Experiment set3H43 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_1492 -5.1 -6.1 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0062 -3.8 -11.7 tryptophan synthase, alpha subunit compare
Psest_2872 -3.7 -2.5 protein RecA compare
Psest_2944 -3.5 -7.3 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0063 -3.5 -8.0 tryptophan synthase, beta subunit compare
Psest_0309 -3.2 -3.0 RND family efflux transporter, MFP subunit compare
Psest_3129 -3.1 -3.0 tyrosine recombinase XerD compare
Psest_0958 -3.0 -11.8 Oligoketide cyclase/lipid transport protein compare
Psest_4219 -2.8 -1.9 DNA polymerase I compare
Psest_1947 -2.5 -4.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3647 -2.4 -8.3 Indole-3-glycerol phosphate synthase compare
Psest_2104 -2.3 -4.5 IscR-regulated protein YhgI compare
Psest_3810 -2.1 -4.7 orotate phosphoribosyltransferase compare
Psest_1704 -2.0 -2.9 Dehydrogenases (flavoproteins) compare
Psest_0498 -1.9 -3.0 ribosome small subunit-dependent GTPase A compare
Psest_0218 -1.9 -3.7 Acyl-CoA hydrolase compare
Psest_0212 -1.9 -1.2 exodeoxyribonuclease V, gamma subunit compare
Psest_1496 -1.9 -2.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_0280 -1.8 -12.7 homoserine O-acetyltransferase compare
Psest_1242 -1.8 -3.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2285 -1.8 -5.3 ATP-dependent protease La compare
Psest_3648 -1.8 -8.5 anthranilate phosphoribosyltransferase compare
Psest_0417 -1.8 -4.3 Acyl-CoA dehydrogenases compare
Psest_4335 -1.7 -4.1 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2232 -1.7 -9.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2584 -1.7 -4.9 Phosphoribosylanthranilate isomerase compare
Psest_1031 -1.7 -8.2 Uncharacterized protein conserved in bacteria compare
Psest_4078 -1.7 -3.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3092 -1.7 -2.4 ribonuclease III, bacterial compare
Psest_0313 -1.6 -4.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0279 -1.6 -5.8 methionine biosynthesis protein MetW compare
Psest_3338 -1.5 -2.3 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0310 -1.5 -3.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1506 -1.5 -6.4 queuosine biosynthesis protein QueC compare
Psest_0193 -1.5 -1.6 conserved hypothetical protein compare
Psest_2946 -1.4 -5.6 septum site-determining protein MinD compare
Psest_3998 -1.4 -4.1 glutamate--cysteine ligase compare
Psest_3123 -1.4 -3.6 dihydroorotase, homodimeric type compare
Psest_1505 -1.3 -2.6 Organic radical activating enzymes compare
Psest_1804 -1.3 -3.5 Superfamily II DNA and RNA helicases compare
Psest_1452 -1.3 -7.4 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_2775 -1.3 -3.7 Glycerol-3-phosphate dehydrogenase compare
Psest_4191 -1.3 -2.4 Transcriptional regulator compare
Psest_3767 -1.3 -3.8 tyrosine recombinase XerC compare
Psest_3650 -1.3 -8.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3649 -1.3 -7.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2945 -1.2 -2.4 septum site-determining protein MinC compare
Psest_3148 -1.2 -2.4 hypothetical protein compare
Psest_4044 -1.2 -6.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0489 -1.1 -2.9 phosphoserine phosphatase SerB compare
Psest_1540 -1.1 -1.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_2578 -1.1 -8.0 O-succinylhomoserine sulfhydrylase compare
Psest_1765 -1.1 -5.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0542 -1.1 -5.1 AMP nucleosidase compare
Psest_3458 -1.1 -1.5 hypothetical protein compare
Psest_0744 -1.1 -1.1 Uncharacterized conserved protein compare
Psest_2714 -1.0 -1.9 7-cyano-7-deazaguanine reductase compare
Psest_0067 -1.0 -2.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_1103 -1.0 -3.1 GTP-binding protein YchF compare
Psest_0378 -1.0 -1.4 Lactate dehydrogenase and related dehydrogenases compare
Psest_1724 -1.0 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3732 -1.0 -6.1 polyphosphate kinase 1 compare
Psest_2011 -1.0 -6.4 Predicted permease compare
Psest_0181 -1.0 -5.1 glycine cleavage system T protein compare
Psest_1295 -1.0 -5.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2712 -1.0 -3.6 Surface lipoprotein compare
Psest_1643 -1.0 -1.6 hypothetical protein compare
Psest_0722 -0.9 -5.6 Predicted ATPase compare
Psest_1259 -0.9 -4.7 23S rRNA m2A2503 methyltransferase compare
Psest_1814 -0.9 -6.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1417 -0.9 -1.5 hypothetical protein compare
Psest_2862 -0.9 -5.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0537 -0.9 -1.1 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2424 -0.9 -1.7 K+ transport systems, NAD-binding component compare
Psest_1657 -0.9 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2324 -0.9 -6.9 hypothetical protein compare
Psest_1292 -0.9 -5.3 monothiol glutaredoxin, Grx4 family compare
Psest_3890 -0.9 -1.0 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3014 -0.9 -1.5 cob(I)alamin adenosyltransferase compare
Psest_3451 -0.8 -3.1 tRNA (uracil-5-)-methyltransferase compare
Psest_1516 -0.8 -2.5 Uncharacterized lipoprotein compare
Psest_2037 -0.8 -3.9 uroporphyrin-III C-methyltransferase compare
Psest_0100 -0.8 -1.6 phosphonate ABC transporter, ATP-binding protein compare
Psest_1012 -0.8 -3.2 Signal transduction histidine kinase compare
Psest_1241 -0.8 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1525 -0.8 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_0962 -0.8 -5.3 DNA repair protein RecN compare
Psest_2532 -0.8 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0028 -0.8 -2.4 Coproporphyrinogen III oxidase compare
Psest_1659 -0.8 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1655 -0.8 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1306 -0.8 -1.7 hypothetical protein compare
Psest_3519 -0.8 -1.9 Uncharacterized conserved protein compare
Psest_4303 -0.8 -1.0 HEAT repeat. compare
Psest_4393 -0.8 -3.5 Capsule polysaccharide export protein compare
Psest_1905 -0.8 -1.6 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_4256 -0.8 -1.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2229 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1663 -0.7 -1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0515 -0.7 -2.8 rare lipoprotein A compare
Psest_1510 -0.7 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1762 -0.7 -1.4 cytochrome c-type biogenesis protein CcmI compare
Psest_0691 -0.7 -5.4 ribonuclease R compare
Psest_2018 -0.7 -2.6 Uncharacterized conserved protein compare
Psest_0852 -0.7 -2.7 glucose-6-phosphate 1-dehydrogenase compare
Psest_3697 -0.7 -1.0 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0575 -0.7 -0.8 HrpA-like helicases compare
Psest_3474 -0.7 -1.7 Short-chain dehydrogenases of various substrate specificities compare
Psest_3399 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0359 -0.7 -1.9 Transcriptional regulators compare
Psest_3788 -0.7 -2.1 xanthine phosphoribosyltransferase compare
Psest_3790 -0.7 -3.8 Cytochrome c5 compare
Psest_2531 -0.7 -5.5 cytochrome c oxidase accessory protein FixG compare
Psest_2325 -0.7 -4.6 alpha-L-glutamate ligase-related protein compare
Psest_0260 -0.7 -1.0 Cell division protein compare
Psest_4274 -0.7 -1.9 hypothetical protein compare
Psest_1143 -0.7 -3.7 Small-conductance mechanosensitive channel compare
Psest_2766 -0.7 -1.1 hypothetical protein compare
Psest_3792 -0.7 -1.8 Putative translation initiation inhibitor, yjgF family compare
Psest_0998 -0.7 -2.1 poly(A) polymerase compare
Psest_0750 -0.7 -2.1 hypothetical protein compare
Psest_2810 -0.7 -3.5 5'/3'-nucleotidase SurE compare
Psest_0389 -0.7 -1.1 hypothetical protein compare
Psest_3664 -0.7 -1.6 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1879 -0.6 -1.8 Trk-type K+ transport systems, membrane components compare
Psest_1509 -0.6 -3.9 quinolinate synthetase complex, A subunit compare
Psest_2786 -0.6 -1.1 Domain of unknown function (DUF3597). compare
Psest_1695 -0.6 -1.8 Tfp pilus assembly protein PilZ compare
Psest_3173 -0.6 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_3921 -0.6 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0078 -0.6 -0.5 hypothetical protein compare
Psest_0259 -0.6 -1.2 cell division ATP-binding protein FtsE compare
Psest_0516 -0.6 -4.1 D-alanyl-D-alanine carboxypeptidase compare
Psest_3007 -0.6 -2.1 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase compare
Psest_0225 -0.6 -0.9 Predicted permease, DMT superfamily compare
Psest_2809 -0.6 -2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1013 -0.6 -1.9 phosphoribosylamine--glycine ligase compare
Psest_3497 -0.6 -1.9 Predicted metalloprotease compare
Psest_0312 -0.6 -2.6 Superfamily II DNA and RNA helicases compare
Psest_0004 -0.6 -4.1 recF protein compare
Psest_0020 -0.6 -2.0 K+ transport systems, NAD-binding component compare
Psest_4310 -0.6 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1283 -0.6 -2.1 Membrane proteins related to metalloendopeptidases compare
Psest_1768 -0.6 -1.7 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_3883 -0.6 -2.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0101 -0.6 -2.0 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_0057 -0.6 -2.0 Predicted transcriptional regulators compare
Psest_0442 -0.6 -3.7 ATPases of the AAA+ class compare
Psest_0098 -0.6 -2.1 phosphonate ABC transporter, permease protein PhnE compare
Psest_4363 -0.6 -3.2 ATPases involved in chromosome partitioning compare
Psest_3838 -0.6 -1.5 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1421 -0.5 -1.1 Glutathione S-transferase compare
Psest_3303 -0.5 -2.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3304 -0.5 -2.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2975 -0.5 -2.2 tRNA_Arg_CCT compare
Psest_1491 -0.5 -2.4 Cold shock proteins compare
Psest_2545 -0.5 -1.2 recombination protein RecR compare
Psest_4325 -0.5 -1.0 hypothetical protein compare
Psest_1975 -0.5 -3.3 Predicted transcriptional regulators compare
Psest_0508 -0.5 -3.4 gamma-glutamyl phosphate reductase compare
Psest_4285 -0.5 -2.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_1296 -0.5 -3.6 excinuclease ABC, B subunit compare
Psest_1652 -0.5 -2.7 Protein of unknown function (DUF2803). compare
Psest_1466 -0.5 -2.0 transcriptional regulator, Spx/MgsR family compare
Psest_2648 -0.5 -1.2 hypothetical protein compare
Psest_1320 -0.5 -2.3 phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein compare
Psest_1279 -0.5 -2.1 hypothetical protein compare
Psest_2953 -0.5 -1.5 Histone acetyltransferase compare
Psest_1337 -0.5 -2.7 Methyl-accepting chemotaxis protein compare
Psest_0719 -0.5 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_4307 -0.5 -1.5 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3191 -0.5 -1.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_1661 -0.5 -1.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_4151 -0.5 -1.4 Flagellar hook capping protein compare
Psest_2404 -0.5 -2.0 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases compare
Psest_0634 -0.5 -2.6 hypothetical protein compare
Psest_2527 -0.5 -3.2 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0869 -0.5 -1.2 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0226 -0.5 -1.2 Domain of unknown function (DUF3482)./GTPase of unknown function. compare
Psest_3960 -0.5 -0.5 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2671 -0.5 -1.3 Transcriptional regulator compare
Psest_2017 -0.5 -3.0 Predicted acyltransferase compare
Psest_3118 -0.5 -3.1 endonuclease III compare
Psest_2911 -0.5 -1.1 Protein of unknown function (DUF2945). compare
Psest_1871 -0.5 -3.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_1111 -0.5 -1.6 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0631 -0.5 -3.1 Site-specific recombinase XerD compare
Psest_1479 -0.5 -2.3 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3678 -0.5 -2.2 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_3795 -0.5 -3.2 Glycine/D-amino acid oxidases (deaminating) compare
Psest_4100 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1656 -0.5 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0114 -0.5 -1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_1261 -0.5 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2719 -0.5 -1.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3480 -0.5 -0.7 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2323 -0.5 -3.6 Uncharacterized protein conserved in archaea compare
Psest_2530 -0.5 -2.4 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1281 -0.5 -2.8 Small-conductance mechanosensitive channel compare
Psest_0393 -0.5 -2.2 Methylase of chemotaxis methyl-accepting proteins compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in lb experiments