Experiment set3H48 for Dechlorosoma suillum PS

Compare to:

Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

200 most important genes:

  gene name fitness t score description  
Dsui_2127 -1.3 -1.0 flavodoxin reductase family protein compare
Dsui_1992 -1.3 -1.4 ribosomal protein L9 compare
Dsui_0469 -1.3 -1.2 lipopolysaccharide heptosyltransferase III, putative compare
Dsui_1445 -1.3 -0.9 succinyl-CoA synthetase, beta subunit compare
Dsui_0255 -1.2 -1.8 hypothetical protein compare
Dsui_3081 -1.0 -0.5 chaperone protein DnaK compare
Dsui_2578 -1.0 -1.4 hypothetical protein compare
Dsui_1576 -0.9 -0.5 dihydrolipoamide dehydrogenase compare
Dsui_3375 -0.9 -1.2 hypothetical protein compare
Dsui_1096 -0.9 -3.1 glutamate synthase family protein compare
Dsui_2591 -0.9 -2.7 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_1897 -0.9 -1.7 hypothetical protein compare
Dsui_3080 -0.9 -0.3 molecular chaperone GrpE (heat shock protein) compare
Dsui_2673 -0.8 -1.3 hypothetical protein compare
Dsui_1275 -0.8 -1.3 protein-export chaperone SecB compare
Dsui_0003 -0.8 -1.2 putative Zn-dependent protease compare
Dsui_3495 -0.8 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Dsui_2606 -0.8 -1.5 soluble lytic murein transglycosylase-like protein compare
Dsui_0267 -0.8 -1.1 multidrug resistance efflux pump compare
Dsui_1577 -0.8 -0.4 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
Dsui_3247 -0.8 -1.4 Protein of unknown function (DUF2788) compare
Dsui_0540 -0.8 -2.3 L-threonine-O-3-phosphate decarboxylase compare
Dsui_1398 -0.7 -0.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Dsui_0573 -0.7 -1.1 ferredoxin-like protein compare
Dsui_1403 -0.7 -0.4 putative NTP binding protein (contains STAS domain) compare
Dsui_1094 -0.7 -1.0 shikimate kinase compare
Dsui_1251 -0.7 -1.9 acylphosphatase compare
Dsui_1713 -0.7 -2.7 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Dsui_0417 -0.6 -2.0 gamma-glutamyltransferase compare
Dsui_2158 -0.6 -1.0 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Dsui_1970 -0.6 -1.0 metalloendopeptidase-like membrane protein compare
Dsui_1652 -0.6 -0.9 FeoA-like protein compare
Dsui_2339 -0.6 -2.0 putative domain HDIG-containing protein compare
Dsui_2609 -0.6 -1.3 hypothetical protein compare
Dsui_1662 -0.6 -2.4 Oxidoreductase NAD-binding domain/Flavodoxin compare
Dsui_1316 -0.6 -1.7 hypothetical protein compare
Dsui_1170 -0.6 -0.6 heme exporter protein CcmD compare
Dsui_1682 -0.6 -1.2 biopolymer transport protein compare
Dsui_1649 -0.6 -0.8 universal stress protein UspA-like protein compare
Dsui_3484 -0.6 -0.5 putative permease compare
Dsui_3102 -0.6 -1.7 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Dsui_2676 -0.6 -1.3 putative membrane protein compare
Dsui_1820 -0.6 -2.3 ABC-type branched-chain amino acid transport system, periplasmic component compare
Dsui_1037 -0.6 -0.6 ribosomal protein L25, Ctc-form compare
Dsui_2315 -0.5 -1.2 Stress responsive A/B Barrel Domain-containing protein compare
Dsui_0460 -0.5 -1.4 ADP-heptose:LPS heptosyltransferase compare
Dsui_0116 -0.5 -2.2 alkylhydroperoxidase AhpD family core domain protein compare
Dsui_1675 -0.5 -1.7 hypothetical protein compare
Dsui_0967 -0.5 -1.3 hypothetical protein compare
Dsui_2276 -0.5 -1.6 Protein of unknown function (DUF2975) compare
Dsui_2773 -0.5 -2.2 putative enzyme involved in biosynthesis of extracellular polysaccharides compare
Dsui_2948 -0.5 -2.2 RNA polymerase sigma factor, sigma-70 family compare
Dsui_2138 -0.5 -1.0 putative esterase compare
Dsui_3352 -0.5 -1.8 cAMP-binding protein compare
Dsui_2145 -0.5 -0.9 FtsH-interacting integral membrane protein compare
Dsui_1002 -0.5 -1.4 prolyl oligopeptidase family protein compare
Dsui_2927 -0.5 -0.8 cell wall-associated hydrolase, invasion-associated protein compare
Dsui_0885 -0.5 -1.1 hypothetical protein compare
Dsui_0650 -0.5 -1.3 hypothetical protein compare
Dsui_1055 -0.5 -2.2 sporulation related protein compare
Dsui_1242 -0.5 -3.3 hypothetical protein compare
Dsui_3220 -0.5 -0.6 PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase compare
Dsui_2161 -0.5 -2.2 ATP-dependent chaperone ClpB compare
Dsui_2187 -0.5 -1.8 acyl-CoA synthetase/AMP-acid ligase compare
Dsui_2736 -0.5 -1.1 glycine cleavage system H protein compare
Dsui_2640 -0.5 -0.8 Cytochrome c compare
Dsui_3290 -0.5 -1.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Dsui_1297 -0.5 -2.5 biotin synthetase compare
Dsui_2775 -0.5 -1.6 hypothetical protein compare
Dsui_0947 -0.5 -2.4 hypothetical protein compare
Dsui_1221 -0.5 -1.2 hypothetical protein compare
Dsui_0395 -0.5 -1.2 outer membrane lipoprotein compare
Dsui_1005 -0.5 -1.2 tRNA-Gly compare
Dsui_0532 -0.5 -1.5 cob(I)alamin adenosyltransferase compare
Dsui_2330 -0.4 -1.7 3-hydroxyacyl-CoA dehydrogenase compare
Dsui_0215 -0.4 -0.9 hypothetical protein compare
Dsui_2172 -0.4 -1.0 transcriptional regulator compare
Dsui_1378 -0.4 -2.4 enoyl-CoA hydratase/carnithine racemase compare
Dsui_1000 -0.4 -2.1 hypothetical protein compare
Dsui_2242 -0.4 -2.1 hypothetical protein compare
Dsui_1887 -0.4 -2.5 PAS domain S-box compare
Dsui_2095 -0.4 -1.0 methylase involved in ubiquinone/menaquinone biosynthesis compare
Dsui_0122 -0.4 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
Dsui_2744 -0.4 -1.8 Protein of unknown function (DUF1236) compare
Dsui_2902 -0.4 -0.5 hypothetical protein compare
Dsui_2329 -0.4 -2.0 putative dehydrogenase compare
Dsui_2044 -0.4 -1.4 Rhodanese-related sulfurtransferase compare
Dsui_0196 -0.4 -2.7 hypothetical protein compare
Dsui_3377 -0.4 -1.7 Uncharacterized protein conserved in bacteria (DUF2325) compare
Dsui_3457 -0.4 -0.3 K+ transporter compare
Dsui_2331 -0.4 -1.5 heat shock protein compare
Dsui_0744 -0.4 -1.5 phosphotransferase system, mannose/fructose-specific component IIA compare
Dsui_3404 -0.4 -1.0 glutamine synthetase adenylyltransferase compare
Dsui_0025 -0.4 -1.8 hypothetical protein compare
Dsui_2702 -0.4 -1.6 cell division protein compare
Dsui_3439 -0.4 -2.0 methyl-accepting chemotaxis protein compare
Dsui_0675 -0.4 -0.8 putative dithiol-disulfide isomerase involved in polyketide biosynthesis compare
Dsui_2383 -0.4 -1.7 hypothetical protein compare
Dsui_1301 -0.4 -2.1 putative transmembrane transcriptional regulator (anti-sigma factor) compare
Dsui_0258 -0.4 -0.9 sulfate ABC transporter, ATP-binding protein compare
Dsui_1451 -0.4 -1.8 FHA domain-containing protein compare
Dsui_1759 -0.4 -1.5 flagellar hook-basal body complex protein FliE compare
Dsui_0973 -0.4 -1.5 putative transcriptional regulator compare
Dsui_3020 -0.4 -1.7 Protein of unknown function (DUF3124) compare
Dsui_1955 -0.4 -0.5 3'-5' exonuclease compare
Dsui_0209 -0.4 -1.4 hypothetical protein compare
Dsui_0248 -0.4 -1.7 Protein of unknown function (DUF3025) compare
Dsui_0685 -0.4 -1.2 glutathione S-transferase compare
Dsui_2888 -0.4 -1.3 stress-induced morphogen compare
Dsui_2137 -0.4 -0.8 queuosine biosynthesis protein QueD compare
Dsui_2804 -0.4 -2.0 diguanylate cyclase (GGDEF) domain-containing protein compare
Dsui_3139 -0.4 -0.5 outer membrane assembly lipoprotein YfgL compare
Dsui_2248 -0.4 -0.9 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain compare
Dsui_2268 -0.4 -1.4 putative lactoylglutathione lyase compare
Dsui_0412 -0.4 -1.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component compare
Dsui_0442 -0.4 -1.3 monofunctional biosynthetic peptidoglycan transglycosylase compare
Dsui_2881 -0.4 -1.7 8-amino-7-oxononanoate synthase compare
Dsui_0530 -0.4 -1.4 ABC-type Fe3+-siderophore transport system, permease component compare
Dsui_2720 -0.4 -1.3 tRNA pseudouridine 55 synthase compare
Dsui_0539 -0.4 -2.2 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Dsui_2638 -0.4 -1.3 hypothetical protein compare
Dsui_0172 -0.4 -1.6 hypothetical protein compare
Dsui_2086 -0.4 -1.5 cytochrome c compare
Dsui_3109 -0.4 -1.9 cytochrome c, mono- and diheme variants family compare
Dsui_1482 -0.4 -0.6 hypothetical protein compare
Dsui_2809 -0.4 -0.7 ABC-type uncharacterized transport system, auxiliary component compare
Dsui_2380 -0.4 -1.1 isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase compare
Dsui_0305 -0.4 -2.6 transcriptional regulator compare
Dsui_0020 -0.4 -2.1 HAD-superfamily subfamily IIA hydrolase, TIGR01458 compare
Dsui_1891 -0.4 -1.4 enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase compare
Dsui_0042 -0.4 -0.7 Protein of unknown function (DUF2892) compare
Dsui_2397 -0.4 -1.7 cAMP-binding protein compare
Dsui_0006 -0.4 -1.4 sulfur oxidation protein SoxZ compare
Dsui_2224 -0.4 -1.0 hypothetical protein compare
Dsui_1978 -0.4 -0.2 putative lipoprotein compare
Dsui_2705 -0.3 -1.3 permease compare
Dsui_1375 -0.3 -1.9 putative nuleotide-utilizing enzyme, moeA compare
Dsui_1459 -0.3 -1.6 hypothetical protein compare
Dsui_3431 -0.3 -1.4 Protein of unknown function (DUF3240) compare
Dsui_1393 -0.3 -1.3 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_3115 -0.3 -1.0 hypothetical protein compare
Dsui_0984 -0.3 -1.6 isopropylmalate/homocitrate/citramalate synthase compare
Dsui_1581 -0.3 -0.4 response regulator compare
Dsui_3332 -0.3 -1.5 glutathione S-transferase compare
Dsui_2007 -0.3 -1.2 putative solute:sodium symporter small subunit compare
Dsui_0606 -0.3 -2.2 putative N6-adenine-specific DNA methylase compare
Dsui_1841 -0.3 -1.1 hypothetical protein compare
Dsui_2500 -0.3 -1.1 site-specific recombinase, DNA invertase Pin compare
Dsui_0942 -0.3 -0.8 hypothetical protein compare
Dsui_1669 -0.3 -1.6 trypsin-like serine protease with C-terminal PDZ domain compare
Dsui_2920 -0.3 -1.6 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_0870 -0.3 -1.8 putative membrane protein compare
Dsui_2531 -0.3 -2.0 uncharacterized protein, YfiH family compare
Dsui_1279 -0.3 -2.3 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Dsui_1636 -0.3 -1.8 poly(3-hydroxyalkanoate) synthetase compare
Dsui_2081 -0.3 -1.9 transcriptional regulator with HTH domain and aminotransferase domain compare
Dsui_0537 -0.3 -1.0 conserved protein of DIM6/NTAB family compare
Dsui_0559 -0.3 -1.7 alkylphosphonate utilization operon protein PhnA compare
Dsui_3168 -0.3 -1.2 hypothetical protein compare
Dsui_2336 -0.3 -1.6 hypothetical protein compare
Dsui_0742 -0.3 -2.0 phosphoenolpyruvate-protein phosphotransferase compare
Dsui_1886 -0.3 -2.0 response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Dsui_0035 -0.3 -1.7 ankyrin repeat-containing protein compare
Dsui_2256 -0.3 -0.9 flavodoxin reductase family protein compare
Dsui_2758 -0.3 -1.7 putative SAM-dependent methyltransferase compare
Dsui_3148 -0.3 -1.8 flavin-dependent dehydrogenase compare
Dsui_2255 -0.3 -1.3 cAMP-binding protein compare
Dsui_1385 -0.3 -1.6 hypothetical protein compare
Dsui_1851 -0.3 -1.2 signal transduction histidine kinase compare
Dsui_2668 -0.3 -0.8 putative phosphatase compare
Dsui_1271 -0.3 -1.6 membrane-bound metallopeptidase compare
Dsui_0021 -0.3 -1.0 putative metalloendopeptidase compare
Dsui_2866 -0.3 -1.8 outer membrane receptor for ferrienterochelin and colicins compare
Dsui_3371 -0.3 -1.4 putative oxidoreductase, aryl-alcohol dehydrogenase like protein compare
Dsui_3017 -0.3 -0.9 uncharacterized conserved small protein containing a coiled-coil domain compare
Dsui_0272 -0.3 -1.5 osmosensitive K+ channel histidine kinase compare
Dsui_2772 -0.3 -1.6 uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Dsui_0575 -0.3 -1.2 electron transfer flavoprotein, alpha subunit compare
Dsui_0251 -0.3 -1.4 putative S-adenosylmethionine-dependent methyltransferase, YraL family compare
Dsui_0327 -0.3 -0.5 transcriptional regulator compare
Dsui_2066 -0.3 -1.2 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Dsui_1041 -0.3 -1.8 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase compare
Dsui_0285 -0.3 -2.2 methionine aminopeptidase, type I compare
Dsui_2230 -0.3 -0.9 conserved hypothetical integral membrane protein compare
Dsui_1879 -0.3 -1.8 luciferase family oxidoreductase, group 1 compare
Dsui_3453 -0.3 -1.0 cation diffusion facilitator family transporter compare
Dsui_1404 -0.3 -1.6 ABC-type multidrug transport system, ATPase component compare
Dsui_2150 -0.3 -1.7 hypothetical protein compare
Dsui_2322 -0.3 -1.7 hypothetical protein compare
Dsui_1864 -0.3 -1.8 hypothetical protein compare
Dsui_2265 -0.3 -1.1 DNA-directed DNA polymerase III PolC compare
Dsui_1840 -0.3 -0.9 hypothetical protein compare
Dsui_1566 -0.3 -1.7 inositol monophosphatase/fructose-1,6-bisphosphatase family protein compare
Dsui_2166 -0.3 -1.3 Fe2+-dicitrate sensor, membrane component compare
Dsui_3295 -0.3 -0.7 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Dsui_0280 -0.3 -1.0 F subunit of K+-transporting ATPase (Potass_KdpF) compare
Dsui_2305 -0.3 -0.5 electron transfer flavoprotein, beta subunit compare
Dsui_0047 -0.3 -1.4 putative integral membrane protein compare
Dsui_3436 -0.3 -0.5 beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase compare
Dsui_2530 -0.3 -1.3 pseudouridine synthase, RluA family compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in anaerobic experiments

For anaerobic Sodium perchlorate monohydrate across organisms