Experiment set3IT001 for Caulobacter crescentus NA1000

Compare to:

PYE with Chloramphenicol 0.0001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01059 +2.9 26.0 S-layer protein rsaA compare
CCNA_01712 +2.8 24.8 CopY/TcrY family transcriptional repressor compare
CCNA_00699 +2.4 13.6 LSU ribosomal protein L28P compare
CCNA_02941 +2.4 9.6 transcription elongation factor greA compare
CCNA_02026 +2.4 14.8 hypothetical protein compare
CCNA_03064 +2.4 15.2 PadR-family transcriptional regulator compare
CCNA_02957 +2.3 10.0 ArsR-family transcriptional regulator compare
CCNA_01058 +2.3 16.4 helix-turn-helix transcriptional regulator compare
CCNA_01526 +2.2 8.7 flagellar biosynthesis regulatory protein flaF compare
CCNA_03043 +2.2 7.6 type IV pilin protein pilA compare
CCNA_01060 +2.2 13.1 type I protein secretion ATP-binding protein RsaD compare
CCNA_01979 +2.2 10.2 LexA repressor compare
CCNA_01242 +2.2 15.7 amino acid permease compare
CCNA_03252 +2.2 20.8 CopY/TcrY-family transcriptional regulator compare
CCNA_02980 +2.2 14.6 tryptophan 2,3-dioxygenase compare
CCNA_00518 +2.2 15.1 LSU ribosomal protein L25P compare
CCNA_01061 +2.2 9.0 type I secretion adaptor protein RsaE compare
CCNA_03287 +2.1 15.3 PadR-family transcriptional regulator compare
CCNA_02836 +2.1 10.2 hypothetical protein compare
CCNA_00962 +2.1 11.5 MarR-family transcriptional regulator compare
CCNA_03519 +2.1 14.4 PadR-family transcriptional regulator compare
CCNA_02387 +2.1 17.3 glutathione reductase compare
CCNA_02030 +2.1 9.7 hypothetical protein compare
CCNA_02646 +2.0 5.4 cell division protein MraZ compare
CCNA_00161 +2.0 15.0 hypothetical protein compare
CCNA_02103 +2.0 11.0 hypothetical protein compare
CCNA_00162 +2.0 13.2 hypothetical protein compare
CCNA_R0037 +2.0 8.9 tRNA-Glu compare
CCNA_01525 +2.0 10.9 flagellar biosynthesis repressor flbT compare
CCNA_01790 +2.0 8.0 protein translocase subunit secG compare
CCNA_01814 +2.0 14.8 nitrogen regulation protein ntrB compare
CCNA_01840 +2.0 15.9 MerR-family transcriptional regulator compare
CCNA_02591 +2.0 9.3 glutaredoxin compare
CCNA_03281 +2.0 15.1 AsnC-family transcriptional regulator compare
CCNA_03961 +2.0 7.0 hypothetical protein compare
CCNA_03012 +2.0 11.9 peroxiredoxin compare
CCNA_01851 +2.0 16.1 quinol cytochrome oxidase polypeptide II compare
CCNA_01094 +1.9 4.7 hypothetical protein compare
CCNA_01801 +1.9 8.8 hypothetical protein compare
CCNA_02225 +1.9 10.2 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_03936 +1.9 9.2 hypothetical protein compare
CCNA_01573 +1.9 10.5 ArsR-family transcriptional regulator compare
CCNA_02021 +1.9 6.7 hypothetical protein compare
CCNA_01942 +1.9 11.2 Rrf2 family protein compare
CCNA_02000 +1.9 4.8 SSU ribosomal protein S2P compare
CCNA_00939 +1.9 7.3 MarR-family transcriptional regulator compare
CCNA_00954 +1.9 13.4 AAA-family response regulator flbD compare
CCNA_03289 +1.9 14.7 HicB-family RNA-binding protein compare
CCNA_01361 +1.9 4.7 PepSY superfamily protein compare
CCNA_00505 +1.9 8.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02732 +1.9 4.2 hypothetical protein compare
CCNA_02315 +1.9 7.8 Cro/CI-family transcriptional regulator compare
CCNA_02328 +1.9 1.6 cell cycle regulatory protein GcrA compare
CCNA_01968 +1.9 9.0 pentapeptide repeats containing protein compare
CCNA_02289 +1.9 14.2 MarR/EmrR family transcriptional regulator compare
CCNA_00521 +1.9 4.3 antitoxin protein compare
CCNA_02316 +1.8 10.1 hypothetical protein compare
CCNA_01420 +1.8 8.1 NrdR family transcriptional regulator compare
CCNA_02025 +1.8 5.3 hypothetical protein compare
CCNA_02133 +1.8 10.0 glucokinase compare
CCNA_02910 +1.8 14.6 TonB-dependent receptor compare
CCNA_02448 +1.8 10.7 hypothetical protein compare
CCNA_02042 +1.8 11.3 trigger factor chaperone compare
CCNA_01848 +1.8 13.7 quinol cytochrome oxidase polypeptide IV compare
CCNA_03280 +1.8 15.6 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_00846 +1.8 15.5 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_03123 +1.8 11.4 ArsR-family transcriptional regulator compare
CCNA_01913 +1.8 11.1 MarR-family transcriptional regulator compare
CCNA_01186 +1.8 7.4 hypothetical protein compare
CCNA_01739 +1.7 10.6 LSU ribosomal protein L9P compare
CCNA_03858 +1.7 14.0 protein translocase subunit secB compare
CCNA_02242 +1.7 11.4 PHB granule-associated protein, phasin2 compare
CCNA_00769 +1.7 9.7 TetR family transcriptional regulator compare
CCNA_01931 +1.7 11.0 TetR-family transcriptional regulator compare
CCNA_03271 +1.7 12.2 methionine gamma-lyase compare
CCNA_02447 +1.7 10.8 PspA/IM30 family regulatory protein compare
CCNA_00684 +1.7 9.5 anti-sigma factor, ChrR-family compare
CCNA_01453 +1.7 6.5 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_03479 +1.7 9.6 MarR-family transcriptional regulator compare
CCNA_03805 +1.7 12.6 PadR-family transcriptional regulator compare
CCNA_01815 +1.7 12.1 nitrogen assimilation regulatory protein NtrC compare
CCNA_00027 +1.7 3.8 2OG-Fe(II) oxygenase compare
CCNA_00924 +1.7 8.9 MarR/EmrR family transcriptional regulator compare
CCNA_03325 +1.7 7.0 hypothetical protein compare
CCNA_02644 +1.7 5.4 cell division protein FtsL compare
CCNA_00756 +1.7 4.1 hypothetical protein compare
CCNA_01684 +1.7 9.2 phenylalanine-4-hydroxylase compare
CCNA_02004 +1.7 4.3 SOS-induced inhibitor of cell division SidA compare
CCNA_03951 +1.6 6.6 hypothetical protein compare
CCNA_00919 +1.6 8.6 hypothetical protein compare
CCNA_01751 +1.6 6.0 aminodeoxychorismate lyase compare
CCNA_03989 +1.6 12.5 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01655 +1.6 8.9 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03129 +1.6 11.2 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01850 +1.6 12.9 quinol cytochrome oxidase polypeptide I compare
CCNA_03379 +1.6 4.1 Cro/CI family transcriptional regulator compare
CCNA_02339 +1.6 10.2 methyltransferase compare
CCNA_03498 +1.6 13.1 MarR-family transcriptional regulator compare
CCNA_00527 +1.6 9.4 hypothetical protein compare
CCNA_02075 +1.6 2.9 peptidoglycan binding endopeptidase DipM compare
CCNA_01722 +1.6 3.7 hypothetical protein compare
CCNA_03401 +1.6 7.0 conserved hypothetical cytosolic protein compare
CCNA_00920 +1.6 6.9 hypothetical protein compare
CCNA_00950 +1.6 11.4 flagellar M-ring protein FliF compare
CCNA_00944 +1.6 8.8 flagellar hook length determination protein compare
CCNA_03030 +1.6 8.5 cytochrome c2 compare
CCNA_00999 +1.6 6.6 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_02575 +1.6 4.2 hypothetical protein compare
CCNA_01964 +1.5 4.3 NADH dehydrogenase compare
CCNA_02037 +1.5 9.5 ATP-dependent endopeptidase Lon compare
CCNA_03062 +1.5 10.0 cell wall hydrolase family protein compare
CCNA_02617 +1.5 11.7 histidinol-phosphate aminotransferase compare
CCNA_03689 +1.5 11.3 alanine dehydrogenase compare
CCNA_00947 +1.5 11.9 flagellar hook protein FlgE compare
CCNA_00945 +1.5 9.3 chemotaxis protein MotD compare
CCNA_01849 +1.5 9.0 quinol cytochrome oxidase polypeptide III compare
CCNA_03643 +1.5 2.4 succinate dehydrogenase membrane anchor subunit compare
CCNA_02416 +1.5 9.3 DNA-binding protein HU compare
CCNA_01679 +1.5 7.9 succinylglutamic semialdehyde dehydrogenase compare
CCNA_02619 +1.5 11.3 stomatin/prohibitin-related protein compare
CCNA_02576 +1.5 11.0 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_00953 +1.5 6.3 flagellar motor switch protein FliN compare
CCNA_02081 +1.5 6.1 Sec-independent protein translocase protein tatB compare
CCNA_03612 +1.5 9.5 HTH XRE-family transcriptional regulator compare
CCNA_01578 +1.5 9.8 beta-lactamase repressor compare
CCNA_00447 +1.5 8.4 chemotaxis protein cheD compare
CCNA_02616 +1.5 10.3 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01235 +1.5 9.1 AcrR-family transcriptional regulator compare
CCNA_01619 +1.5 8.7 NYN domain protein compare
CCNA_01295 +1.5 10.4 integral membrane protein compare
CCNA_03518 +1.5 11.3 cytochrome c oxidase polypeptide II coxB compare
CCNA_01181 +1.5 8.7 hypothetical protein compare
CCNA_01541 +1.5 9.8 LysR-family transcriptional regulator compare
CCNA_01804 +1.5 9.2 glutathione peroxidase compare
CCNA_00163 +1.5 9.3 exopolysaccharide transport family protein compare
CCNA_03420 +1.5 8.2 hypothetical protein compare
CCNA_00895 +1.5 7.0 hypothetical protein compare
CCNA_00562 +1.5 10.1 dihydroorotate dehydrogenase compare
CCNA_01742 +1.4 5.7 hypothetical protein compare
CCNA_00459 +1.4 9.9 Na+/H+ antiporter nhaA compare
CCNA_03964 +1.4 2.9 hypothetical protein compare
CCNA_R0048 +1.4 1.8 tRNA-Leu compare
CCNA_02835 +1.4 5.2 CpxP-related protein compare
CCNA_00147 +1.4 2.8 hypothetical protein compare
CCNA_03513 +1.4 9.1 cytochrome c oxidase subunit III coxC compare
CCNA_02805 +1.4 5.2 hypothetical protein compare
CCNA_01678 +1.4 8.3 arginine N-succinyltransferase, beta chain compare
CCNA_00032 +1.4 4.6 antitoxin protein VapB compare
CCNA_00803 +1.4 5.7 chemotaxis protein cheW compare
CCNA_01730 +1.4 8.2 amidophosphoribosyltransferase compare
CCNA_00726 +1.4 10.3 acyl-CoA dehydrogenase compare
CCNA_01690 +1.4 3.7 MAPEG family membrane protein compare
CCNA_00354 +1.4 8.3 NlpC/P60 CHAP domain amidase protein compare
CCNA_01763 +1.4 9.0 multifunctional aminopeptidase compare
CCNA_00497 +1.4 8.5 putative rhamnosyl transferase compare
CCNA_03089 +1.4 8.0 hypothetical protein compare
CCNA_01802 +1.4 3.1 hypothetical protein compare
CCNA_00392 +1.4 10.2 dihydroorotase compare
CCNA_01731 +1.4 6.6 colicin V production protein CvpA compare
CCNA_01063 +1.4 7.4 UDP-perosamine 4-acetyl transferase compare
CCNA_01780 +1.4 10.0 exopolyphosphatase compare
CCNA_01528 +1.4 8.1 flagellin fljK compare
CCNA_03702 +1.4 2.6 SSU ribosomal protein S1P compare
CCNA_02419 +1.4 5.4 TonB1 protein compare
CCNA_01433 +1.4 3.9 integration host factor alpha-subunit compare
CCNA_02127 +1.4 9.1 oxacillin resistance-associated protein fmtC compare
CCNA_03372 +1.4 4.0 bacterioferritin-associated ferredoxin compare
CCNA_00834 +1.3 6.2 flagellin FljM compare
CCNA_00441 +1.3 7.4 chemotaxis receiver domain protein cheYI compare
CCNA_01324 +1.3 4.8 LSU ribosomal protein L30P compare
CCNA_00946 +1.3 7.1 Basal-body rod modification protein FlgD compare
CCNA_00114 +1.3 7.2 MarR/EmrR-family transcriptional regulator compare
CCNA_00951 +1.3 9.0 flagellar motor switch protein FliG compare
CCNA_01926 +1.3 7.0 GGDEF diguanylate cyclase DgcB compare
CCNA_01608 +1.3 5.9 TetR-family transcriptional regulator compare
CCNA_02846 +1.3 9.5 DegP/HtrA-family serine protease compare
CCNA_00168 +1.3 9.5 polysaccharide export protein compare
CCNA_00375 +1.3 5.0 hypothetical protein compare
CCNA_03215 +1.3 8.8 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01774 +1.3 2.2 phosphoribosylglycinamide formyltransferase compare
CCNA_03762 +1.3 5.9 acetolactate synthase-related protein compare
CCNA_00781 +1.3 10.0 two-component receiver protein CpdR compare
CCNA_01393 +1.3 9.6 soluble lytic murein transglycosylase compare
CCNA_R0054 +1.3 3.2 tRNA-Gly compare
CCNA_01677 +1.3 6.8 carboxypeptidase G2 precursor compare
CCNA_02367 +1.3 9.5 CelR-family transcriptional regulator compare
CCNA_02063 +1.3 5.6 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_02942 +1.3 4.3 nucleoside-diphosphate-sugar epimerase compare
CCNA_01813 +1.3 7.7 tRNA-dihydrouridine synthase compare
CCNA_02180 +1.3 3.0 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_02341 +1.3 6.9 small heat shock protein compare
CCNA_01193 +1.3 9.8 amylosucrase compare
CCNA_03515 +1.3 4.8 hypothetical protein compare
CCNA_02073 +1.3 4.3 cupin domain transcriptional regulator compare
CCNA_02475 +1.3 9.2 transcriptional regulator vanR compare
CCNA_03893 +1.2 4.0 hypothetical protein compare
CCNA_03464 +1.2 3.9 glycine cleavage system H protein compare
CCNA_02067 +1.2 6.4 conserved membrane spanning protein compare
CCNA_01775 +1.2 5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_02324 +1.2 7.2 heat shock protein 33 hsp33 compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Chloramphenicol across organisms