBR_RS19755 -0.8 -5.1 glycosyl transferase compare
BBR_RS19155 -0.8 -4.4 phosphate ABC transporter, permease protein PstA compare
BBR_RS15130 -0.8 -1.4 metal-sulfur cluster assembly factor compare
BBR_RS11970 -0.8 -1.5 Phage transcriptional regulator compare
BBR_RS15070 -0.8 -2.3 endolytic transglycosylase MltG compare
BBR_RS14200 -0.7 -2.4 WhiB family transcriptional regulator compare
BBR_RS12235 -0.7 -0.9 hypothetical protein compare
BBR_RS16430 -0.7 -1.7 nucleotide pyrophosphatase compare
BBR_RS14210 -0.7 -0.5 hypothetical protein compare
BBR_RS20415 -0.7 -6.2 G5 domain-containing protein compare
BBR_RS13980 -0.7 -3.5 HD domain-containing protein compare
BBR_RS13630 -0.7 -2.9 carbamoyl-phosphate synthase small subunit compare
BBR_RS15440 -0.7 -1.6 orotidine-5'-phosphate decarboxylase compare
BBR_RS15180 -0.7 -3.7 long-chain fatty acid--CoA ligase compare
BBR_RS11180 -0.7 -5.7 phosphatase PAP2 family protein compare
BBR_RS16960 -0.7 -1.6 transcriptional regulator MraZ compare
BBR_RS10570 -0.7 -2.1 hypothetical protein compare
BBR_RS13640 -0.6 -2.7 orotidine-5'-phosphate decarboxylase compare
BBR_RS11510 -0.6 -1.7 signal recognition particle-docking protein FtsY compare
BBR_RS16515 -0.6 -1.9 preprotein translocase subunit SecA compare
BBR_RS16245 -0.6 -0.8 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS12785 -0.6 -1.3 transcriptional regulator compare
BBR_RS13750 -0.6 -2.0 DivIVA domain-containing protein compare
BBR_RS13635 -0.6 -3.4 carbamoyl-phosphate synthase large subunit compare
BBR_RS16750 -0.6 -1.2 ParA family protein compare
BBR_RS19445 -0.6 -5.4 glutamate 5-kinase compare
BBR_RS20420 -0.6 -4.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS14780 -0.6 -2.5 XRE family transcriptional regulator compare
BBR_RS12300 -0.6 -2.6 30S ribosomal protein S16 compare
BBR_RS20720 -0.6 -2.5 DUF4422 domain-containing protein compare
BBR_RS11515 -0.6 -5.0 ammonium transporter compare
BBR_RS12940 -0.6 -3.7 hypothetical protein compare
BBR_RS15750 -0.6 -0.9 hypothetical protein compare
BBR_RS13770 -0.6 -1.2 DNA repair protein RecO compare
BBR_RS11395 -0.6 -2.1 DNA-binding protein compare
BBR_RS12355 -0.6 -1.8 ribonuclease III compare
BBR_RS10755 -0.6 -2.3 adenylosuccinate synthase compare
BBR_RS18635 -0.6 -2.7 PspC domain-containing protein compare
BBR_RS14495 -0.6 -1.4 trigger factor compare
BBR_RS19645 -0.6 -3.1 RNA degradosome polyphosphate kinase compare
BBR_RS20960 -0.6 -1.8 hypothetical protein compare
BBR_RS13450 -0.6 -1.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS15445 -0.6 -2.3 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS16965 -0.6 -0.4 ATP-dependent DNA helicase compare
BBR_RS19165 -0.6 -1.5 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS12975 -0.6 -4.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS20400 -0.6 -5.2 serine/threonine protein kinase compare
BBR_RS21170 -0.6 -3.4 membrane protein insertion efficiency factor YidD compare
BBR_RS20935 -0.6 -1.8 hypothetical protein compare
BBR_RS14475 -0.5 -3.7 formate C-acetyltransferase compare
BBR_RS14850 -0.5 -1.0 VOC family protein compare
BBR_RS15680 -0.5 -3.0 succinate--CoA ligase subunit alpha compare
BBR_RS14985 -0.5 -1.4 ATP-dependent DNA helicase PcrA compare
BBR_RS19260 -0.5 -4.6 hypothetical protein compare
BBR_RS10660 -0.5 -4.6 esterase compare
BBR_RS16820 -0.5 -1.7 RNA polymerase sigma factor RpoE compare
BBR_RS15730 -0.5 -1.4 hypothetical protein compare
BBR_RS10990 -0.5 -2.8 recombination protein RecR compare
BBR_RS12610 -0.5 -2.2 capsular polysaccharide biosynthesis protein compare
BBR_RS11240 -0.5 -1.9 GtrA family protein compare
BBR_RS20980 -0.5 -1.2 hypothetical protein compare
BBR_RS15425 -0.5 -1.2 aspartate carbamoyltransferase compare
BBR_RS16755 -0.5 -2.1 site-specific tyrosine recombinase XerD compare
BBR_RS12175 -0.5 -3.7 TetR/AcrR family transcriptional regulator compare
BBR_RS12295 -0.5 -0.8 RNA-binding protein compare
BBR_RS20685 -0.5 -2.0 hypothetical protein compare
BBR_RS11145 -0.5 -1.4 hypothetical protein compare
BBR_RS14230 -0.5 -1.8 HAMP domain-containing histidine kinase compare
BBR_RS15370 -0.5 -1.5 macro domain-containing protein compare
BBR_RS15340 -0.5 -1.4 hypothetical protein compare
BBR_RS19070 -0.5 -0.6 50S ribosomal protein L33 compare
BBR_RS12810 -0.5 -3.0 hypothetical protein compare
BBR_RS15350 -0.5 -1.4 plasmid pRiA4b ORF-3 family protein compare
BBR_RS13985 -0.5 -2.2 membrane protein compare
BBR_RS17855 -0.5 -4.1 ABC transporter ATP-binding protein compare
BBR_RS18990 -0.5 -0.8 AbrB family transcriptional regulator compare
BBR_RS14980 -0.5 -1.9 xanthine phosphoribosyltransferase compare
BBR_RS11975 -0.4 -1.9 hypothetical protein compare
BBR_RS15685 -0.4 -3.0 hypothetical protein compare
BBR_RS21095 -0.4 -2.2 chemotaxis protein compare
BBR_RS13910 -0.4 -0.6 arginine repressor compare
BBR_RS10615 -0.4 -1.6 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS16255 -0.4 -0.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS15650 -0.4 -0.6 Holliday junction resolvase compare
BBR_RS11505 -0.4 -3.9 TetR/AcrR family transcriptional regulator compare
BBR_RS10665 -0.4 -4.2 DUF2156 domain-containing protein compare
BBR_RS18220 -0.4 -3.2 glycosyltransferase family 2 protein compare
BBR_RS12380 -0.4 -1.7 DUF3039 domain-containing protein compare
BBR_RS16655 -0.4 -2.1 tyrosine recombinase XerC compare
BBR_RS19105 -0.4 -2.4 FmdB family transcriptional regulator compare
BBR_RS11470 -0.4 -0.7 6-phosphogluconolactonase compare
BBR_RS15675 -0.4 -2.2 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS13375 -0.4 -2.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS14205 -0.4 -0.8 hypothetical protein compare
BBR_RS19095 -0.4 -3.4 magnesium transporter compare
BBR_RS16025 -0.4 -2.3 hypothetical protein compare
BBR_RS14290 -0.4 -1.8 TerC family protein compare
BBR_RS14130 -0.4 -0.5 septum formation initiator family protein compare
BBR_RS19915 -0.4 -3.0 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Puromycin dihydrochloride across organisms