Experiment set3H46 for Pseudomonas stutzeri RCH2

Compare to:

LB with benzoic acid 0.4 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_1492 -5.2 -3.6 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0062 -4.1 -11.2 tryptophan synthase, alpha subunit compare
Psest_0063 -3.5 -8.6 tryptophan synthase, beta subunit compare
Psest_1814 -3.3 -23.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0958 -3.1 -11.8 Oligoketide cyclase/lipid transport protein compare
Psest_1012 -2.9 -6.6 Signal transduction histidine kinase compare
Psest_4219 -2.8 -1.9 DNA polymerase I compare
Psest_4335 -2.6 -4.4 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0844 -2.5 -7.2 High-affinity Fe2+/Pb2+ permease compare
Psest_2104 -2.4 -4.5 IscR-regulated protein YhgI compare
Psest_1663 -2.4 -4.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_4274 -2.4 -4.6 hypothetical protein compare
Psest_0843 -2.3 -12.0 hypothetical protein compare
Psest_3648 -2.3 -9.4 anthranilate phosphoribosyltransferase compare
Psest_0845 -2.2 -1.5 hypothetical protein compare
Psest_0846 -2.2 -5.0 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2862 -2.1 -10.5 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2712 -2.1 -5.5 Surface lipoprotein compare
Psest_0542 -2.1 -7.6 AMP nucleosidase compare
Psest_1704 -2.1 -3.0 Dehydrogenases (flavoproteins) compare
Psest_2584 -2.0 -6.0 Phosphoribosylanthranilate isomerase compare
Psest_1879 -2.0 -4.0 Trk-type K+ transport systems, membrane components compare
Psest_1660 -2.0 -3.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0498 -2.0 -3.1 ribosome small subunit-dependent GTPase A compare
Psest_0193 -1.9 -1.5 conserved hypothetical protein compare
Psest_3456 -1.9 -1.8 RNA polymerase sigma factor, sigma-70 family compare
Psest_3647 -1.9 -7.4 Indole-3-glycerol phosphate synthase compare
Psest_2532 -1.8 -5.8 Uncharacterized protein conserved in bacteria compare
Psest_3129 -1.7 -2.5 tyrosine recombinase XerD compare
Psest_3790 -1.7 -7.3 Cytochrome c5 compare
Psest_2001 -1.7 -4.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3810 -1.7 -4.2 orotate phosphoribosyltransferase compare
Psest_3307 -1.7 -7.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1143 -1.7 -8.0 Small-conductance mechanosensitive channel compare
Psest_2714 -1.7 -2.6 7-cyano-7-deazaguanine reductase compare
Psest_3650 -1.6 -10.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0225 -1.6 -1.9 Predicted permease, DMT superfamily compare
Psest_3092 -1.6 -2.2 ribonuclease III, bacterial compare
Psest_3123 -1.5 -3.8 dihydroorotase, homodimeric type compare
Psest_3306 -1.5 -5.2 conserved hypothetical integral membrane protein compare
Psest_2531 -1.5 -11.3 cytochrome c oxidase accessory protein FixG compare
Psest_0279 -1.5 -6.1 methionine biosynthesis protein MetW compare
Psest_0310 -1.5 -3.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0218 -1.5 -3.3 Acyl-CoA hydrolase compare
Psest_3998 -1.5 -4.2 glutamate--cysteine ligase compare
Psest_4078 -1.5 -2.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1947 -1.4 -3.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2872 -1.4 -2.4 protein RecA compare
Psest_1292 -1.4 -7.7 monothiol glutaredoxin, Grx4 family compare
Psest_2527 -1.4 -7.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2229 -1.4 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0313 -1.4 -4.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2530 -1.4 -5.8 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3649 -1.3 -7.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1031 -1.3 -6.6 Uncharacterized protein conserved in bacteria compare
Psest_3305 -1.3 -6.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0466 -1.3 -3.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1295 -1.2 -6.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2682 -1.2 -4.7 fumarate hydratase, class II compare
Psest_3070 -1.2 -3.1 3-oxoadipyl-CoA thiolase compare
Psest_0280 -1.2 -8.3 homoserine O-acetyltransferase compare
Psest_3303 -1.2 -4.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3072 -1.2 -5.2 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit compare
Psest_0020 -1.2 -3.5 K+ transport systems, NAD-binding component compare
Psest_2850 -1.2 -1.9 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1496 -1.2 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_2946 -1.2 -5.0 septum site-determining protein MinD compare
Psest_0359 -1.2 -2.8 Transcriptional regulators compare
Psest_1242 -1.2 -2.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1452 -1.2 -6.8 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3883 -1.2 -4.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3519 -1.1 -2.7 Uncharacterized conserved protein compare
Psest_0181 -1.1 -4.8 glycine cleavage system T protein compare
Psest_1643 -1.1 -1.8 hypothetical protein compare
Psest_3565 -1.1 -0.7 hypothetical protein compare
Psest_3767 -1.1 -3.3 tyrosine recombinase XerC compare
Psest_3732 -1.1 -6.6 polyphosphate kinase 1 compare
Psest_4303 -1.1 -1.3 HEAT repeat. compare
Psest_3304 -1.1 -4.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1491 -1.1 -4.1 Cold shock proteins compare
Psest_0515 -1.1 -3.8 rare lipoprotein A compare
Psest_0489 -1.1 -2.8 phosphoserine phosphatase SerB compare
Psest_3071 -1.0 -4.1 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit compare
Psest_0309 -1.0 -1.6 RND family efflux transporter, MFP subunit compare
Psest_2590 -1.0 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0393 -1.0 -4.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3494 -1.0 -1.6 hypothetical protein compare
Psest_1506 -1.0 -4.0 queuosine biosynthesis protein QueC compare
Psest_0998 -1.0 -2.7 poly(A) polymerase compare
Psest_2863 -1.0 -4.5 Transcriptional regulator compare
Psest_0740 -0.9 -1.7 Transcriptional regulator compare
Psest_2324 -0.9 -7.5 hypothetical protein compare
Psest_2188 -0.9 -4.9 AraC-type DNA-binding domain-containing proteins compare
Psest_3944 -0.9 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3990 -0.9 -5.3 PAP2 superfamily. compare
Psest_1724 -0.9 -3.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0533 -0.9 -4.1 Sel1 repeat. compare
Psest_2037 -0.9 -4.0 uroporphyrin-III C-methyltransferase compare
Psest_2232 -0.9 -5.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2764 -0.9 -0.8 hypothetical protein compare
Psest_0186 -0.9 -2.9 Protein-disulfide isomerase compare
Psest_0691 -0.9 -6.7 ribonuclease R compare
Psest_0212 -0.9 -0.9 exodeoxyribonuclease V, gamma subunit compare
Psest_3339 -0.9 -4.0 Signal transduction histidine kinase compare
Psest_0715 -0.9 -6.9 NADH dehydrogenase, FAD-containing subunit compare
Psest_2186 -0.8 -4.1 Protein of unknown function (DUF1656). compare
Psest_2981 -0.8 -1.9 sodium pump decarboxylases, gamma subunit compare
Psest_0417 -0.8 -2.8 Acyl-CoA dehydrogenases compare
Psest_2325 -0.8 -5.0 alpha-L-glutamate ligase-related protein compare
Psest_2578 -0.8 -6.0 O-succinylhomoserine sulfhydrylase compare
Psest_2646 -0.8 -2.4 SOS regulatory protein LexA compare
Psest_3069 -0.8 -2.1 3-oxoadipate enol-lactonase compare
Psest_1958 -0.8 -2.7 Glutaredoxin-like domain (DUF836). compare
Psest_1472 -0.8 -4.4 Protein of unknown function (DUF3108). compare
Psest_3819 -0.8 -2.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3148 -0.8 -1.8 hypothetical protein compare
Psest_2187 -0.8 -4.4 Predicted membrane protein compare
Psest_3962 -0.8 -1.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_4345 -0.8 -4.7 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2589 -0.8 -5.9 3-isopropylmalate dehydrogenase compare
Psest_0722 -0.8 -4.9 Predicted ATPase compare
Psest_1525 -0.8 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_3789 -0.8 -3.0 Uncharacterized protein containing double-stranded beta helix domain compare
Psest_1280 -0.8 -6.6 TonB-dependent copper receptor compare
Psest_0696 -0.8 -3.8 hypothetical protein compare
Psest_2975 -0.8 -2.2 tRNA_Arg_CCT compare
Psest_1768 -0.7 -3.1 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_1065 -0.7 -1.8 hypothetical protein compare
Psest_2809 -0.7 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1417 -0.7 -1.3 hypothetical protein compare
Psest_1510 -0.7 -3.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3178 -0.7 -2.8 formyltetrahydrofolate deformylase compare
Psest_0516 -0.7 -5.2 D-alanyl-D-alanine carboxypeptidase compare
Psest_2184 -0.7 -4.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3226 -0.7 -1.0 Predicted membrane protein compare
Psest_3435 -0.7 -5.4 hypothetical protein compare
Psest_2017 -0.7 -3.7 Predicted acyltransferase compare
Psest_1285 -0.7 -3.5 hypothetical protein compare
Psest_3697 -0.7 -1.0 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1484 -0.7 -5.9 Thiol-disulfide isomerase and thioredoxins compare
Psest_0028 -0.7 -2.2 Coproporphyrinogen III oxidase compare
Psest_1120 -0.7 -3.6 uracil phosphoribosyltransferase compare
Psest_2434 -0.7 -2.5 Protein of unknown function (DUF2892). compare
Psest_2447 -0.7 -1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1871 -0.7 -4.9 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0175 -0.7 -3.3 Xaa-Pro aminopeptidase compare
Psest_1259 -0.7 -3.9 23S rRNA m2A2503 methyltransferase compare
Psest_1489 -0.7 -3.3 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_0673 -0.7 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2185 -0.7 -3.5 RND family efflux transporter, MFP subunit conserved
Psest_2647 -0.7 -2.2 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_4098 -0.7 -1.7 Superfamily I DNA and RNA helicases compare
Psest_0687 -0.6 -3.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0485 -0.6 -2.0 clan AA aspartic protease, TIGR02281 family compare
Psest_1655 -0.6 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2945 -0.6 -1.5 septum site-determining protein MinC compare
Psest_0260 -0.6 -1.2 Cell division protein compare
Psest_2000 -0.6 -2.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4191 -0.6 -1.5 Transcriptional regulator compare
Psest_3932 -0.6 -2.8 nitrogen regulation protein NR(I) compare
Psest_1279 -0.6 -2.0 hypothetical protein compare
Psest_2285 -0.6 -2.8 ATP-dependent protease La compare
Psest_0759 -0.6 -0.7 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2766 -0.6 -1.0 hypothetical protein compare
Psest_1656 -0.6 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3044 -0.6 -3.4 deoxycytidine triphosphate deaminase compare
Psest_3177 -0.6 -1.5 hypothetical protein compare
Psest_0294 -0.6 -1.9 Putative transcriptional regulator compare
Psest_2651 -0.6 -2.0 DNA topoisomerase I, bacterial compare
Psest_3575 -0.6 -3.1 Arabinose efflux permease compare
Psest_1516 -0.6 -1.7 Uncharacterized lipoprotein compare
Psest_1574 -0.6 -1.5 phenazine biosynthesis protein PhzF family compare
Psest_0969 -0.6 -1.1 transcription elongation factor GreA compare
Psest_4364 -0.6 -2.2 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_4088 -0.6 -2.0 Transcriptional regulators compare
Psest_3338 -0.6 -0.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4242 -0.6 -2.3 type VI secretion system FHA domain protein compare
Psest_1241 -0.6 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2238 -0.6 -1.2 hypothetical protein compare
Psest_0851 -0.6 -3.2 Transcriptional regulators compare
Psest_1284 -0.6 -2.3 exodeoxyribonuclease VII, large subunit compare
Psest_3843 -0.6 -3.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3637 -0.6 -2.6 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_3236 -0.5 -2.0 hypothetical protein compare
Psest_0719 -0.5 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1451 -0.5 -1.1 Uncharacterized ABC-type transport system, permease components compare
Psest_2648 -0.5 -1.7 hypothetical protein compare
Psest_3795 -0.5 -3.5 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0867 -0.5 -0.8 hypothetical protein compare
Psest_3272 -0.5 -2.5 TIGR00252 family protein compare
Psest_2323 -0.5 -4.1 Uncharacterized protein conserved in archaea compare
Psest_0312 -0.5 -2.4 Superfamily II DNA and RNA helicases compare
Psest_3578 -0.5 -4.7 Catalase compare
Psest_3451 -0.5 -2.4 tRNA (uracil-5-)-methyltransferase compare
Psest_4103 -0.5 -0.9 AraC-type DNA-binding domain-containing proteins compare
Psest_0520 -0.5 -0.6 hypothetical protein compare
Psest_3399 -0.5 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2810 -0.5 -2.6 5'/3'-nucleotidase SurE compare
Psest_4257 -0.5 -2.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1954 -0.5 -1.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress benzoic acid in Pseudomonas stutzeri RCH2

For stress benzoic acid across organisms