Experiment set3IT001 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sodium nitrite 10 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2005 -3.5 -2.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_769 -3.4 -5.1 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1116 -3.2 -10.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_1115 -3.2 -9.9 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_970 -3.1 -12.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_262 -3.0 -17.4 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_969 -3.0 -23.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_971 -2.9 -14.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_973 -2.9 -18.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_3447 -2.9 -5.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_972 -2.8 -18.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_2939 -2.7 -5.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_3328 -2.6 -2.8 Rhodanese-like domain protein compare
Pf1N1B4_1403 -2.4 -7.4 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4040 -2.4 -3.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_275 -2.4 -2.8 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2893 -2.4 -7.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_1307 -2.4 -2.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1472 -2.3 -2.0 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_4030 -2.3 -2.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1408 -2.1 -4.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_5663 -2.1 -3.0 Periplasmic sugar-binding domain protein compare
Pf1N1B4_4035 -2.1 -2.7 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_683 -2.0 -3.5 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_5289 -2.0 -2.9 hypothetical protein compare
Pf1N1B4_2352 -2.0 -6.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_327 -2.0 -2.6 hypothetical protein compare
Pf1N1B4_2917 -1.9 -7.9 FIG140336: TPR domain protein compare
Pf1N1B4_3168 -1.9 -3.3 AmpG permease compare
Pf1N1B4_3849 -1.9 -4.2 Transcriptional regulator, GntR family compare
Pf1N1B4_2807 -1.9 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_2612 -1.9 -3.8 Putative transport protein compare
Pf1N1B4_932 -1.9 -1.7 FIG00963370: hypothetical protein compare
Pf1N1B4_1475 -1.9 -6.0 FIG00962376: hypothetical protein compare
Pf1N1B4_4028 -1.9 -3.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_5659 -1.9 -9.5 NfuA Fe-S protein maturation compare
Pf1N1B4_1234 -1.9 -4.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4039 -1.8 -5.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1845 -1.8 -2.5 FIG00954395: hypothetical protein compare
Pf1N1B4_4038 -1.8 -2.3 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_695 -1.8 -2.8 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_1617 -1.8 -7.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2886 -1.8 -10.3 Paraquat-inducible protein B compare
Pf1N1B4_652 -1.7 -8.3 Sensory box histidine kinase compare
Pf1N1B4_3445 -1.7 -3.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_3990 -1.7 -3.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_5224 -1.7 -3.2 tRNA-Arg-CCT compare
Pf1N1B4_756 -1.7 -2.4 hypothetical protein compare
Pf1N1B4_1150 -1.7 -3.8 AmpE protein compare
Pf1N1B4_1153 -1.7 -3.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2114 -1.6 -5.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2891 -1.6 -3.6 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_4857 -1.6 -4.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3595 -1.6 -2.1 Flagellin protein FlaG compare
Pf1N1B4_4957 -1.6 -2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_3006 -1.6 -4.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_980 -1.6 -2.2 hypothetical protein compare
Pf1N1B4_1838 -1.6 -3.6 FIG00955509: hypothetical protein compare
Pf1N1B4_1614 -1.6 -2.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_1619 -1.6 -8.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_4041 -1.6 -2.8 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_3248 -1.6 -3.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf1N1B4_373 -1.6 -3.0 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_5720 -1.6 -1.9 hypothetical protein compare
Pf1N1B4_1294 -1.5 -2.2 VgrG protein compare
Pf1N1B4_2733 -1.5 -2.2 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_4029 -1.5 -2.8 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_81 -1.5 -2.6 Putative sulfate permease compare
Pf1N1B4_1566 -1.5 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1624 -1.5 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2384 -1.5 -8.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2417 -1.5 -2.6 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_1626 -1.5 -6.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2969 -1.5 -9.2 ATPase, AFG1 family compare
Pf1N1B4_483 -1.5 -2.1 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_6041 -1.4 -2.0 Carbon storage regulator compare
Pf1N1B4_888 -1.4 -4.0 Transglycosylase, Slt family compare
Pf1N1B4_1906 -1.4 -3.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2850 -1.4 -5.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1057 -1.4 -1.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2724 -1.4 -5.3 Transcriptional regulator, AsnC family compare
Pf1N1B4_58 -1.4 -5.2 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_5797 -1.4 -2.5 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_4100 -1.4 -2.5 probable transmembrane protein compare
Pf1N1B4_364 -1.4 -3.5 Rhodanese domain protein UPF0176 compare
Pf1N1B4_1568 -1.4 -2.5 Twin-arginine translocation protein TatB compare
Pf1N1B4_578 -1.3 -2.3 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_4833 -1.3 -2.4 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1002 -1.3 -6.0 LysR family transcriptional regulator QseA compare
Pf1N1B4_3800 -1.3 -2.4 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_4831 -1.3 -1.9 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_1462 -1.3 -8.5 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_5939 -1.3 -2.9 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_345 -1.3 -1.5 Integration host factor beta subunit compare
Pf1N1B4_4107 -1.3 -1.8 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_2853 -1.3 -1.8 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_960 -1.3 -6.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_1569 -1.3 -8.1 Twin-arginine translocation protein TatC compare
Pf1N1B4_2975 -1.3 -1.7 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_4592 -1.3 -1.9 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_3833 -1.2 -6.1 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4055 -1.2 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_1035 -1.2 -3.3 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) compare
Pf1N1B4_3468 -1.2 -1.9 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_197 -1.2 -2.1 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_2071 -1.2 -1.7 Protein phosphatase ImpM compare
Pf1N1B4_2739 -1.2 -1.8 acetyltransferase, GNAT family compare
Pf1N1B4_3508 -1.2 -2.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_1724 -1.2 -3.1 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_407 -1.2 -1.8 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_4839 -1.2 -1.8 lipoprotein compare
Pf1N1B4_5780 -1.2 -3.4 Nitrous oxide reductase maturation protein NosD compare
Pf1N1B4_1590 -1.2 -3.9 Histidine utilization repressor compare
Pf1N1B4_5745 -1.2 -1.6 FIG139928: Putative protease compare
Pf1N1B4_5690 -1.2 -2.9 Putative TEGT family carrier/transport protein compare
Pf1N1B4_3911 -1.2 -3.0 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_399 -1.1 -1.9 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_1749 -1.1 -1.4 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_3143 -1.1 -2.3 RecA protein compare
Pf1N1B4_4089 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_1159 -1.1 -2.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_3368 -1.1 -1.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_4462 -1.1 -2.1 LysR family transcriptional regulator YbhD compare
Pf1N1B4_133 -1.1 -2.0 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_5279 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_2004 -1.1 -1.9 putative membrane protein compare
Pf1N1B4_2339 -1.1 -1.6 COG1872 compare
Pf1N1B4_1105 -1.1 -2.1 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_4156 -1.1 -1.8 putative secreted protein compare
Pf1N1B4_1613 -1.1 -1.6 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_337 -1.1 -3.2 O-antigen export system permease protein RfbD compare
Pf1N1B4_2144 -1.1 -5.4 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_875 -1.1 -2.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1469 -1.1 -8.4 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_1095 -1.1 -6.8 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf1N1B4_4657 -1.1 -2.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2568 -1.1 -2.2 Translation elongation factor Tu compare
Pf1N1B4_2884 -1.1 -3.9 Paraquat-inducible protein A compare
Pf1N1B4_962 -1.1 -5.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_2106 -1.1 -2.3 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_118 -1.1 -2.1 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_348 -1.1 -2.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4667 -1.0 -1.6 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_5383 -1.0 -5.8 hypothetical protein compare
Pf1N1B4_4172 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_1067 -1.0 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4256 -1.0 -1.8 Probable transmembrane protein compare
Pf1N1B4_4540 -1.0 -1.9 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_4612 -1.0 -1.5 FIG00954117: hypothetical protein compare
Pf1N1B4_1615 -1.0 -3.1 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_2874 -1.0 -1.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_3874 -1.0 -2.8 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_5661 -1.0 -4.5 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_1878 -1.0 -6.0 Cytochrome c4 compare
Pf1N1B4_1612 -1.0 -1.4 FIG00955429: hypothetical protein compare
Pf1N1B4_1782 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_3152 -1.0 -3.7 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_4009 -1.0 -2.7 Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3) compare
Pf1N1B4_3119 -1.0 -1.6 Holin compare
Pf1N1B4_2642 -1.0 -2.0 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_2873 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_974 -1.0 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_906 -1.0 -2.4 Glutaredoxin NrdH compare
Pf1N1B4_3322 -1.0 -5.4 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_3081 -1.0 -8.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1872 -1.0 -4.9 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_1069 -1.0 -3.6 YrbA protein compare
Pf1N1B4_3818 -1.0 -1.6 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_1565 -1.0 -2.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_4285 -1.0 -1.9 Inositol transport system sugar-binding protein compare
Pf1N1B4_4516 -1.0 -1.9 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_3507 -1.0 -6.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf1N1B4_3356 -1.0 -1.7 Cyclic nucleotide-binding protein compare
Pf1N1B4_63 -0.9 -1.7 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_2526 -0.9 -7.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_6045 -0.9 -1.7 CigR (Putative inner membrane protein) compare
Pf1N1B4_3766 -0.9 -3.9 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_384 -0.9 -1.1 proteinase inhibitor compare
Pf1N1B4_5624 -0.9 -1.8 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_2335 -0.9 -2.5 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_4895 -0.9 -2.8 Putrescine ABC transporter, periplasmic putrescine-binding protein compare
Pf1N1B4_4644 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_5022 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_1871 -0.9 -3.9 Zinc uptake regulation protein ZUR compare
Pf1N1B4_2227 -0.9 -1.9 FIG019278: hypothetical protein compare
Pf1N1B4_4731 -0.9 -2.2 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_163 -0.9 -2.4 ADP-ribosylglycohydrolase compare
Pf1N1B4_2026 -0.9 -2.3 Transcriptional regulator compare
Pf1N1B4_336 -0.9 -6.5 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_1317 -0.9 -1.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_4119 -0.9 -1.8 dioxygenase compare
Pf1N1B4_3767 -0.9 -2.4 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf1N1B4_1024 -0.9 -3.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_2173 -0.9 -1.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_4728 -0.9 -2.8 Na+/H+ antiporter NhaB compare
Pf1N1B4_5916 -0.9 -1.9 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_1508 -0.9 -1.8 Lysophospholipid acyltransferase compare
Pf1N1B4_5640 -0.9 -2.2 Transcriptional regulator, IclR family compare
Pf1N1B4_3871 -0.9 -6.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_4640 -0.9 -2.4 MoxR-like ATPase in aerotolerance operon compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For stress Sodium nitrite across organisms