Experiment set3H47 for Shewanella amazonensis SB2B

Compare to:

LB with Cobalt chloride hexahydrate 0.078125 mM

200 most detrimental genes:

  gene name fitness t score description  
Sama_1754 +8.1 10.7 ecotin (RefSeq) compare
Sama_0534 +7.8 56.1 hypothetical protein (RefSeq) compare
Sama_3129 +7.4 12.1 sensory box histidine kinase/response regulator (RefSeq) compare
Sama_2521 +7.1 45.4 agmatine deiminase (RefSeq) compare
Sama_2746 +6.2 51.3 sensory box protein, putative (RefSeq) compare
Sama_2429 +6.1 22.6 DNA-binding transcriptional activator GcvA (RefSeq) compare
Sama_0264 +5.6 12.0 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Sama_0972 +3.6 20.2 hypothetical protein (RefSeq) compare
Sama_2556 +3.5 32.4 AmpG protein, putative (RefSeq) compare
Sama_1234 +3.5 9.6 peptide ABC transporter, permease protein (RefSeq) compare
Sama_3090 +3.3 16.0 nitrogen regulatory IIA protein (RefSeq) compare
Sama_1231 +3.2 15.3 peptide ABC transporter, ATP-binding protein (RefSeq) compare
Sama_0975 +3.0 16.5 phosphopentomutase (RefSeq) compare
Sama_1813 +2.9 12.3 DNA-binding transcriptional regulator HexR (RefSeq) compare
Sama_0536 +2.9 23.3 galactokinase (RefSeq) compare
Sama_0574 +2.8 21.3 glutathione synthetase (RefSeq) compare
Sama_1232 +2.8 4.8 peptide ABC transporter, ATP-binding protein (RefSeq) compare
Sama_3093 +2.8 23.2 magnesium transporter (RefSeq) compare
Sama_1235 +2.7 15.1 peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) compare
Sama_3088 +2.6 17.6 RNA polymerase factor sigma-54 (RefSeq) compare
Sama_1233 +2.4 5.3 peptide ABC transporter, permease protein (RefSeq) compare
Sama_0971 +2.4 15.8 nucleoside transporter (RefSeq) compare
Sama_1058 +2.3 4.7 glutamate--cysteine ligase (RefSeq) compare
Sama_2520 +2.3 15.7 putative transcriptional regulator (RefSeq) compare
Sama_0916 +2.2 18.9 sodium:alanine symporter family protein (RefSeq) compare
Sama_1737 ihfB +2.1 4.6 integration host factor subunit beta (RefSeq) compare
Sama_2176 +2.1 7.4 hypothetical protein (RefSeq) compare
Sama_0935 +2.1 10.2 nitrogen regulatory protein P-II (RefSeq) compare
Sama_0976 deoD +2.0 13.5 purine nucleoside phosphorylase (RefSeq) compare
Sama_3543 +2.0 18.0 glutathione reductase (RefSeq) compare
Sama_2993 +2.0 16.0 SUA5/YciO/YrdC family translation initiation protein (RefSeq) compare
Sama_0372 +2.0 14.9 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) compare
Sama_3089 +1.9 9.9 ribosomal subunit interface protein (RefSeq) compare
Sama_1694 +1.9 9.2 hypothetical protein (RefSeq) compare
Sama_0974 deoA +1.9 11.0 thymidine phosphorylase (RefSeq) compare
Sama_0788 +1.9 13.7 transcriptional regulator (RefSeq) compare
Sama_1326 +1.8 9.8 beta-hexosaminidase (RefSeq) compare
Sama_0789 +1.8 11.6 aspartate ammonia-lyase (RefSeq) compare
Sama_R0069 +1.7 2.6 tRNA-Gly (RefSeq) compare
Sama_2121 +1.7 5.2 short chain dehydrogenase (RefSeq) compare
Sama_0769 +1.7 8.0 UDP-N-acetylmuramate (RefSeq) compare
Sama_1541 +1.7 10.4 sensor protein PhoQ (RefSeq) compare
Sama_2820 apaG +1.7 6.9 ApaG (RefSeq) compare
Sama_2266 +1.7 10.3 amino acid/peptide transporter (RefSeq) compare
Sama_2902 +1.6 2.4 hypothetical protein (RefSeq) compare
Sama_0973 +1.6 6.3 deoxyribose-phosphate aldolase (RefSeq) compare
Sama_0963 +1.6 13.0 pseudouridylate synthase (RefSeq) compare
Sama_1542 +1.6 6.2 response regulator receiver protein (RefSeq) compare
Sama_1934 +1.5 8.2 long-chain-fatty-acid--CoA ligase (RefSeq) compare
Sama_1560 +1.5 7.6 M24/M37 family peptidase (RefSeq) compare
Sama_2489 trmB +1.5 8.7 tRNA (guanine-N(7)-)-methyltransferase (RefSeq) compare
Sama_1422 gltA +1.5 10.3 type II citrate synthase (RefSeq) compare
Sama_3044 +1.5 9.0 yqiA-like hydrolase, affects the cell envelope (from data) compare
Sama_0684 +1.5 11.3 aminopeptidase P, putative (RefSeq) compare
Sama_3207 +1.5 5.4 Sec-independent periplasmic protein translocation protein TatC (RefSeq) compare
Sama_1949 +1.5 2.0 diguanylate cyclase, putative (RefSeq) compare
Sama_0091 +1.4 8.0 cytochrome c, class I (RefSeq) compare
Sama_1018 +1.4 7.7 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq) compare
Sama_1933 +1.4 5.9 ribonuclease D (RefSeq) compare
Sama_1100 +1.4 3.0 acetyltransferase (RefSeq) compare
Sama_1753 +1.4 7.6 putative RNA methyltransferase (RefSeq) compare
Sama_2815 +1.4 8.8 phosphotransferase (RefSeq) compare
Sama_0848 anmK +1.4 9.9 anhydro-N-acetylmuramic acid kinase (RefSeq) compare
Sama_0193 +1.3 10.4 tRNA (uracil-5-)-methyltransferase (RefSeq) conserved
Sama_3290 +1.3 9.0 putative acyltransferase (RefSeq) compare
Sama_1805 +1.3 5.0 aromatic amino acid aminotransferase (RefSeq) compare
Sama_1344 +1.3 3.8 hypothetical protein (RefSeq) compare
Sama_3214 +1.3 7.8 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) compare
Sama_1363 +1.2 2.7 MerR family transcriptional regulator (RefSeq) compare
Sama_0320 +1.2 4.2 tRNA nucleotidyltransferase (RefSeq) compare
Sama_2251 +1.2 3.9 UDP-3-O-(3-hydroxymyristoyl)-like protein (RefSeq) compare
Sama_3240 +1.2 9.7 putative regulatory protein UhpC (RefSeq) compare
Sama_1824 +1.2 5.9 pyridoxal-5'-phosphate-dependent enzyme, beta subunit (RefSeq) conserved
Sama_0546 +1.2 7.9 HesA/MoeB/ThiF family protein (RefSeq) compare
Sama_3426 +1.1 3.5 nitrogen regulation protein (RefSeq) compare
Sama_2856 +1.1 2.0 TetR family transcriptional regulator (RefSeq) compare
Sama_0602 +1.1 5.1 hypothetical protein (RefSeq) compare
Sama_2191 secD +1.1 2.8 preprotein translocase subunit SecD (RefSeq) compare
Sama_3007 +1.1 7.7 sensor histidine kinase (RefSeq) compare
Sama_2190 secF +1.1 2.1 preprotein translocase subunit SecF (RefSeq) compare
Sama_1325 +1.1 5.7 L-serine ammonia-lyase (RefSeq) compare
Sama_1056 +1.1 3.5 hypothetical protein (RefSeq) compare
Sama_3011 argD +1.1 6.2 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) compare
Sama_2119 +1.1 5.2 putative periplasmic protease (RefSeq) compare
Sama_1801 +1.0 4.3 hypothetical protein (RefSeq) compare
Sama_2959 +1.0 2.2 hypothetical protein (RefSeq) compare
Sama_2778 +1.0 3.0 hypothetical protein (RefSeq) compare
Sama_3144 +1.0 3.6 hypothetical protein (RefSeq) compare
Sama_0771 +1.0 3.3 hypoxanthine phosphoribosyltransferase (RefSeq) compare
Sama_0425 fre +1.0 7.4 FMN reductase (RefSeq) compare
Sama_1069 +1.0 3.5 hypothetical protein (RefSeq) compare
Sama_1911 +1.0 4.0 hypothetical protein (RefSeq) compare
Sama_3023 +1.0 2.7 hflK protein (RefSeq) compare
Sama_1383 +1.0 6.9 prolyl oligopeptidase family protein (RefSeq) compare
Sama_1381 fabG +1.0 3.6 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Sama_R0128 +1.0 2.8 tRNA-Gly (RefSeq) compare
Sama_2066 +1.0 3.4 hypothetical protein (RefSeq) compare
Sama_1409 +1.0 2.6 phosphate ABC transporter, permease protein, putative (RefSeq) compare
Sama_2789 +1.0 2.6 glyoxalase family protein (RefSeq) compare
Sama_2298 +1.0 2.6 flagellar hook-basal body complex protein (FliE) (RefSeq) compare
Sama_0660 +1.0 5.0 hypothetical protein (RefSeq) compare
Sama_2738 +1.0 3.4 thiol:disulfide interchange protein DsbC (RefSeq) compare
Sama_0884 acpS +1.0 3.7 4'-phosphopantetheinyl transferase (RefSeq) compare
Sama_1454 +1.0 3.9 aminoglycoside phosphotransferase (RefSeq) compare
Sama_1751 +1.0 3.7 hypothetical protein (RefSeq) compare
Sama_1120 queF +0.9 4.3 7-cyano-7-deazaguanine reductase (RefSeq) compare
Sama_0901 +0.9 4.3 cytochrome c, class II (RefSeq) compare
Sama_1248 +0.9 4.3 hypothetical protein (RefSeq) compare
Sama_2305 +0.9 1.2 uncharacterized flagellar protein FlaG (RefSeq) compare
Sama_2821 apaH +0.9 4.7 diadenosine tetraphosphatase (RefSeq) compare
Sama_0886 +0.9 6.3 hypothetical protein (RefSeq) compare
Sama_2163 +0.9 7.1 M16 family peptidase (RefSeq) compare
Sama_3051 +0.9 5.5 hypothetical protein (RefSeq) compare
Sama_0085 +0.9 4.9 adenosine deaminase (RefSeq) compare
Sama_3155 +0.9 3.9 hypothetical protein (RefSeq) compare
Sama_0360 +0.9 1.6 hypothetical protein (RefSeq) compare
Sama_2926 +0.9 3.3 hypothetical protein (RefSeq) compare
Sama_2427 +0.9 2.1 hypothetical protein (RefSeq) compare
Sama_0862 +0.9 4.3 DNA mismatch repair protein (RefSeq) compare
Sama_2030 +0.9 3.0 hypothetical protein (RefSeq) compare
Sama_2763 +0.9 3.1 acetyltransferase (RefSeq) compare
Sama_2787 +0.9 4.6 azoreductase, putative (RefSeq) compare
Sama_2287 fliP +0.9 3.9 flagellar biosynthesis protein FliP (RefSeq) compare
Sama_0902 +0.9 2.4 putative Trp operon repressor (RefSeq) compare
Sama_2888 +0.9 1.1 adenylylsulfate kinase (RefSeq) compare
Sama_1503 +0.9 6.2 outer membrane receptor protein (RefSeq) compare
Sama_1625 +0.9 3.0 hypothetical protein (RefSeq) compare
Sama_1752 +0.9 3.9 hypothetical protein (RefSeq) compare
Sama_0845 +0.9 1.8 hypothetical protein (RefSeq) compare
Sama_2326 +0.8 4.5 hypothetical protein (RefSeq) compare
Sama_2557 +0.8 2.6 putative nucleotide-binding protein (RefSeq) compare
Sama_1413 +0.8 2.2 hypothetical protein (RefSeq) compare
Sama_2777 +0.8 4.6 aminotransferase, class V (RefSeq) compare
Sama_1045 +0.8 4.9 DNA mismatch repair protein MutS (RefSeq) compare
Sama_1649 +0.8 1.4 glucose-specific PTS system component (RefSeq) compare
Sama_1528 +0.8 1.4 GntR family transcriptional regulator (RefSeq) compare
Sama_1015 nrdR +0.8 2.4 transcriptional regulator NrdR (RefSeq) compare
Sama_3295 +0.8 3.1 methylcitrate synthase (RefSeq) compare
Sama_2049 metG +0.8 1.6 methionyl-tRNA synthetase (RefSeq) compare
Sama_3022 +0.8 2.6 hflC protein (RefSeq) compare
Sama_1126 +0.8 2.5 acetyltransferase (RefSeq) compare
Sama_2104 +0.8 1.8 glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq) compare
Sama_1508 +0.8 2.8 cysteine synthase A (RefSeq) compare
Sama_1081 +0.8 5.1 magnesium transporter, putative (RefSeq) compare
Sama_2928 +0.8 4.5 LysR family transcriptional regulator (RefSeq) compare
Sama_0831 +0.8 2.7 undecaprenyl pyrophosphate phosphatase (RefSeq) compare
Sama_2369 +0.8 4.3 hypothetical protein (RefSeq) compare
Sama_2461 +0.7 0.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein (RefSeq) compare
Sama_1870 fadE +0.7 3.8 acyl-CoA dehydrogenase (RefSeq) compare
Sama_1158 +0.7 2.7 GGDEF family protein (RefSeq) compare
Sama_2167 fadJ +0.7 3.5 multifunctional fatty acid oxidation complex subunit alpha (RefSeq) compare
Sama_2280 fliA +0.7 2.8 flagellar biosynthesis sigma factor (RefSeq) compare
Sama_1407 +0.7 1.8 ACT domain-containing protein (RefSeq) compare
Sama_1719 +0.7 1.9 zinc carboxypeptidase domain-containing protein (RefSeq) compare
Sama_3450 +0.7 2.1 hypothetical protein (RefSeq) compare
Sama_0506 +0.7 4.8 pseudouridine synthase (RefSeq) compare
Sama_0263 +0.7 3.6 YjgF-like protein (RefSeq) compare
Sama_3622 +0.7 4.2 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Sama_0904 +0.7 3.2 peptidyl-prolyl cis-trans isomerase SlyD (RefSeq) compare
Sama_2259 +0.7 2.1 MviM protein (RefSeq) compare
Sama_1817 +0.7 3.6 peptidyl-dipeptidase A (RefSeq) compare
Sama_1446 +0.7 2.2 response regulator receiver protein (RefSeq) compare
Sama_1583 +0.7 2.2 GAF domain-containing protein (RefSeq) compare
Sama_2288 +0.7 2.3 flagellar protein FliO (RefSeq) compare
Sama_1575 +0.7 1.7 hypothetical protein (RefSeq) compare
Sama_1775 +0.7 2.1 crcB protein (RefSeq) compare
Sama_1476 +0.7 2.8 hypothetical protein (RefSeq) compare
Sama_2814 +0.7 2.7 nucleotidyl transferase (RefSeq) compare
Sama_3049 +0.7 2.9 hypothetical protein (RefSeq) compare
Sama_0170 +0.7 0.9 general secretion pathway protein E (RefSeq) compare
Sama_1969 +0.7 1.8 ABC transporter, ATP-binding protein (RefSeq) compare
Sama_0899 +0.7 2.3 ribosomal subunit interface protein (RefSeq) compare
Sama_2282 flhF +0.7 2.6 flagellar biosynthesis regulator FlhF (RefSeq) compare
Sama_0798 +0.7 3.0 hypothetical protein (RefSeq) compare
Sama_2184 +0.7 2.4 phage shock protein E (RefSeq) compare
Sama_1638 +0.6 1.8 hypothetical protein (RefSeq) compare
Sama_1308 +0.6 1.3 hypothetical protein (RefSeq) compare
Sama_2061 +0.6 1.9 MutT/nudix family protein (RefSeq) compare
Sama_1131 +0.6 3.3 pseudouridylate synthase (RefSeq) compare
Sama_1672 +0.6 1.4 hydrogenase assembly chaperone hypC/hupF (RefSeq) compare
Sama_2290 fliM +0.6 2.2 flagellar motor switch protein FliM (RefSeq) compare
Sama_2283 flhA +0.6 3.8 flagellar biosynthesis protein FlhA (RefSeq) compare
Sama_1453 +0.6 3.1 transporter, putative (RefSeq) compare
Sama_1803 +0.6 1.9 bax protein, putative (RefSeq) compare
Sama_0545 +0.6 5.2 outer membrane porin, putative (RefSeq) compare
Sama_1594 +0.6 1.0 hypothetical protein (RefSeq) compare
Sama_0145 +0.6 1.6 endonuclease (RefSeq) compare
Sama_2600 +0.6 4.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (RefSeq) compare
Sama_1935 +0.6 2.8 alpha/beta fold family hydrolase (RefSeq) compare
Sama_2335 +0.6 3.5 putative sugar-phosphate nucleotide transferase (RefSeq) compare
Sama_1013 +0.6 2.4 putative ABC transporter ATP-binding protein (RefSeq) compare
Sama_0074 +0.6 2.6 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (RefSeq) compare
Sama_1290 +0.6 3.0 RNA methyltransferase (RefSeq) compare
Sama_2162 +0.6 1.8 putative phosphohistidine phosphatase, SixA (RefSeq) compare
Sama_1382 +0.6 1.4 hypothetical protein (RefSeq) compare
Sama_0118 +0.6 2.7 hypothetical protein (RefSeq) compare
Sama_2045 +0.6 1.6 aminodeoxychorismate lyase (RefSeq) compare
Sama_1686 +0.6 2.5 MutT/nudix family protein (RefSeq) compare
Sama_1800 +0.6 2.3 universal stress protein UspE (RefSeq) compare
Sama_1862 +0.6 2.1 hemolysin III family channel protein (RefSeq) compare


Specific Phenotypes

For 22 genes in this experiment

For stress Cobalt chloride hexahydrate in Shewanella amazonensis SB2B

For stress Cobalt chloride hexahydrate across organisms