Experiment set3H33 for Shewanella amazonensis SB2B

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Cytidine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Sama_3129 +8.5 17.7 sensory box histidine kinase/response regulator (RefSeq) compare
Sama_1737 ihfB +3.8 14.6 integration host factor subunit beta (RefSeq) compare
Sama_2121 +3.0 11.9 short chain dehydrogenase (RefSeq) compare
Sama_3207 +2.9 15.4 Sec-independent periplasmic protein translocation protein TatC (RefSeq) compare
Sama_0840 +2.8 13.9 aspartate carbamoyltransferase (RefSeq) compare
Sama_3019 +2.7 13.0 ubiquinol-cytochrome c reductase cytochrome c1 subunit (RefSeq) compare
Sama_1794 +2.6 17.2 cytochrome c oxidase, cbb3-type, subunit III (RefSeq) compare
Sama_3018 sspA +2.5 15.3 stringent starvation protein A (RefSeq) compare
Sama_1791 +2.5 19.7 cytochrome c oxidase, cbb3-type, subunit I (RefSeq) compare
Sama_1795 +2.5 10.5 hypothetical protein (RefSeq) compare
Sama_2461 +2.5 2.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein (RefSeq) compare
Sama_1796 +2.4 19.7 cation transporter E1-E2 family ATPase (RefSeq) compare
Sama_0086 +2.4 18.2 coproporphyrinogen III oxidase (RefSeq) compare
Sama_0321 pyrE +2.4 16.0 orotate phosphoribosyltransferase (RefSeq) compare
Sama_3021 +2.3 15.7 ubiquinol--cytochrome-c reductase (RefSeq) compare
Sama_1792 +2.3 11.7 cytochrome c oxidase, cbb3-type, subunit II (RefSeq) compare
Sama_0534 +2.3 15.5 hypothetical protein (RefSeq) compare
Sama_3089 +2.2 14.2 ribosomal subunit interface protein (RefSeq) compare
Sama_1002 +2.2 5.8 ferredoxin, 4Fe-4S (RefSeq) compare
Sama_3020 +2.2 17.6 ubiquinol-cytochrome c reductase, cytochrome b (RefSeq) compare
Sama_1790 +2.2 11.6 hypothetical protein (RefSeq) compare
Sama_0808 +2.0 4.8 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Sama_2286 +2.0 4.3 flagellar biosynthetic protein FliQ (RefSeq) compare
Sama_3633 +2.0 18.4 iron-sulfur cluster-binding protein (RefSeq) compare
Sama_1798 +2.0 10.2 hypothetical protein (RefSeq) compare
Sama_1711 +1.9 13.8 dihydrolipoamide acetyltransferase (RefSeq) compare
Sama_0091 +1.8 12.2 cytochrome c, class I (RefSeq) compare
Sama_1793 +1.8 5.2 cytochrome c oxidase, cbb3-type, CcoQ subunit (RefSeq) compare
Sama_1740 +1.8 5.8 orotidine 5'-phosphate decarboxylase (RefSeq) compare
Sama_0971 +1.7 12.3 nucleoside transporter (RefSeq) compare
Sama_2302 fliS +1.7 5.3 flagellar protein FliS (RefSeq) compare
Sama_1710 +1.7 7.4 alpha keto acid dehydrogenase complex, E1 component, beta subunit (RefSeq) compare
Sama_1709 +1.7 11.4 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Sama_1004 +1.7 13.7 U32 family peptidase (RefSeq) compare
Sama_2317 flgC +1.7 4.2 flagellar basal body rod protein FlgC (RefSeq) compare
Sama_0248 +1.6 11.5 cytochrome c-type biogenesis protein CcmF (RefSeq) compare
Sama_2296 fliG +1.6 3.2 flagellar motor switch protein G (RefSeq) compare
Sama_0242 +1.6 5.4 heme exporter protein CcmD (RefSeq) compare
Sama_2240 +1.6 10.1 glucose-1-phosphate thymidylyltransferase (RefSeq) compare
Sama_3170 metL +1.5 12.4 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq) compare
Sama_2220 +1.5 12.1 transcriptional regulatory protein TyrR (RefSeq) compare
Sama_2335 +1.5 7.4 putative sugar-phosphate nucleotide transferase (RefSeq) compare
Sama_1593 +1.5 3.9 dihydroorotate dehydrogenase 2 (RefSeq) compare
Sama_2316 flgD +1.5 6.4 flagellar basal body rod modification protein (RefSeq) compare
Sama_1247 +1.5 6.5 primosomal replication protein N'', putative (RefSeq) compare
Sama_2283 flhA +1.5 9.1 flagellar biosynthesis protein FlhA (RefSeq) compare
Sama_2284 flhB +1.5 4.3 flagellar biosynthesis protein FlhB (RefSeq) compare
Sama_2315 flgE +1.5 8.6 flagellar hook protein FlgE (RefSeq) compare
Sama_2280 fliA +1.5 6.8 flagellar biosynthesis sigma factor (RefSeq) compare
Sama_0244 +1.5 8.1 heme exporter protein CcmB (RefSeq) compare
Sama_1234 +1.5 0.9 peptide ABC transporter, permease protein (RefSeq) compare
Sama_2275 +1.5 1.8 hypothetical protein (RefSeq) compare
Sama_2294 fliI +1.4 8.6 flagellum-specific ATP synthase (RefSeq) compare
Sama_2313 flgG +1.4 7.8 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_1601 +1.4 4.9 hypothetical protein (RefSeq) compare
Sama_1845 +1.4 7.5 methyltransferase, putative (RefSeq) compare
Sama_2295 fliH +1.4 5.4 flagellar assembly protein H (RefSeq) compare
Sama_3216 +1.4 2.5 thioredoxin (RefSeq) compare
Sama_2311 flgI +1.4 6.8 flagellar basal body P-ring protein (RefSeq) compare
Sama_2336 +1.4 7.2 N-acylneuraminate cytidylyltransferase (RefSeq) compare
Sama_2073 +1.4 8.6 hypothetical protein (RefSeq) compare
Sama_3093 +1.4 11.0 magnesium transporter (RefSeq) compare
Sama_2331 +1.4 5.4 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Sama_1787 +1.3 1.8 hypothetical protein (RefSeq) compare
Sama_2333 +1.3 3.3 hypothetical protein (RefSeq) compare
Sama_0249 +1.3 6.9 thiol:disulfide interchange protein DsbE (RefSeq) compare
Sama_2668 +1.3 2.1 PspA/IM30 (RefSeq) compare
Sama_2124 +1.3 6.1 pseudouridine synthase, Rsu (RefSeq) compare
Sama_2321 flgA +1.3 10.3 flagellar basal body P-ring biosynthesis protein FlgA (RefSeq) compare
Sama_1704 +1.3 8.2 alpha/beta fold family hydrolase (RefSeq) compare
Sama_2312 flgH +1.3 7.0 flagellar basal body L-ring protein (RefSeq) compare
Sama_2318 flgB +1.3 4.6 flagellar basal body rod protein FlgB (RefSeq) compare
Sama_2288 +1.3 5.8 flagellar protein FliO (RefSeq) compare
Sama_2162 +1.3 7.0 putative phosphohistidine phosphatase, SixA (RefSeq) compare
Sama_2298 +1.3 5.0 flagellar hook-basal body complex protein (FliE) (RefSeq) compare
Sama_2293 +1.3 5.0 flagellar protein FliJ (RefSeq) compare
Sama_2156 +1.3 3.5 hypothetical protein (RefSeq) compare
Sama_3066 +1.3 6.0 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) compare
Sama_2285 fliR +1.3 7.4 flagellar biosynthesis protein FliR (RefSeq) compare
Sama_1672 +1.2 3.3 hydrogenase assembly chaperone hypC/hupF (RefSeq) compare
Sama_2292 +1.2 7.3 flagellar hook-length control protein FliK (RefSeq) compare
Sama_2287 fliP +1.2 6.6 flagellar biosynthesis protein FliP (RefSeq) compare
Sama_0250 +1.2 6.8 cytochrome c-type biogenesis protein CcmH (RefSeq) compare
Sama_0538 dipZ +1.2 7.0 thiol:disulfide interchange protein precursor (RefSeq) compare
Sama_2074 +1.2 6.0 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) compare
Sama_2047 +1.2 6.9 uridine kinase (RefSeq) compare
Sama_1814 +1.2 3.4 pyruvate kinase (RefSeq) compare
Sama_0099 +1.2 8.9 TetR family transcriptional regulator (RefSeq) compare
Sama_2023 +1.2 2.2 hypothetical protein (RefSeq) compare
Sama_2306 +1.2 3.9 flagellin-like protein (RefSeq) compare
Sama_2314 flgF +1.2 5.3 flagellar basal body rod protein FlgF (RefSeq) compare
Sama_2521 +1.2 7.1 agmatine deiminase (RefSeq) compare
Sama_2297 fliF +1.2 5.1 flagellar MS-ring protein (RefSeq) compare
Sama_2290 fliM +1.1 3.0 flagellar motor switch protein FliM (RefSeq) compare
Sama_0411 +1.1 2.5 hypothetical protein (RefSeq) compare
Sama_0320 +1.1 3.5 tRNA nucleotidyltransferase (RefSeq) compare
Sama_2329 +1.1 4.9 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) compare
Sama_2301 +1.1 4.9 response regulator receiver protein (RefSeq) compare
Sama_2746 +1.1 9.4 sensory box protein, putative (RefSeq) compare
Sama_2410 +1.1 6.6 hypothetical protein (RefSeq) compare
Sama_1371 +1.1 2.9 outer membrane protein W (RefSeq) compare
Sama_1846 +1.1 8.0 methyltransferase, putative (RefSeq) compare
Sama_2612 +1.1 3.4 hypothetical protein (RefSeq) compare
Sama_1170 +1.1 6.5 electron transfer flavoprotein, alpha subunit (RefSeq) compare
Sama_2644 +1.1 8.6 glutamate--ammonia ligase (RefSeq) compare
Sama_2224 +1.1 1.3 UDP-glucose 4-epimerase (RefSeq) compare
Sama_R0116 +1.1 1.3 tRNA-Leu (RefSeq) compare
Sama_0738 +1.1 2.4 thioredoxin 2 (RefSeq) compare
Sama_1348 +1.1 1.7 hypothetical protein (RefSeq) compare
Sama_0771 +1.1 3.1 hypoxanthine phosphoribosyltransferase (RefSeq) compare
Sama_2432 motB +1.0 6.0 flagellar motor protein MotB (RefSeq) compare
Sama_3523 +1.0 8.9 electron-transferring-flavoprotein dehydrogenase (RefSeq) compare
Sama_0397 +1.0 8.4 hypothetical protein (RefSeq) compare
Sama_0540 +1.0 3.4 FxsA cytoplasmic membrane protein (RefSeq) compare
Sama_1360 +1.0 5.6 enoyl-CoA hydratase/isomerase (RefSeq) compare
Sama_1169 +1.0 5.4 electron transfer flavoprotein, beta subunit (RefSeq) compare
Sama_0379 +1.0 7.4 hypothetical protein (RefSeq) compare
Sama_3068 +1.0 7.0 sodium-type flagellar protein MotX (RefSeq) compare
Sama_0642 +1.0 1.6 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq) compare
Sama_2323 +1.0 1.5 flagellar biosynthetic protein FlgN (RefSeq) compare
Sama_1494 +1.0 5.8 phosphate acetyltransferase (RefSeq) compare
Sama_2044 +1.0 1.7 hypothetical protein (RefSeq) compare
Sama_1788 +1.0 1.8 hypothetical protein (RefSeq) compare
Sama_2936 +1.0 8.4 hypothetical protein (RefSeq) compare
Sama_1226 +1.0 6.1 endopeptidase La (RefSeq) compare
Sama_2092 +1.0 6.5 OmpA/MotB (RefSeq) compare
Sama_1292 +1.0 3.1 Rrf2 family protein (RefSeq) compare
Sama_3094 +0.9 1.6 hypothetical protein (RefSeq) compare
Sama_2328 +0.9 5.4 UDP-N-acetylglucosamine 4,6-dehydratase (RefSeq) compare
Sama_2163 +0.9 6.5 M16 family peptidase (RefSeq) compare
Sama_0440 hslU +0.9 1.8 ATP-dependent protease ATP-binding subunit HslU (RefSeq) compare
Sama_0586 +0.9 3.1 LysR family transcriptional regulator (RefSeq) compare
Sama_2051 +0.9 1.4 hypothetical protein (RefSeq) compare
Sama_1193 +0.9 2.0 GlpR family transcriptional regulator (RefSeq) compare
Sama_3023 +0.9 3.5 hflK protein (RefSeq) compare
Sama_1075 +0.8 5.4 phosphate regulon sensor protein PhoR (RefSeq) compare
Sama_2160 +0.8 5.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) compare
Sama_0243 +0.8 2.8 heme exporter protein CcmC (RefSeq) compare
Sama_1881 rnhA +0.8 2.6 ribonuclease H (RefSeq) compare
Sama_0953 rrmJ +0.8 4.2 23S rRNA methyltransferase J (RefSeq) compare
Sama_3200 +0.8 5.3 ribonuclease activity regulator protein RraA (RefSeq) compare
Sama_0245 +0.8 2.3 cytochrome c biogenesis protein CcmA (RefSeq) compare
Sama_2257 +0.8 1.3 DegT/DnrJ/EryC1/StrS family protein (RefSeq) compare
Sama_1949 +0.8 1.8 diguanylate cyclase, putative (RefSeq) compare
Sama_2265 +0.8 2.8 transcriptional activator rfaH, putative (RefSeq) compare
Sama_0828 +0.8 1.6 putative glycerol-3-phosphate acyltransferase PlsY (RefSeq) compare
Sama_1362 +0.8 5.7 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Sama_0376 aceF +0.8 3.8 dihydrolipoamide acetyltransferase (RefSeq) compare
Sama_2522 +0.8 4.4 amidase (RefSeq) compare
Sama_0831 +0.8 2.3 undecaprenyl pyrophosphate phosphatase (RefSeq) compare
Sama_1323 +0.8 2.4 hypothetical protein (RefSeq) compare
Sama_1816 +0.8 2.9 TetR family transcriptional regulator (RefSeq) compare
Sama_3543 +0.8 6.5 glutathione reductase (RefSeq) compare
Sama_0769 +0.8 3.9 UDP-N-acetylmuramate (RefSeq) compare
Sama_1377 +0.8 3.6 butyryl-CoA dehydrogenase (RefSeq) compare
Sama_3225 +0.8 2.6 tRNA-dihydrouridine synthase B (RefSeq) compare
Sama_0166 hslO +0.8 4.7 Hsp33-like chaperonin (RefSeq) compare
Sama_2571 +0.8 4.7 GTP-dependent nucleic acid-binding protein EngD (RefSeq) compare
Sama_2039 yebU +0.8 1.8 rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) compare
Sama_3267 +0.8 3.0 TetR family transcriptional regulator (RefSeq) compare
Sama_1457 +0.7 1.3 nitroreductase family protein (RefSeq) compare
Sama_3323 +0.7 0.9 hypothetical protein (RefSeq) compare
Sama_2427 +0.7 1.5 hypothetical protein (RefSeq) compare
Sama_3622 +0.7 3.9 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Sama_3528 +0.7 1.9 molybdenum cofactor biosynthesis protein E (RefSeq) compare
Sama_1722 ansA +0.7 1.9 cytoplasmic asparaginase I (RefSeq) compare
Sama_1539 +0.7 2.7 putative metal dependent phosphohydrolase (RefSeq) compare
Sama_2368 +0.7 5.0 hypothetical protein (RefSeq) compare
Sama_1361 +0.7 5.8 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Sama_1248 +0.7 3.6 hypothetical protein (RefSeq) compare
Sama_1620 +0.7 1.4 periplasmic nitrate reductase NapE (RefSeq) compare
Sama_2291 fliL +0.7 2.0 flagellar basal body-associated protein FliL (RefSeq) compare
Sama_2433 +0.7 3.9 flagellar motor protein PomA (RefSeq) compare
Sama_2326 +0.7 4.2 hypothetical protein (RefSeq) compare
Sama_1702 +0.7 1.8 LexA regulated protein (RefSeq) compare
Sama_0375 aceE +0.7 4.7 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Sama_1331 +0.7 2.6 hypothetical protein (RefSeq) compare
Sama_2492 +0.7 2.2 hypothetical protein (RefSeq) compare
Sama_2667 +0.7 2.5 hypothetical protein (RefSeq) compare
Sama_0241 +0.7 2.7 cytochrome c-type biogenesis protein CcmE (RefSeq) compare
Sama_2282 flhF +0.7 2.9 flagellar biosynthesis regulator FlhF (RefSeq) compare
Sama_0107 +0.7 5.3 hypothetical protein (RefSeq) compare
Sama_3335 potE +0.7 5.3 putrescine transporter (RefSeq) compare
Sama_3510 ompR +0.7 2.7 osmolarity response regulator (RefSeq) compare
Sama_2049 metG +0.7 1.8 methionyl-tRNA synthetase (RefSeq) compare
Sama_1454 +0.7 3.0 aminoglycoside phosphotransferase (RefSeq) compare
Sama_2870 +0.7 4.1 dihydroorotase (RefSeq) compare
Sama_1346 +0.7 1.3 hypothetical protein (RefSeq) compare
Sama_1126 +0.7 2.2 acetyltransferase (RefSeq) compare
Sama_0460 +0.7 3.8 MSHA pilin protein MshB (RefSeq) compare
Sama_1676 +0.7 2.1 hydrogenase expression/formation protein (RefSeq) compare
Sama_1670 +0.7 1.7 hydrogenase expression/formation protein HypE (RefSeq) compare
Sama_1522 +0.6 1.0 small component of lactate uptake system (from data) compare
Sama_0874 +0.6 1.0 RNA polymerase sigma factor RpoE (RefSeq) compare
Sama_1555 +0.6 1.0 hypothetical protein (RefSeq) compare
Sama_2813 djlA +0.6 2.0 Dna-J like membrane chaperone protein (RefSeq) compare
Sama_1375 +0.6 2.1 Acetyl-CoA C-acetyltransferase (RefSeq) compare
Sama_0448 +0.6 3.7 malate dehydrogenase (RefSeq) compare
Sama_0109 +0.6 5.2 glycosyl transferase, group 1 family protein (RefSeq) compare
Sama_3081 +0.6 2.7 ABC transporter, ATP-binding protein, putative (RefSeq) compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Cytidine in Shewanella amazonensis SB2B

For nitrogen source Cytidine across organisms