Experiment set3H40 for Dechlorosoma suillum PS

Compare to:

Anaerobic growth in rich media with perchlorate electron acceptor

200 most important genes:

  gene name fitness t score description  
Dsui_3457 -3.0 -2.0 K+ transporter compare
Dsui_2304 -2.4 -2.3 electron transfer flavoprotein, alpha subunit compare
Dsui_1581 -2.4 -1.7 response regulator compare
Dsui_1381 -2.2 -1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
Dsui_2443 -1.8 -1.0 putative metal-binding protein, possibly nucleic-acid binding protein compare
Dsui_0007 -1.7 -1.1 cold shock protein compare
Dsui_0003 -1.3 -1.7 putative Zn-dependent protease compare
Dsui_3139 -1.2 -1.6 outer membrane assembly lipoprotein YfgL compare
Dsui_0199 -1.1 -2.7 Bacteriophage protein of unknown function (DUF646) compare
Dsui_1855 -1.1 -2.1 hypothetical protein compare
Dsui_1445 -1.0 -0.9 succinyl-CoA synthetase, beta subunit compare
Dsui_1970 -1.0 -1.2 metalloendopeptidase-like membrane protein compare
Dsui_0650 -1.0 -2.8 hypothetical protein compare
Dsui_0706 -1.0 -1.3 hypothetical protein compare
Dsui_3484 -0.9 -0.8 putative permease compare
Dsui_1621 -0.9 -2.6 diacylglycerol kinase compare
Dsui_1576 -0.9 -0.6 dihydrolipoamide dehydrogenase compare
Dsui_3295 -0.9 -2.8 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Dsui_1097 -0.9 -1.2 NADH/NADPH-dependent glutamate synthase small subunit compare
Dsui_3080 -0.9 -0.3 molecular chaperone GrpE (heat shock protein) compare
Dsui_2734 -0.8 -1.9 bacterioferritin-associated ferredoxin compare
Dsui_3133 -0.8 -1.5 hypothetical protein compare
Dsui_0459 -0.8 -2.2 DNA polymerase I compare
Dsui_2295 -0.8 -0.8 transcriptional regulator compare
Dsui_1110 -0.8 -2.8 branched-chain amino acid ABC-type transport system, permease component compare
Dsui_2402 -0.7 -0.8 hypothetical protein compare
Dsui_0267 -0.7 -1.0 multidrug resistance efflux pump compare
Dsui_2826 -0.7 -0.7 hypothetical protein compare
Dsui_1992 -0.7 -1.1 ribosomal protein L9 compare
Dsui_1401 -0.7 -1.4 surface lipoprotein compare
Dsui_3181 -0.7 -0.6 RND family efflux transporter, MFP subunit compare
Dsui_1629 -0.7 -0.9 Cbb3-type cytochrome oxidase, subunit 3 compare
Dsui_2499 -0.7 -1.2 MerE protein compare
Dsui_0460 -0.7 -1.7 ADP-heptose:LPS heptosyltransferase compare
Dsui_0631 -0.6 -2.5 cytochrome c551/c552 compare
Dsui_2522 -0.6 -1.3 hypothetical protein compare
Dsui_2368 -0.6 -1.2 serine O-acetyltransferase compare
Dsui_1456 -0.6 -2.8 HD-GYP domain-containing protein compare
Dsui_2867 -0.6 -1.6 surface antigen family protein compare
Dsui_1349 -0.6 -2.9 hypothetical protein compare
Dsui_2316 -0.6 -0.8 hypothetical protein compare
Dsui_2164 -0.6 -1.4 signal transduction histidine kinase compare
Dsui_0743 -0.6 -3.4 phosphotransferase system HPr (HPr) family protein compare
Dsui_2563 -0.6 -1.2 hypothetical protein compare
Dsui_0268 -0.6 -0.9 ABC-type multidrug transport system, ATPase component compare
Dsui_0971 -0.6 -2.6 poly(R)-hydroxyalkanoic acid synthase, class I compare
Dsui_2554 -0.6 -1.2 hypothetical protein compare
Dsui_2873 -0.6 -0.6 Peroxiredoxin compare
Dsui_1668 -0.6 -3.0 alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase compare
Dsui_0471 -0.6 -2.8 cobalamin 5''-phosphate synthase/cobalamin synthase compare
Dsui_0576 -0.6 -1.6 electron transfer flavoprotein, beta subunit compare
Dsui_2676 -0.5 -2.1 putative membrane protein compare
Dsui_2961 -0.5 -2.3 precorrin isomerase compare
Dsui_1032 -0.5 -1.8 Flp pilus assembly protein TadD compare
Dsui_1652 -0.5 -0.6 FeoA-like protein compare
Dsui_1832 -0.5 -2.0 nitrate ABC transporter, permease protein compare
Dsui_2924 -0.5 -2.2 hypothetical protein compare
Dsui_3330 -0.5 -0.8 hypothetical protein compare
Dsui_0301 -0.5 -1.9 histidine kinase compare
Dsui_1857 -0.5 -1.8 putative permease, DMT superfamily compare
Dsui_0032 -0.5 -1.4 NAD-dependent protein deacetylase, SIR2 family compare
Dsui_3440 -0.5 -1.3 Protein of unknown function (DUF2892) compare
Dsui_2540 -0.5 -0.9 ribosomal protein S12 methylthiotransferase RimO compare
Dsui_2045 -0.5 -1.6 hypothetical protein compare
Dsui_0500 -0.5 -0.9 (p)ppGpp synthetase, RelA/SpoT family compare
Dsui_3256 -0.5 -2.0 Raf kinase inhibitor-like protein, YbhB/YbcL family compare
Dsui_1104 -0.5 -2.1 putative thioesterase compare
Dsui_1356 -0.5 -1.6 hypothetical protein compare
Dsui_0399 -0.5 -2.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
Dsui_0304 -0.5 -1.8 hypothetical protein compare
Dsui_0523 -0.5 -0.9 putative membrane protein compare
Dsui_2820 -0.5 -2.4 putative hydrolase or acyltransferase of alpha/beta superfamily compare
Dsui_1964 -0.5 -0.7 integration host factor, alpha subunit compare
Dsui_2315 -0.5 -1.3 Stress responsive A/B Barrel Domain-containing protein compare
Dsui_1840 -0.5 -2.1 hypothetical protein compare
Dsui_1687 -0.5 -1.4 nitrogen regulatory protein PII compare
Dsui_1368 -0.5 -2.3 hypothetical protein compare
Dsui_3376 -0.5 -2.5 aspartate/tyrosine/aromatic aminotransferase compare
Dsui_2603 -0.5 -1.7 hypothetical protein compare
Dsui_2127 -0.5 -0.4 flavodoxin reductase family protein compare
Dsui_1873 -0.5 -1.3 transcriptional regulator compare
Dsui_2553 -0.5 -1.0 Phage X family/Phage replication protein CRI compare
Dsui_1865 -0.5 -3.1 PAS domain S-box compare
Dsui_0742 -0.5 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
Dsui_2697 -0.4 -1.7 peptide deformylase compare
Dsui_3231 -0.4 -2.2 hypothetical protein compare
Dsui_1682 -0.4 -1.1 biopolymer transport protein compare
Dsui_3102 -0.4 -1.9 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Dsui_1400 -0.4 -1.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Dsui_0935 -0.4 -0.4 cytochrome c5 compare
Dsui_2713 -0.4 -2.1 membrane protease subunit, stomatin/prohibitin compare
Dsui_0016 -0.4 -2.4 transcriptional regulator compare
Dsui_0938 -0.4 -2.8 HD-GYP domain-containing protein compare
Dsui_0922 -0.4 -3.3 outer membrane receptor protein compare
Dsui_0477 -0.4 -1.0 tol-pal system protein YbgF compare
Dsui_2097 -0.4 -2.1 putative phosphohydrolase compare
Dsui_1978 -0.4 -0.3 putative lipoprotein compare
Dsui_1275 -0.4 -0.8 protein-export chaperone SecB compare
Dsui_3464 -0.4 -1.8 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Dsui_2773 -0.4 -1.6 putative enzyme involved in biosynthesis of extracellular polysaccharides compare
Dsui_3469 -0.4 -1.2 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Dsui_1590 -0.4 -1.9 hypothetical protein compare
Dsui_2941 -0.4 -1.5 hypothetical protein compare
Dsui_0252 -0.4 -0.8 TIGR00252 family protein compare
Dsui_0623 -0.4 -1.3 putative lipoprotein involved in nitrous oxide reduction compare
Dsui_2329 -0.4 -1.9 putative dehydrogenase compare
Dsui_1225 -0.4 -2.5 sporulation related protein compare
Dsui_3426 -0.4 -2.0 transcriptional regulator compare
Dsui_0195 -0.4 -1.5 Caudovirus prohead protease compare
Dsui_2640 -0.4 -1.1 Cytochrome c compare
Dsui_3130 -0.4 -0.5 tRNA-Leu compare
Dsui_1482 -0.4 -1.1 hypothetical protein compare
Dsui_3081 -0.4 -0.3 chaperone protein DnaK compare
Dsui_2275 -0.4 -0.9 putative transcriptional regulator compare
Dsui_2895 -0.4 -1.4 ABC-type uncharacterized transport system, periplasmic component compare
Dsui_3408 -0.4 -2.7 hypothetical protein compare
Dsui_1833 -0.4 -2.0 nitrate transport ATP-binding subunits C and D compare
Dsui_2103 -0.4 -1.9 hypothetical protein compare
Dsui_2031 -0.4 -1.1 putative thioesterase compare
Dsui_0604 -0.4 -2.5 pilus retraction protein PilT compare
Dsui_3028 -0.4 -1.0 coenzyme F420-reducing hydrogenase, gamma subunit compare
Dsui_1113 -0.4 -1.5 ABC-type branched-chain amino acid transport systems, ATPase component compare
Dsui_1955 -0.4 -0.5 3'-5' exonuclease compare
Dsui_2872 -0.4 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Dsui_3495 -0.4 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Dsui_0305 -0.4 -1.7 transcriptional regulator compare
Dsui_2069 -0.4 -2.2 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
Dsui_3026 -0.4 -1.0 hydrogenase maturation protease compare
Dsui_2948 -0.4 -1.0 RNA polymerase sigma factor, sigma-70 family compare
Dsui_3168 -0.4 -1.0 hypothetical protein compare
Dsui_3478 -0.4 -1.4 hypothetical protein compare
Dsui_1846 -0.4 -1.8 outer membrane phospholipase A compare
Dsui_2077 -0.4 -1.9 cAMP-binding protein compare
Dsui_0201 -0.4 -1.4 hypothetical protein compare
Dsui_2535 -0.4 -1.9 putative divalent heavy-metal cations transporter compare
Dsui_2879 -0.4 -1.7 methyl-accepting chemotaxis protein compare
Dsui_1153 -0.4 -2.0 Ni,Fe-hydrogenase I small subunit compare
Dsui_2358 -0.4 -1.5 signal transduction histidine kinase compare
Dsui_0487 -0.4 -1.9 hemerythrin HHE cation binding domain-containing protein compare
Dsui_2965 -0.4 -0.8 cobalamin biosynthesis protein CbiG compare
Dsui_0901 -0.4 -0.6 hypothetical protein compare
Dsui_1891 -0.4 -1.2 enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase compare
Dsui_0675 -0.4 -0.7 putative dithiol-disulfide isomerase involved in polyketide biosynthesis compare
Dsui_3456 -0.4 -0.9 hypothetical protein compare
Dsui_0709 -0.4 -1.6 bacterioferritin compare
Dsui_2573 -0.4 -0.9 hypothetical protein compare
Dsui_0029 -0.3 -1.6 putative pyrophosphatase compare
Dsui_0535 -0.3 -1.1 hypothetical protein compare
Dsui_0270 -0.3 -1.1 transcriptional regulator compare
Dsui_3106 -0.3 -1.4 hypothetical protein compare
Dsui_2154 -0.3 -0.8 molybdopterin converting factor, large subunit compare
Dsui_1307 -0.3 -2.1 transcriptional regulator compare
Dsui_3271 -0.3 -1.3 ATP-dependent protease Clp, ATPase subunit compare
Dsui_3088 -0.3 -1.2 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Dsui_2781 -0.3 -1.4 PAS domain S-box compare
Dsui_1096 -0.3 -1.4 glutamate synthase family protein compare
Dsui_2777 -0.3 -1.9 aminoacyl-histidine dipeptidase compare
Dsui_2306 -0.3 -0.5 transcriptional regulator compare
Dsui_0937 -0.3 -1.7 hypothetical protein compare
Dsui_3205 -0.3 -2.3 pseudouridine synthase, RluA family compare
Dsui_1302 -0.3 -2.2 RNA polymerase sigma factor, sigma-70 family compare
Dsui_3174 -0.3 -2.1 DNA/RNA helicase, superfamily II compare
Dsui_2255 -0.3 -1.2 cAMP-binding protein compare
Dsui_1351 -0.3 -1.3 DNA/RNA helicase, superfamily II compare
Dsui_0292 -0.3 -1.2 putative signal transduction protein containing EAL and modified HD-GYP domains compare
Dsui_2137 -0.3 -0.9 queuosine biosynthesis protein QueD compare
Dsui_3415 -0.3 -2.1 FAD/FMN-dependent dehydrogenase compare
Dsui_1061 -0.3 -2.0 membrane-bound lytic murein transglycosylase compare
Dsui_1045 -0.3 -1.9 hypothetical protein compare
Dsui_2034 -0.3 -1.5 DNA gyrase inhibitor compare
Dsui_1264 -0.3 -1.3 fructose-2,6-bisphosphatase compare
Dsui_1607 -0.3 -1.5 putative membrane-associated protein compare
Dsui_0687 -0.3 -1.3 Protein of unknown function (DUF2905) compare
Dsui_3290 -0.3 -1.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Dsui_3194 -0.3 -0.8 pseudouridylate synthase I compare
Dsui_0103 -0.3 -1.9 transcriptional regulator compare
Dsui_2977 -0.3 -1.5 RNA polymerase sigma factor, sigma-70 family compare
Dsui_1159 -0.3 -1.8 hydrogenase expression/formation protein HypD compare
Dsui_3124 -0.3 -2.0 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Dsui_0033 -0.3 -1.0 Zn-dependent protease with chaperone function compare
Dsui_2187 -0.3 -1.0 acyl-CoA synthetase/AMP-acid ligase compare
Dsui_3459 -0.3 -1.7 septum site-determining protein MinD compare
Dsui_2333 -0.3 -1.0 uracil phosphoribosyltransferase compare
Dsui_1249 -0.3 -1.3 hypothetical protein compare
Dsui_2495 -0.3 -1.6 mercuric transport protein periplasmic component compare
Dsui_2150 -0.3 -1.0 hypothetical protein compare
Dsui_1820 -0.3 -1.3 ABC-type branched-chain amino acid transport system, periplasmic component compare
Dsui_3531 -0.3 -0.7 Protein of unknown function (DUF3619) compare
Dsui_2979 -0.3 -1.2 electron transport complex, RnfABCDGE type, A subunit compare
Dsui_0551 -0.3 -1.0 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN compare
Dsui_0298 -0.3 -1.9 Kef-type K+ ransport system, predicted NAD-binding component compare
Dsui_1002 -0.3 -1.0 prolyl oligopeptidase family protein compare
Dsui_1665 -0.3 -1.1 hypothetical protein compare
Dsui_1055 -0.3 -1.7 sporulation related protein compare
Dsui_3375 -0.3 -0.5 hypothetical protein compare
Dsui_2955 -0.3 -2.3 cobalamin biosynthesis protein CbiM compare
Dsui_0023 -0.3 -1.3 acetylornithine/succinylornithine aminotransferase compare
Dsui_2806 -0.3 -1.9 PAS domain S-box compare
Dsui_3401 -0.3 -1.5 putative Zn-dependent protease-like protein compare
Dsui_3228 -0.3 -1.1 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Dechlorosoma suillum PS in anaerobic experiments