Experiment set3H48 for Dinoroseobacter shibae DFL-12
marine broth with Nickel (II) chloride hexahydrate 1 mM
Group: stressMedia: marine_broth_2216 + Nickel (II) chloride hexahydrate (1 mM)
Culturing: Dino_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Adam on 2/27/2014
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 826 A1,A2
Specific Phenotypes
For 4 genes in this experiment
For stress Nickel (II) chloride hexahydrate in Dinoroseobacter shibae DFL-12
For stress Nickel (II) chloride hexahydrate across organisms
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Ascorbate and aldarate metabolism
- Ubiquinone and menaquinone biosynthesis
- Methionine metabolism
- Cysteine metabolism
- Tyrosine metabolism
- 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation
- Phenylalanine metabolism
- Benzoate degradation via hydroxylation
- Tryptophan metabolism
- Selenoamino acid metabolism
- Pyruvate metabolism
- Biphenyl degradation
- 1- and 2-Methylnaphthalene degradation
- Fluorene degradation
- 3-Chloroacrylic acid degradation
- Nitrogen metabolism
- Sulfur metabolism
- Phenylpropanoid biosynthesis
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: