Experiment set3H37 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium nitrate 250 mM

200 most important genes:

  gene name fitness t score description  
Psest_0013 -4.3 -9.1 Lauroyl/myristoyl acyltransferase compare
Psest_2025 -4.1 -1.3 cold shock domain protein CspD compare
Psest_3146 -4.1 -2.1 hypothetical protein compare
Psest_0516 -4.0 -6.1 D-alanyl-D-alanine carboxypeptidase compare
Psest_2975 -4.0 -3.1 tRNA_Arg_CCT compare
Psest_1871 -3.9 -8.2 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0062 -3.8 -6.4 tryptophan synthase, alpha subunit compare
Psest_0844 -3.8 -4.5 High-affinity Fe2+/Pb2+ permease compare
Psest_1724 -3.7 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3862 -3.6 -12.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0843 -3.6 -5.9 hypothetical protein compare
Psest_0442 -3.6 -8.2 ATPases of the AAA+ class compare
Psest_1492 -3.5 -4.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0998 -3.5 -2.4 poly(A) polymerase compare
Psest_0846 -3.5 -3.3 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1510 -3.4 -2.3 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3270 -3.4 -2.0 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_1567 -3.4 -2.7 Transcriptional regulator compare
Psest_0113 -3.4 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_0063 -3.3 -3.2 tryptophan synthase, beta subunit compare
Psest_0575 -3.3 -1.0 HrpA-like helicases compare
Psest_2624 -3.3 -3.0 hypothetical protein compare
Psest_2945 -3.3 -2.2 septum site-determining protein MinC compare
Psest_0533 -3.3 -3.9 Sel1 repeat. compare
Psest_2293 -3.2 -1.4 hypothetical protein compare
Psest_3960 -3.2 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2946 -3.2 -3.1 septum site-determining protein MinD compare
Psest_3070 -3.2 -2.4 3-oxoadipyl-CoA thiolase compare
Psest_0257 -3.2 -2.8 Predicted Zn-dependent peptidases compare
Psest_3305 -3.2 -4.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0691 -3.1 -10.4 ribonuclease R compare
Psest_3391 -3.1 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0309 -3.1 -1.6 RND family efflux transporter, MFP subunit compare
Psest_3303 -3.1 -3.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2712 -3.1 -5.2 Surface lipoprotein compare
Psest_3908 -3.1 -0.9 Cytochrome c553 compare
Psest_3576 -3.0 -17.7 excinuclease ABC, A subunit conserved
Psest_0218 -3.0 -2.9 Acyl-CoA hydrolase compare
Psest_1292 -3.0 -5.7 monothiol glutaredoxin, Grx4 family compare
Psest_0161 -3.0 -2.0 Membrane-bound metallopeptidase compare
Psest_2590 -3.0 -1.3 3-isopropylmalate dehydratase, small subunit compare
Psest_3307 -3.0 -5.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1686 -3.0 -3.5 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0845 -2.9 -0.9 hypothetical protein compare
Psest_0958 -2.9 -7.3 Oligoketide cyclase/lipid transport protein compare
Psest_2067 -2.9 -1.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3562 -2.9 -2.3 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_0181 -2.9 -7.3 glycine cleavage system T protein compare
Psest_2718 -2.9 -1.8 hypothetical protein compare
Psest_3301 -2.8 -4.0 Predicted transcriptional regulator, BolA superfamily compare
Psest_0542 -2.8 -2.7 AMP nucleosidase compare
Psest_3118 -2.8 -8.2 endonuclease III compare
Psest_4044 -2.8 -7.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2981 -2.8 -1.9 sodium pump decarboxylases, gamma subunit compare
Psest_2308 -2.8 -1.2 Predicted Fe-S protein compare
Psest_0455 -2.8 -8.0 ADP-heptose:LPS heptosyltransferase compare
Psest_3519 -2.8 -2.3 Uncharacterized conserved protein compare
Psest_2132 -2.7 -11.8 Outer membrane protein compare
Psest_2104 -2.7 -1.9 IscR-regulated protein YhgI compare
Psest_0489 -2.7 -1.9 phosphoserine phosphatase SerB compare
Psest_1259 -2.7 -5.7 23S rRNA m2A2503 methyltransferase compare
Psest_3304 -2.7 -4.1 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3129 -2.7 -1.6 tyrosine recombinase XerD compare
Psest_3148 -2.7 -1.4 hypothetical protein compare
Psest_3306 -2.6 -4.0 conserved hypothetical integral membrane protein compare
Psest_1217 -2.6 -5.5 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_0445 -2.6 -12.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1012 -2.5 -4.1 Signal transduction histidine kinase compare
Psest_0144 -2.5 -5.8 Fe-S cluster protector protein compare
Psest_0359 -2.5 -2.4 Transcriptional regulators compare
Psest_1242 -2.4 -1.7 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2944 -2.4 -4.5 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2645 -2.4 -5.4 Transcriptional regulator compare
Psest_0168 -2.4 -5.6 Uncharacterized conserved protein conserved
Psest_0310 -2.4 -1.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3777 -2.4 -2.3 diguanylate cyclase (GGDEF) domain compare
Psest_2023 -2.4 -3.0 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1516 -2.4 -3.2 Uncharacterized lipoprotein compare
Psest_0193 -2.4 -1.0 conserved hypothetical protein compare
Psest_1765 -2.4 -5.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2316 -2.4 -11.6 phosphoenolpyruvate synthase compare
Psest_3810 -2.4 -3.6 orotate phosphoribosyltransferase compare
Psest_1999 -2.4 -1.4 pseudouridine synthase compare
Psest_1535 -2.4 -3.1 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_1296 -2.3 -8.0 excinuclease ABC, B subunit conserved
Psest_2285 -2.3 -3.9 ATP-dependent protease La compare
Psest_3768 -2.3 -4.1 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_1700 -2.3 -4.6 Transcriptional regulator compare
Psest_3532 -2.3 -6.7 Peptidase propeptide and YPEB domain. compare
Psest_0186 -2.3 -3.8 Protein-disulfide isomerase compare
Psest_3323 -2.3 -2.2 ribonuclease, Rne/Rng family compare
Psest_4396 -2.3 -11.9 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1163 -2.3 -3.1 diguanylate cyclase (GGDEF) domain compare
Psest_2997 -2.3 -9.0 Long-chain fatty acid transport protein compare
Psest_1120 -2.3 -5.4 uracil phosphoribosyltransferase compare
Psest_2130 -2.3 -3.0 exodeoxyribonuclease III compare
Psest_3002 -2.2 -1.2 Putative translation initiation inhibitor, yjgF family compare
Psest_2629 -2.2 -2.2 Flp pilus assembly protein, pilin Flp compare
Psest_0515 -2.2 -3.0 rare lipoprotein A compare
Psest_1692 -2.2 -8.5 conserved hypothetical protein, YceG family compare
Psest_3456 -2.2 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_3645 -2.2 -7.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4098 -2.2 -2.1 Superfamily I DNA and RNA helicases compare
Psest_1098 -2.2 -8.2 Restriction endonuclease S subunits compare
Psest_1772 -2.2 -3.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0280 -2.2 -11.5 homoserine O-acetyltransferase compare
Psest_1506 -2.2 -3.0 queuosine biosynthesis protein QueC compare
Psest_1302 -2.2 -3.3 Predicted thioesterase compare
Psest_4286 -2.2 -10.2 Glutamine synthetase compare
Psest_1595 -2.2 -0.9 Copper chaperone compare
Psest_3732 -2.1 -7.2 polyphosphate kinase 1 compare
Psest_2730 -2.1 -4.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3860 -2.1 -3.8 Predicted permeases compare
Psest_2011 -2.1 -7.3 Predicted permease compare
Psest_0146 -2.1 -7.0 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_2133 -2.1 -6.8 Uncharacterized protein conserved in bacteria compare
Psest_3626 -2.1 -5.6 hypothetical protein compare
Psest_1817 -2.1 -5.2 hypothetical protein compare
Psest_0440 -2.0 -1.9 hypothetical protein compare
Psest_0296 -2.0 -6.1 glutathione synthetase, prokaryotic compare
Psest_3890 -2.0 -1.0 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1947 -2.0 -1.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0114 -2.0 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_3536 -2.0 -1.2 hypothetical protein compare
Psest_3092 -2.0 -1.3 ribonuclease III, bacterial compare
Psest_2933 -2.0 -8.4 Signal transduction histidine kinase compare
Psest_0301 -1.9 -7.6 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2520 -1.9 -1.4 Predicted SAM-dependent methyltransferase compare
Psest_0725 -1.9 -2.6 Negative regulator of beta-lactamase expression compare
Psest_3647 -1.9 -5.6 Indole-3-glycerol phosphate synthase compare
Psest_0708 -1.9 -1.7 outer membrane assembly lipoprotein YfiO compare
Psest_1612 -1.9 -3.4 ABC-type multidrug transport system, ATPase component compare
Psest_3767 -1.9 -2.8 tyrosine recombinase XerC compare
Psest_1167 -1.9 -0.8 hypothetical protein compare
Psest_1943 -1.9 -6.3 MoxR-like ATPases compare
Psest_1022 -1.9 -5.0 Thiol:disulfide interchange protein compare
Psest_3535 -1.9 -1.8 hypothetical protein compare
Psest_3712 -1.9 -4.5 Type II secretory pathway, component ExeA (predicted ATPase) compare
Psest_4219 -1.9 -1.3 DNA polymerase I compare
Psest_0297 -1.9 -4.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0320 -1.9 -2.4 ABC-type multidrug transport system, ATPase component compare
Psest_2458 -1.9 -2.0 MoxR-like ATPases compare
Psest_1824 -1.8 -3.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0120 -1.8 -3.9 hypothetical protein compare
Psest_4345 -1.8 -7.5 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3718 -1.8 -4.7 Tfp pilus assembly protein PilN compare
Psest_1763 -1.8 -2.9 hypothetical protein compare
Psest_3998 -1.8 -1.8 glutamate--cysteine ligase compare
Psest_1884 -1.8 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1142 -1.8 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_2967 -1.8 -2.8 flagellar basal-body rod protein FlgC compare
Psest_2955 -1.8 -2.5 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_2138 -1.7 -2.1 RND family efflux transporter, MFP subunit compare
Psest_1279 -1.7 -3.3 hypothetical protein compare
Psest_2862 -1.7 -6.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2872 -1.7 -1.6 protein RecA compare
Psest_2612 -1.7 -2.6 hypothetical protein compare
Psest_2259 -1.7 -8.5 excinuclease ABC, C subunit conserved
Psest_0357 -1.7 -2.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0393 -1.7 -4.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1260 -1.7 -4.8 type IV pilus biogenesis/stability protein PilW compare
Psest_0508 -1.7 -5.2 gamma-glutamyl phosphate reductase compare
Psest_1663 -1.7 -2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0311 -1.7 -2.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1241 -1.6 -5.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1498 -1.6 -2.1 tol-pal system-associated acyl-CoA thioesterase compare
Psest_1942 -1.6 -5.4 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2370 -1.6 -2.4 Protein of unknown function (DUF1652). compare
Psest_2162 -1.6 -5.4 Uncharacterized conserved protein compare
Psest_3413 -1.6 -1.5 hypothetical protein compare
Psest_3014 -1.6 -1.2 cob(I)alamin adenosyltransferase compare
Psest_1877 -1.6 -2.7 AraC-type DNA-binding domain-containing proteins compare
Psest_0313 -1.6 -3.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4154 -1.6 -3.8 flagella basal body P-ring formation protein FlgA compare
Psest_1052 -1.6 -2.3 Uncharacterized protein involved in chromosome partitioning compare
Psest_2939 -1.6 -3.5 Predicted membrane protein compare
Psest_2504 -1.6 -2.9 flagellar biosynthetic protein FliS compare
Psest_2249 -1.6 -5.6 Protein-tyrosine-phosphatase compare
Psest_3664 -1.6 -2.2 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3918 -1.6 -4.7 hypothetical protein compare
Psest_2035 -1.6 -2.2 crcB protein compare
Psest_0487 -1.6 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_1804 -1.6 -2.3 Superfamily II DNA and RNA helicases compare
Psest_4123 -1.5 -5.0 Site-specific recombinase XerD compare
Psest_1215 -1.5 -1.7 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_1525 -1.5 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_1905 -1.5 -1.5 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3745 -1.5 -2.4 Uncharacterized enzyme of heme biosynthesis compare
Psest_0831 -1.5 -0.6 hypothetical protein compare
Psest_2123 -1.5 -1.1 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0216 -1.5 -2.2 Predicted permeases compare
Psest_3720 -1.5 -9.9 penicillin-binding protein, 1A family compare
Psest_0464 -1.5 -9.4 Mannosyltransferase OCH1 and related enzymes compare
Psest_1207 -1.5 -2.8 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
Psest_2386 -1.5 -3.1 GTP cyclohydrolase I compare
Psest_3343 -1.5 -2.6 Predicted periplasmic protein compare
Psest_3716 -1.5 -5.5 Tfp pilus assembly protein PilP compare
Psest_2070 -1.5 -6.7 FOG: LysM repeat compare
Psest_0252 -1.5 -8.8 hypothetical protein compare
Psest_1598 -1.5 -2.5 heavy metal response regulator compare


Specific Phenotypes

For 56 genes in this experiment

For stress Sodium nitrate in Pseudomonas stutzeri RCH2

For stress Sodium nitrate across organisms